>Charlie12_GG#DNA/Charlie GG000088, GG000054, GG000052 Typical Charlie NTCTAGAN target site duplications. 80-85% identical at DNA level to mammalian Charlie12 element over pops 346-2241. Interal deletion products appear to have a few substitutions compared to the autonomous elements. 15% subst  @general @gallus
CAGGCATGTCCAACCCGCGGCCCACGGGCCGCACGTGGCCCAGCNCAGCCCGTCCTGCGGCCGCCCCCTGCCCCGCGCCATCATGGCGGCGGCTCTTCCCCGCCGAGCGGCCCGGCCCGGCCCCGGGCGCGCACCCATCGCTCAGCAACAACCAAACATCGGTGTGCNATTAGCACTGTCTGAGCTGAAACCAGGACACGGGGAGGGCGCAGTGCAGTGCTGACTCCGCCTCTCACGCCCGCCACACACACTCAGTCGNATCGAAACCCGCGTGTATTACACGTTACATGCGCTTGTGCCGCTTGNTGAGTAAAACGCAGTGATTGCCGATANTAATATTTCAACCTACCTAATGNCATCTCAAAAGAAAACAGAACCCAAAAAAAGAAAAATCGTGGATGAAGGAAGAGTGTTCAACGAAAAATGGACAGATGAGTACTTTTTTGTCAAGACAAATAATATGGCACTATGCTTAATTTGCAAGGAAATCGTGTCAGTTTTCAAAGATTACAATTTGAAAAGACATTATATGCAGAAACATGCTGCCAAATTCGATGCATATCAAGGAATGCTTCGTAAAGACAAAATAGCGGAACTGAAAAAAAGTCTGTCATCTCAACAAAATCTTTTTNAAAAAGTTAAAACTCAAACGGACTCTGTTATAAAAGCTAGTTACGTGGTAGCAAATCTGATTGCAAAAAAATCAAAACCATTTACTGATGGTGAGTTTATTAAGCAATGTATGGAAAGCATGGCAGATATAATGTGTCCTGATAAAAAAAAAACGGATTTTTCTAAAATCAGTTTGTCTCACCAGACTGTAGCCAGGCGAACTGAAGAAACAGGAAAATCTATCGAAAGAAATTTGGAGAGTAAAGCTGCTAATTTCAAATTTTATGCTTTGGCGATAGATGAAAGTACTGATGCTACAGATACGGCTCAACTTGCCATTTTCATTAGAGGTATTGATAACGAATATAATGTCACTGAAGAAATGGCTTCTTTGGTGCCATTAAAAGACACAACTAAATCTCTTGATTTGTATGAAGCAGTAAAAANTACATTAAAGCGATTTTCTTTAACCTTTGTCAACATATCTGGTATAGCTACTGATGGCGCCCCGGCGATGGTTGGTAAAAAAGAGGGACTTATAAAATTAATAGAAGATGATGCAATTGCCACCGGCAACTCACGTTTGATGAAATATCACTGCATCGTACATCAAGAAAATTTATGTGCGAAAGCTTTAAAAATGGATAATGTCATGCAAATCGTCATCAAAGCTGTGAATTTCATAAAGTCCAAGGGACTGAATCATCGCCAGTTCCAGGAGTTCCTTAAAAGTATGGATGCTGATTATGGGGACATCATTTACTTTTCTGAAGGAAGGTGGCTAAGTCGGGGTAAAATGCTAAAAAGATTTTATGATTTGCGAAATGAAATCAAGTCNTTTATGGAATCAAAAGGAAAATTTGTGCCAGAACNTGAAGATNAAAAATGGCTCACAGATTTAGCATTTTTGGTGGATTTGACCGCTCATTTAAATGAGTTAAACATGCGTCTTCAAGGTGAAAATCAACTTATCTGTGCTATGTTTCAAACCATAACAGCGTTCGAAATGAAACTTAAATTATGGCAAGCTCAAGTTATGGCAAATAATTTCATGCATTTTGATACGTTGGCTAAACACAGTCCTGTGAACAGCGAAAAATATGCAGCCGTGCTTTCCGTTTTGATAAAGGAATTTGAGAATAGGTTTCAAGATTTCCGAAAAAATCATCNATTTTTTTGTATATTTGCGACTCCATTTTCAGTCGACATAAATACATTACCTGCGAATTTTCAAATGGAATGTATAGAGTTGCAATCAGACATTCAACTCAAAGAAAAATTTGATCATGTCTCTTTACCAGACTTTTATAAGACCTNTCTTACCAGAGAAAAATATCCCTCGCTTCACAATCACGCCTTATTCATGTCATCGCTTTTTGGCAGTACGTACATTTGTGAACAACTGTTTTCAAGGATGAAGCACAGGAAGAGTAANATTTCATCAAAAATCTCTGACGAACACCTTGAGAACTCACTAAGAATTGCAACCACTNCCATCGAACCAGACTGATGCATTAGTTTCACAAAAACAAGGTCAAATATCCCACTAGTTTTATGTTTTTGTTGCTCTCTGTTTTTTATGTTTTAATAAAAAATACATTAAAAATAAGTTTTGTTACTTATATACATTAACTATATTATATATTTTATATGCGGCCCAAGACAATTCCTCTTCACTCAGTGCGGCCCAGGCAAGCCAAAAGGTTGGACACCCATG
>Charlie12_GGa#DNA/Charlie Nonautonomous deletionproduct of Chap1_GG, with a ~1700 bp deletion at pos 233. About 80% identical at DNA level to Charlie12 in human genome. 16% subst level. @general @gallus
CGCCCGGGCATGTCCAGCCTGCGGCCCACAAGCCACATGCAGCCCAGCCCACCACTGCGNGCTGCCCCCTGCTCTGTTATCGCGGCTGTGGNTCTTCCCATCTCAGCGGGCCAGCCCAGCCCCGGGCGCGCACCCATCGCTCAGCAACAACCAAACACCGGTGTGCGATCGGCGCTGTCTGGGCTGAAACCAGGGCATGGGGAGGGCGCAGTGCAGTGCCGACTCAAGTGATGGCAAATAAGTGTATGCATTTTGATACACTGGCTAAACACAGTCCTGTGAACAGCGAAAAAAAACGTGCAGCTGTGCTTTCCGTTTTGATAAAGGAATTTGAGAACAGGTTTNAAGATTGCCGAAAAAATCATCAATTTGTTTATGTTTGCGACTCCATTTTCAGTTGACATAAATACATTACCTGCAAATTTTCAAATGGAATGTATAGAGTTGCAATCAAAAATTTGATCGTGTCTCTTTACCAGACTTTNATAAGNCCTCTCTTACCAGAGAAATATCCCTCACTTCACAACCACGCCTTANTCATGTCATCGCTTTTTGGCAGTACGAACATTTGTGAACAACTGTTTTCAAGGATGAAGCACAGGAAGAGTAAAATTTCATCAAAAATCTCTGACGAACACCTTGAGAACTCACTAAGAATTGCAGCCACTGCCATCGAACCAGACTGATGCATTAGTTTCACANAAACAGGGTCAAATAGCCCCCATGATTTTATGCTTNTGTCGCCCTCTTTTTTAAATGTNTTTAATATTAAAAAAAAGTAAGTTTTGTTACTTATATACATTAACTATATTATATATTTTATATGCGGCCCAAGACAATTCCTCTCCACTCAGTGCGGCCCAGGCAAGCCAAAAGGTTGGACACCCATG
>Mariner1_GG#DNA/Mariner GG000016, GG000051 TA dups ORF from pos 136-1221 encodes protein 43% identical (59% similar) to a mariner transposase found in the lacewing (gi|600833|gb|AAC46945) 17% subst @general @gallus
CGAGGGCTGCTCCGAAAGTAATGCCTCCTATTTTATTATGTTGGCCCACGACGTCAGAGGCGGATGTTGGTGGTATGGCAGTAGAGGCTGAACCTTCCCACCAATATTCCGTTACATTTTGTTGCCGTGCGACAGATGGCAGCAGAGGGGCAGTCTGACAAAATGGCGTCTGACATGGAAGTGCGTATGAAGCAAAGGTGTGKCACTGAATTCCTCCATGCGGAAAAAATGGCACCCACTGACATTCATCGACGCTTGCTGAACGTTTATGGAGACCAAACAGTGGATGTGAGCACAGTGAGGCGGTGGGTGGTGCGTTTCAGCAGTGGCGACAGCGACGTGAAAGACAAGCCACGTTCCGGACGGCCATGCACAGCTGTCACACCACGAAATGAAGAGCGTCTCGATCAGCTCATCCGCGCGAATCGGCGGATTACGACCAGGGAACTGTGTACGGAGCTGAATATCGGCTTCAATGCATTGGAAACGATGGTGGCAACGTTGGAATATCGCAAAGTTTGCGCCAGGTGGGTCCCACGAATGCTCACACAGGAACAGAAAGAACACCGTATGCAAGTTTGTCAGGACCTATTGAACCAATACGAGGCTGAAGGTGACAGTTTCCTGGATCGCATCATTACCGGTGACGAGACGTGGTGTCACCACTACGAGCCGGAGTCAAAACAGCAGTCCATGGAGTGGCGACATGTGAATTCCCCATCGAAGAAAAAGTTCAAGACGCAGCCCTCAGCGGGTAAAGTGATGTGCACTGTCTTTTGGGATAGGAAAGGGGTGATCCTTCTGGATTTCCTGGAACCCGGACAAACCATCAACTCTGACCGCTACATCGCGACGCTGACTAAGCTGAAGGCTCGAACTTCCAGAGTCAGGCCAGAGAAGAAGACAACCTTTCTCTTGCAACACGATAACGCCAGGCCCCATACCAGTTTGAAGACCGTGGAGCACATTGCCAGTCTTGGCTGGACTGTCCTACCACACCCACCGTATAGTCCGGATTTGGCGCCTTCTGACTTCCATCTGTTCGGGCCGATGAAAGATGGACTGCGTGGGCAACATTTTCCTAGCAACGACGCCGTCATAGCAGCTGTGAAACAGTGGGTCACCTCCGCTGGTGCAGATTTTTACGAGCGCGGCATGCAGGCTCTTGTTCATCGCTGGCGAAAATGCATAGCTAATGGTGGTGACTATGTTGAAAAATAGTGTTTTGTAGCTGAGAATTTGCTCTATCAAATAGTGTTATTGTGCTCTTTGTATCTGTTGTAGTTTCCATGGAAATAAATAGGAGGCATTACTTTCGGAGCAACCTACG
>Mariner1b_GG#DNA/Mariner 33 bp TIR, TA dups, 14-15% subst level, surprisingly common (expect ~ 20,000 in genome) Deletion product of Mariner1_GG (misses bp 370-1134) @general @cut @gallus
CGAGGGCTGCTCCGAAAGTAATGCCTCCTATTTTATTATGTTGGCCCACGACGTCAGAGGCGGATGTTGGTGGTATGGCAGTAGAGGTTGAACCTTCCCACCAATATTCCGTTACATTTTGTTGCCGTGTGACAGATGGCAGCAGAGGGGCAGTCTGACAGAATGGCGTCTGACATGGAAGTGCGTATGAAGCAAAGGTGTGTCACTGAATTCCTCCATGCGGAAAAAATGGCACCCACTGACATTCATTGACGCTTGCTGAACGTTTATGGAGACCAAACAGTGGATGTGAGCACAGTGAGGCGGTGGGTGGTGCGTTTCAGCAGTGGCGACAGCGACGTGAAAGACAAGCCACGTTCCGGACGGCCATGCAGATTTTTACGAGCGCGGCATGCAGGCTCTTGTTCATCGCTGGCGAAAATGCATAGCTAATGGTGGTGACTATGTTGAAAAATAGTGTTTTGTAGCTGAGAATTTGCTCTATCAAATAGTGTTATTGTGCTCTTTGTATCTGTTGTAGTTTCCATGGAAATAAATAGGAGGCATTACTTTCGGAGCGACCTACG
>CR1-B#LINE/CR1 @general @gallus
TGCGACAACAGAGCGGTCACAGCTCTCAGCCGGGCAGCTCTCATGAGAGCGGCTGACGCGGCGTGACATTGCCAGTGGCAACGCCTCTGTATCCATGCCCACCTGCCTAGAAAAAGCCTTTGAGAGGGCAGCGATGTGTCACTGCCCATCAGAGACGGAGAGGAAGAGTCGGGGTGTGAGATCCACGTAGGCTGTTTTAACAAGTGTTACTGAGCCTGCTGGTTGCCATGGGTGCACCCCAGTGGAAAGTTGGTGTCACAAAAACTGTGGAGACCCAGGCAGAGGTCCCATGCTCAAGCAGGAGGAAGACAGTAGCCAAGAAGACTGTAGACAGCCAGACTGAGGACCTGTGCATGCACGAGAGGAAGGCTGATGGTAAGATATGTGTGGTGACTCAGATTGAGGTCCCATCACGAGATGCTAGTACACAGGTCACTGGCTGTGTTGACTGCTGGAGCCTGGCCTTTGCAGTGCCAGACGATGGAGGCCGCACTTGCATAAGATGTGACCAACTGAACGACTTACTCAGCCTTGTGATTGACCTGAAGGAGGAGGTAGAGAGGCTGAGGACCATAAAGGACTGTGAGAGGGAGATTGACTGGTGGTGCCAGTCCCTATCAGCCCTGAAATCTTGGCACACAGCTGAAGCTCTGCATGGAGCATGTCAACCCCTGCCGCCTTGCAAACAGGTGGTAGAAGGGAACCGGCCAGCAGACGGTGCTGCAGTGAGCTCCCTGTCCTCTCCTCCCCCTAGCAGCAATTTGAGAGAGGAGGAGGAGTGGAAACAGATACCGGCTCGGCGAGGTGGGCATCCCCCATCCCGACCATCCTCAGCTCCCCAGGTGCCTCTGCACAATAGGTTTGAGGCCCTGGAACTTGAGGGAGGGGTGAGTGAGACTGTGGAGGGAGGTCCACCCGTGAGGTTGCCTCGGGTGAAGCGGTCGACCCCACACCTCACGACTGCCTCCACCCGGAAGGACAGAAGGGTAGTTGTCATAGGTGACTCCCTCCTGCGAGGAATGGAAGGCCCTATATGTCAGCCTGACCCTACCCGTAGGGAGGTGTGCTGCCTCCCTGTGGCACGGGTCAGGGACATTTCAAGGAAACTTCCTGGACTGATTCGCCCTTCTGACTATTACCCCTTATTGATAATTCAGGCTGGCAGAGATGAAATTGCTGAGAAAAGCCTGAGTTCTATCAAGAAAGACTTCAGGGGACTGGGGCAGGTAGTTGATGGAGCTGGCGTGCAGGTGGTTTTCTCTTCTATACCTTCAGTGGCAGGAAAGGGTACTGAGAGGATCCAAAAAACCCACCTCTTAAATAAATGGCTCAGAGGTTGGTGCAAACACAGGAATTTTGGTTTTTTTGACCACGGGGCAATTTACTCAGCACCTGGCATGATGGCTGCAGATGGAAGTAGCCTGTCTCTGAGGGGTAAGAGGATCTTGGCTGAGGAACTGGCAGGACTCATTGAAAGGTCTTTAAACTAGGTATGAAGGGGGAAGGGGACAAAACGAAGGCCACTGGGGTTGAGCGGGTCGTTAGAGGGCTCGTACCAAACTCCATGGGCAAAGATGGTGGAGTACAAAGGAATGGAGTAGGGCAGGGGGATGCTGGGAATGCTACTGTTCTAGGGGATCCTAGATCCCCTATAAAGGCGGTGAGATGGAAAGCCCAGCTGAAGTGCCTTTATACCAATGCACACAGCCTGAGTAATAAACAGGACGAGTTGGAAACTGTGATGCACTTGGAAAGTTATGACCTTGTTGCTATCACAGAAACATGGTGGGATGACTCCCACAACTGGAATACTACCATTGATGGGTATCGGCTCTTTAGAAGGGATAGGCGAGGTAGGAAGGGTGGGGGAGTTGCCCTCTATGTCAAAGAGTGGATAGACTGTGAGGAGCTCCCTCTGAGAAACAGTCAGGAACAGGTCGAGAGCCTGTGGGTTAGAATTAGGGATGGGACTAATAAAGGTCAGCTGGTGATAGGGGTATACTACAGGCCACCTGATCAAGGGGAGGCTGTTGACGAGGCTTTCTTGCTCCAGATGTGGGAGGCATCGTGCTCACAGGCCCTCGTCCTGGTGGGGGACTTCAACCATCCGGACATCTGTTGGAAAGACCACACGGCGAGCTGCAAGAGGTCCAGAAGGCTCGTGGAATGCATTGATGACAACTTTCTGGTCCAGGTAGTGGACAGACCAACCAGAGGTGAAGTGTTGCTGGACCTGCTGCTCACCAATGCGGAAGAGATCATCAAAGGTGTCAACGTTGGAGGCAGCCTGGGCTGCAGCGACCATGCCCTGGTTAAGTTCATGATCTCAAGGGATGTGGGCCTGGCAAATGGTGGGGTCAGGACCCTGAACTTTGGAAGAGAGAACTTTAAGCTGTTCAATGGATCGTTAGCCATGATCCCCTGGAATGCTGTCATTAAAGATAAAGATGTTGAGGAGAGCTGGCTACTCTTCAAGGATGCCCTCCTGAAAGCACAAGAGGTCTCCATCCCTCTGAATAGGAAAGTGGGCAGACGAGATAGGAAACCAGCATGGCTCGGCAAGGACCTGCTGGGCACACTGAGGGTGAAGAAAGGTGCGTACAAGCTCTGGAAACAAGGGCGTGTCACCTGGGAAGAGTACAGGGATGCTGTCCGGACTTGCAGACGTAGGATCAGGAAAGCCAAGGCGCAGGTAGAACTGAACTTAGCGAGGGATGTGAAAAACAATAAGAAGACATTCTACAGGTACATTGGCCAGAAAAGACAGACCAAAACAGGTGTACCTTCTTTAGTAAACTTAAAAGGAGAACTGGCTTCAACGGATGAAGAGAAAGCGGAGGTACTGAATGAGTTCTTTGCCTCAGTCTTCACTGGAGGCCAGGATTCCAGTCTTTCTCACGTCCCTGAGCCCTGCACCCCCAAGCCTCCAGGTGGGGACCAGGGGGGTAAATCCCCCCCCACACTAAGGGCAGAGCAAGTCCGAGACCGCCTCATGAGACTGGATGAGTACAAGTCTTCAGGGCCGGATGGTGTGCATCCCAGGGTTCTGAAGGAGCTGGCTGAGGTGGTTGCTGAGCCACTCTCCATCATATTTGAGAAGTCATGGCTGTCAGGCGAGGTCCCAGATGACTGGAGGAAGGGTTACGTCACTCCCATTTACAAGAAAGGGAGCAAGGAGGACCCAGGGAACTACAGGCCGGTGAGTCTCACCTCTGTGCCTGGGAAGATCATGGAACAGATCCTCCTGGATGACATGCTCGATCACATGAGGAATGAGCGTGTGATCCGAGACAGCCAGCACGGCTTCACCAGGGGAAGGTCATGCTTAACCAATCTTGTGGCCTTCTATGATGGAGTGACGGCGTTGGTGGATGAGGGGAAGGCGACCGATGTCATTTACCTGGACTTGACCAAGGCCTTTGACATGGTCCCCCACCACATCCTTATCTCCAAATTGGAGGGATGTGGATTTGATGGGTGGACCACTCATTGGATAAGAAATTGGTTGAAAGGCCGCAGACAGAGGGTGGTGACCAATGGCTCTATGTCCAGGTGGAGGCCGGTAATGAGCGGAGTCCCCCAGGGGTCTGT
>CR1-B1a_3end#LINE/CR1 7.5% and lower  (B', CR1_GG)  @general @gallus
ATGTCATTTACCTGGACTTGACCAAGGCCTTTGACATGGTCCCCCACCACATCCTTATCTCCAAATTGGAGGGATGTGGATTTGATGGGTGGACCACTCGTTGGATAAGAAATTGGTTGAAAGGCCGCAGACAGAGGGTGGTGATCAATGGTTCTATGTCCAGGTGGAGGCCGGTAACGAGCGGAGTCCCCCAGGGGTCTGTCTTGGGACCGGTGCTCTTTAACATCTTTATCAATGACATCGACGATGGAATCGAGTGCACCCTCAGCAAATTTGCTGACGACACCAAACTGAGTGGTGCGGTTGACACGGAGGAAGGAAGGGATGCCATTCAGAGGGACCTTGACAGACTTGAAAGGTGGGCCCGGGTGAACCTAATGAGGTTCAACACGGCAAAGTGCAGGGTTTTGCACTTGGGCCGGAGGAACCCCAGGCATCTATACAGACTGGAAGGAGCAGTCCTTGAGAGCAGCTCTGCAGAGAAGGACCTGGGGGTCCTGATGGATGACAAACTTAACATGAGCCAGCAGTGTGCTCTTGCAGCTCGGAAAGCAAATGGTATCCTGGGCTCCATCATGAGAGGGGTGGCCAGCAGGGACAGGGAGGTGATTGTCCCTCTCTACTCTGCTCTTGTGAGGCCCCATCTGGAGTACTGTGTCCAGGTATGGAGCCCCCAGTACAAGAAAGACAGAGAGCTGTTGGAGAGGGTCCAGAGGAGGGCCACAAAGATGATCAGGGGGCTGGAGCACCTCCCCTACGAGGACAGGCTGAGGGAGCTGGGCTTATTCAGCCTGGAGAAGAGAAGGCTGCGGGGTGACCTCATTGCAGCCTTTCAGTACCTGAAGGGAGCCTATAAACAGGAAGGGAGTAAACTCTTTGAAAGGGTAGATAACAGCAGGACAAGGGGGAACGGTTTTAAGTTGAAAGAGGGAAGATTTAGGTTGGATGTTAGGGGGAAGTTCTTTACCAGGAGAGTGGTGAGGTGCTGGAACGGGCTGCCCAGAGAGGTTGTGGATGCCCCGTCCCTGGAGGTGTTCAAGGCCAGGTTGGATGGGGCCCTGGGCAACCTGGTCTAGTAAATGGGGAGGTTGGTGGCCCTGCCCGGCAGGGGGGTTGGAGATTCATGATCCTTGAGGTCCCTTCCAACCCAGGCCATTCTGTGATTCTGT
>CR1-B1b_3end#LINE/CR1 12% (B')  @general @gallus
ATGTCATCTACCTGGACTTNCGCAAGGCCTTTGACATGGTCCCNCACCACATCCTTNTCNNTAAGTTGGAGAGATATGGACTTGAAGGGTGGACAGTTCGGTGGATAAAGAACTGGCTGGANGGCTGNGNCCAGAGGGTNGTGGTCAGTGGCTCNANGTCCAGNTGGAGGCCAGTNACGAGTGGTGTCCCCCAGGGGTCGGTGCTGGGGCCAGTGCTGTTTAACATCTTTATCGATGACATGGACAATGGGATCGAGTGCACCCTCAGCAAGTTTGCGGATGACACCAAGCTGAGAGGNGCAGTTGACACANCAGAAGGAAGGGATGCCATCCAGAGGGACCTNGACAGGCTTGAAAAGTGGGCCCAGGTGAACCTAATGAGGTTCAACAAGNCCAAGTGCAAGGTCTTGCACTTGGGTCGGGGCAATCCCAGGTATNTATACAGACTGGGAGAAGAANTCNTTGAGAGCAGCCCTGCNGAGAAGGACCTGGGGGTCCTGGTGGATGANAGGCTTAGCATGAGCCAGCAGTGTGCNCTTGCAGCTCAGAAAGCNAACGGTATCCTGGGCTCCATCATGAGAGGGGTGGCCAGCAGGGACAGGGAGGTGATTGTCCCTCTCTACTCTGCTCTTGTGAGGCCCCATCTGGAGTACTGTGTCCAGGTATGGAGCCCCCAGTACAAGAAAGACAGAGAGCTGTTGGAGAGGGTCCAGAGGAGGGCCACAAAGATGATCAGGGGGCTGGAGCACCTCCCCTACGAGGACAGGCTGAGGGAGCTGGGCTTATTCAGCCTGGAGAAGAGAAGGCTGCGGGGTGACCTCATTGCAGCCTTTCAGTACCTGAAGGGAGCCTATAAACAGGAGGGGAGTCAACTCTTTGAAAGGGTAGATAACGGCAGGACAAGGGGGAACGGTTTTAAGTTGAAGGAGGGAAGATTTAGGTTGGATGTCAGGGGGAAGTTCTTTACCAGGAGAGTGGTGAGGTGCTGGAACAGGCTGCCCAGAGAGGCTGTGGATGCCCCGTCCCTGGAGGTGTTCAAGGCCAGGTTGGATGGGGCCCTGGGCAGCCTGGTCTGGTATTAGATGTGGAGGTTGGCGGCCCTGCCTGCGGCAGGGGGGTTGGAGCTTGATGATCCTTGAGGTCCCTTCCAACCCAAGCCATTCTATGATTCTATGATTCT
>CR1-B2a_3end#LINE/CR1 16% (A')  @general @gallus
ATGTCATCTACCTGGACTTNCGCAAGGCCTTTGACATGGTCCCNCACCACATCCTTNTCNNTAAGTTGGAGAGATATGGACTTGAAGGGTGGACAGTTCGGTGGATAAAGAACTGGCTGGANGGCTGNGNCCAGAGGGTNGTGGTCAGTGGCTCNANGTCCAGNTGGAGGCCAGTNACGAGTGGTGTCCCCCAGGGGTCGGTGCTGGGGCCAGTGCTGTTTAACATCTTTATCGATGACATGGACAATGGGGATCGAGTGCACCCTCAGCAAGTTTGCNGATGACACCAAGCTGAGNGGTGCAGTTGACACANCAGAGGGAAGGGATGCCATCCAGAGGGACCTGGACAGGCTTGAGAAGTGGGCCCATGCGAACCTAATGAGGTTCAACAAGGCCAAGTGCAAGGTGCTGCACCTGGGTTGGGGCAATCCCAGGTACGNATACAGGCTGGGAGAGAACTCNTTGAGAGCAGCCCTGCGGAGAAGGACTTGGGGGTCCTGGTGGACGAAAAGCTGAACATGAGCCAGCAGTGTGCNCTTGCAGCCCGGAAGGCCAACNGTATCCTGGGCTGCATCAAAAGAGGGGTGGCCAGCAGGGCGAGGGAGGTGATTGTCCCCCTCTGCTCTGCCCTCGTGAGGCCCCACCTGGAGTACTGCGTCCAGGCCTGGGGCCCCCAGCACAAGAAGGATGTGGAGCTGTTGGAGCGGGTCCAGAGGAGGGCCACGAGGATGATCAGAGGGCTGGAGCACCTCTCCTATGAAGANAGGCTGAGGGAGCTGGGCTTGTTCAGCCTGGAGAAGAGAAGGCTCCGGGGAGACCTCATTGCGGCCTTCCAGTACTTGAAGGGAGCTTATAAGCAGGAGGGGGACCGACTTTTTACACGGGCAGATAGTGATAGGACAAGGGGGAATGGTTTTAAACTAAAAGAGGGGAGATTTAGGTTAGATGTTAGGAGGAAATTCTTTACTCAGAGGGCGGTGAGGCGCTGGCACAGGCTGCCCAGAGAGGCTGTGGGTGCCCCATCCCTGGAGGCGCTCAAGGCCAGGCTGGATGGGGCCCTGGGCAGCCTGAGCTGGTGGGKGGCAGCCCTGCCCACGGCAGGGGGTTGGAACTGGGTGGTCTTTAAGGTCCCTTCCAACCCAAGCCATTCTGTGATTCTGTGATTCT
>CR1-B2b_3end#LINE/CR1 17% (A')  @general @gallus
ATGTCATCTACCTGGACTTNCGCAAGGCCTTTGACATGGTCCCNCACCACATCCTTNTCNNTAAGTTGGAGAGATATGGACTTGAAGGGTGGACAGTTCGGTGGATAAAGAACTGGCTGGANGGCTGNGNCCAGAGGGTNGTGGTCAGTGGCTCNANGTCCAGNTGGAGGCCAGTNACGAGTGGTGTCCCCCAGGGGTCGGTGCTGGGGCCAGTGCTGTTTAACATCTTTATCGATGACATGGACAATGGGGATCGAGTGCACCCTCAGCAAGTTTGCNGATGACACCAAGCTGAGNGGTGCAGTTGACACANCAGAGGGAAGGGATGCCATCCAGAGGGACCTGGACAGGCTTGAGAAGTGGGCCCATGCGAACCTAATGAGGTTCAACAAGGCCAAGTGCAAGGTGCTGCACCTGGGTTGGGGCAATCCCAGGTACGNATACAGGCTGGGAGAGAACTCNTTGAGAGCAGCCCTGCGGAGAAGGACTTGGGGGTCCTGGTGGACGAAAAGCTGAACATGAGCCAGCAGTGTGCNCTTGCAGCCCGGAAGGCCAACNGTATCCTGGGCTGCATCAAAAGAGGGGTGGCCAGCAGGGCGAGGGAGGTGATTGTCCCCCTCTGCTCTGCCCTCGTGAGGCCCCACCTGGAGTACTGCGTCCAGGCCTGGGGCCCCCAGCACAAGAAGGATGTGGAGCTGTTGGAGCGGGTCCAGAGGAGGGCCACGAGGATGATCAGAGGGCTGGAGCACCTCTCCTATGAAGANAGGCTGAGGGAGCTGGGCTTGTTCAGCCTGGAGAAGAGAAGGCTCCGGGGAGACCTCATTGCGGCCTTCCAGTACTTGAAGGGAGCTTATAAGCAGGAGGGGGACCGACTTTTTACACGGGCAGATAGTGATAGGACAAGGGGGAATGGTTTTAAACTAAAAGAGGGGAGATTTAGGTTAGATGTTAGGAGGAAATTCTTTACTCAGAGGGCGGTGAGGCGCTGGCACAGGCTGCCCAGAGAGGCTGTGGGTGCCCCATCCCTGGAGGTGCCCAAGGCCATGGATGGGGCCCTGGGCAGCCTGAGCTGGTGGGAGGCAGCCCAGCCCGTGGCAGGGGTTGGAGCTGGATGGGCTTTAAGGTCCCTTCCAACCCAAGCCATTCTATGATTCTGTGATTCT
>CR1-B2c_3end#LINE/CR1 18% (A')  @general @gallus
ATGTCATCTACCTGGACTTNCGCAAGGCCTTTGACATGGTCCCNCACCACATCCTTNTCNNTAAGTTGGAGAGATATGGACTTGAAGGGTGGACAGTTCGGTGGATAAAGAACTGGCTGGANGGCTGNGNCCAGAGGGTNGTGGTCAGTGGCTCNANGTCCAGNTGGAGGCCAGTNACGAGTGGTGTCCCCCAGGGGTCGGTGCTGGGGCCAGTGCTGTTTAACATCTTTATCGATGACATGGACAATGGGGATCGAGTGCACCCTCAGCAAGTTTGCNGATGACACCAAGCTGAGNGGTGCAGTTGACACANCAGAGGGAAGGGATGCCATCCAGAGGGACCTGGACAGGCTTGAGAAGTGGGCCCATGCGAACCTAATGAGGTTCAACAAGGCCAAGTGCAAGGTGCTGCACCTGGGTTGGGGCAATCCCAGGTACGNATACAGGCTGGGAGAGAACTCNTTGAGAGCAGCCCTGCGGAGAAGGACTTGGGGGTCCTGGTGGACGAAAAGCTGAACATGAGCCAGCAGTGTGCNCTTGCAGCCCGGAAGGCCAACNGTATCCTGGGCTGCATCAAAAGAGGGGTGGCCAGCAGGGCGAGGGAGGTGATTGTCCCCCTCTGCTCTGCCCTCGTGAGGCCCCACCTGGAGTACTGCGTCCAGGCCTGGGGCCCCCAGCACAAGAAGGATGTGGAGCTGTTGGAGCGGGTCCAGAGGAGGGCCACGAGGATGATCAGAGGGCTGGAGCACCTCTCCTATGAAGANAGGCTGAGGGAGCTGGGCTTGTTCAGCCTGGAGAAGAGAAGGCTCCGGGGAGACCTCATTGCGGCCTTCCAGTACTTGAAGGGAGCTTATAAGCAGGAGGGGGACCGACTTTTTACACGGGCAGATAGTGATAGGACAAGGGGGAATGGTTTTAAACTAAAAGAGGGGAGATTTAGGTTAGATGTTAGGAGGAAATTCTTTACTCAGAGGGCGGTGAGGCGCTGGCACAGGCTGCCCAGAGAGGCTGTGGATGCCCCATCCCTGGAGGTGCTCAAGGCCAGGCTGGATGGGGCCCTGGGCAGCCTGATCTGGTGGCTGGCAACCCTGCCCATGGCAGGGGGGTTGGAACTGGATGGTCTTTGAGGTCCCTTCCAACCCAAGCCATTCTATGATTCTATGATTCT
>CR1-B3a_3end#LINE/CR1 4% (C')   @general @gallus
ATGTCATCTACCTGGACTTNCGCAAGGCCTTTGACATGGTCCCNCACCACATCCTTNTCNNTAAGTTGGAGAGATATGGACTTGAAGGGTGGACAGTTCGGTGGATAAAGAACTGGCTGGANGGCTGNGNCCAGAGGGTNGTGGTCAGTGGCTCNANGTCCAGNTGGAGGCCAGTNACGAGTGGTGTCCCCCAGGGGTCGGTGCTGGGGCCAGTGCTGTTTAACATCTTTATCGATGACATGGACAATGGGGATCGAGTGCACCCTCAGCAAGTTTGCNGATGACACCAAGCTGAGNGGTGCAGTTGACACANCAGAGGGAAGGGATGCCATCCAGAGGGACCTGGACAGGCTTGAGAAGTGGGCCCATGCGAACCTAATGAGGTTCAACAAGGCCAAGTGCAAGGTGCTGCACCTGGGTTGGGGCAATCCCAGGTACGNATACAGGCTGGGAGAGAACTCNTTGAGAGCAGCCCTGCGGAGAAGGACTTGGGGGTCCTGGTGGACGAAAAGCTGAACATGAGCCAGCAGTGTGCNCTTGCAGCCCGGAAGGCCAACNGTATCCTGGGCTGCGTTAAAAAAGGGGTGGCCAGCAGGGAGAGGGAGGTGATTGTGCCCCTCTGCTCAGCCCCTGTGAGGCCCCGTCTGGAGTACTGCGTSCAGGCCTGGGGCCCCCAGTACAGGAAGGACGTGGAGCTCTTAGAGCGGGTCCAGAGGAGGGCCACTAAGATGATCAGAGGGCTGGAGCACCTCTCCTATGAGGAAAGGTTGAGGGAACTGGGCTTGTTTAGCTTGGAGAAGAGAAGGCTCCGGGGAGACCTCATTGTGGCCTTCCAGTACTTGAAGGGAGCGTATAAACAGGAGGGGGAACGGCTGTTTACGAGGGTGGATAGTGATAGGACAAGGGGGAATGGTTTTAAACTGAGACAGGGGAGGTTTAGGTTGGATATTAGGAGGAAGTTTTTCACCCAGAGGGTGGTGACGCACTGGAACAGGCTGCCCAGAGAGGCTGTGGATGCCCCATCCCTGGAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGCTGGTTGGCGACCCTGCACATAGCAGGGGGTTGAAACTGGATGAKCATTGTGGTCCTTTTCAACCCAGGCCATTCTATGATTCTATGATTCT
>CR1-B4a_3end#LINE/CR1 12%    @general @gallus
ATGTCATCTACCTGGACTTNCGCAAGGCCTTTGACATGGTCCCNCACCACATCCTTNTCNNTAAGTTGGAGAGATATGGACTTGAAGGGTGGACAGTTCGGTGGATAAAGAACTGGCTGGANGGCTGNGNCCAGAGGGTNGTGGTCAGTGGCTCNANGTCCAGNTGGAGGCCAGTNACGAGTGGTGTCCCCCAGGGGTCGGTGCTGGGGCCAGTGCTGTTTAACATCTTTATCGATGACATGGACAATGGGGATCGAGTGCACCCTCAGCAAGTTTGCNGATGACACCAAGCTGAGNGGTGCAGTTGACACANCAGAGGGAAGGGATGCCATCCAGAGGGACCTGGACAGGCTTGAGAAGTGGGCCCATGCGAACCTAATGAGGTTCAACAAGGCCAAGTGCAAGGTGCTGCACCTGGGTTGGGGCAATCCCAGGTACGNATACAGGCTGGGAGAGAACTCNTTGAGAGCAGCCCTGCGGAGAAGGACTTGGGGGTCCTGGTGGACGAAAAGCTGAACATGAGCCAGCAGTGTGCNCTTGCAGCCCGGAAGGCCAACNGTATCCTGGGTTGCATCAAGAGAAGCGTGACCAGCAGGGCGAGGGAGGTGATTCTGCCCCTCTACTCTGCTCTCGTGAGACCCCACNTGGAGTACNGANTCCAGGCCTGGGGCCCACAACACGAGAAGGACATGGAGCTGTTGGAGCGGGTCCAGAGGAGGGCCACAAAGATGATCAGAGGGCTGGAGCACCTCTCCTATGAGGACAGGCTGAGAGAGTTGGGGCTCTTCAGCCTGGAGAAGAGAAGGCTCCGGGGGGACCTTATAGCGGCCTTCCAGTACCTGAAGGGGGCCTACAGGAAAGCTGGGGAGGGACTTTTTATAAGGGCANGTAGNGACAGGACAAGGGGAAATGGCTTTAAACTGGAAGAGGGTAGATTTAGACTAGATATNAGGAAGAAATTCTTCACTGTGAGGGTGGTGAGACACTGGAACAGGCTGCCCAGAGAGGCTGTGGATGCCCCCTCCCTGGAAGCATTCAAGGCCAGGCTGGATGGGGCTGTGAGCAACCTGGTCTAGTGGGAGGTGTCCCTGCCTATAGCAGGGGGTTGGAACTGGATGATCTTAAAGGTCCCTTCCAACCCAAACCATTCTATGATTCTATGATTCT
>CR1-B4b_3end#LINE/CR1 19%    @general @gallus
ATGTCATCTACCTGGACTTNCGCAAGGCCTTTGACATGGTCCCNCACCACATCCTTNTCNNTAAGTTGGAGAGATATGGACTTGAAGGGTGGACAGTTCGGTGGATAAAGAACTGGCTGGANGGCTGNGNCCAGAGGGTNGTGGTCAGTGGCTCNANGTCCAGNTGGAGGCCAGTNACGAGTGGTGTCCCCCAGGGGTCGGTGCTGGGGCCAGTGCTGTTTAACATCTTTATCGATGACATGGACAATGGGGATCGAGTGCACCCTCAGCAAGTTTGCNGATGACACCAAGCTGAGNGGTGCAGTTGACACANCAGAGGGAAGGGATGCCATCCAGAGGGACCTGGACAGGCTTGAGAAGTGGGCCCATGCGAACCTAATGAGGTTCAACAAGGCCAAGTGCAAGGTGCTGCACCTGGGTTGGGGCAATCCCAGGTACGNATACAGGCTGGGAGAGAACTCNTTGAGAGCAGCCCTGCGGAGAAGGACTTGGGGGTCCTGGTGGACGAAAAGCTGAACATGAGCCAGCAGTGTGCNCTTGCAGCCCGGAAGGCCAACNGTATCCTGGGTTGCATCAAGAGAAGCGTGACCAGCAGGGCGAGGGAGGTGATTCTGCCCCTCTACTCTGCTCTCGTGAGACCCCACNTGGAGTACNGANTCCAGGCCTGGGGCCCACAACACGAGAAGGACATGGAGCTGTTGGAGCGGGTCCAGAGGAGGGCCACAAAGATGATCAGAGGGCTGGAGCACCTCTCCTATGAGGACAGGCTGAGAGAGTTGGGGCTCTTCAGCCTGGAGAAGAGAAGGCTCCGGGGGGACCTTATAGCGGCCTTCCAGTACCTGAAGGGGGCCTACAGGAAAGCTGGGGAGGGACTTTTTATAAGGGCANGTAGNGACAGGACAAGGGGAAATGGCTTTAAACTGGAAGAGGGTAGATTTAGACTAGATATNAGGAAGAAATTCTTCACTGTGAGGGTGGTGAGACACTGGAACAGGCTGCCCAGAGAGGCTGTGGGTGCCCCATCCCTGGAGGTGTTCAAGGCCAGGCTGGATGGGGCTTTGGGCAACCTGGTCTAGTGGGAGGTGTCCCTGCCCATGGCAGGGGGGTTGGAACTAGATGATCTTTAAGGTCCCTTCCAACCCAAACCATTCTATGATTCTATGATTCT
>CR1-B5a_3end#LINE/CR1 14%  (D')  @general @gallus
ATGTCATCTACCTGGACTTCTGCAAAGCCTTTGACACGGTCCCNCACAACATCCTTNTCTNTAAATTGGAGANATATGGATTTGAAGGGTGGACCGTTCGGTGGGTAAGGAACTGGTTGGATGGCCGCAGCCAGAGGGTTGTGGTCAATGGCTCCGTGTCCAGGTGGAGGCCGGTCACGAGTGGTGTCCCCCAGGGGTCGGTACTGGGGCCGGTNCTCTTCAATATCTTTATCGGTGACCTGGACGATGGGATTGAGTGCACCCTCAGCAAGTTTGCTGATGACACCAAGCTGGGAGGAGCAGTTGACACGCCAGAGGGCTAGGGATGCCATCCAGAGGGACCTGGACAGGCTGAGAGNTGGGCCGAGNNGAACCTCATGAGGTTCAACAAGGGCAANTGCAGGGTCCTGCACCTGGGTNGGGACAACCCCGNGCACCAGTANAAGCTGGGGGNAGAANTGGCTGAGAGNAGCTCTGCGGAGAAGGACCTGGGGGTCCTGGTGGACGGCAAGCTGANCGTGAGCCAGCAGTGTGCCCTNGCGGCCAAGAGGGCCAACCGCACCCTGGGCCGCATCCGGAGCGGCATGGCCAGCAGGGCGAGGGAGGTGATCCTGCCCCTCTGCTCTGCGCTGGTGAGGCCTCACCTGGAGCACTGCGTCCAGATGTGGGNTCCTCAGTACAGGAGAGACGTGGACCTGCTGGAGAGCGTCCAGAGGAGGGCCACAAAAATGATCCAGGGGATGGAGCACCTCTCCTGCGAGGACAGGCTGAGAGAGCTGGGGCTGTTCAGCCTGGAGAAGAGAAGGCTCCGGGGAGACCTGANAGCGGCCTTTCAGTATCTAAAGGGGGGCTGCAGGAAAGAAGGGGACAGACTCTTTAGCAGGGTCTGTNGTGACAGGACAAGGGGAAATGGTTTCAAACTAAAAGAGGGGAGATTTAGACTGGATATAAGGAAGAAGTTTTTTACAGTGAGGGTGGTGAGGCACTGGCACAGGTTGCCCAGAGAGGTGGTGGATGCCCCGTCCCTGGAGACWTTCAAGGCCAGGCTGGACNAGGCTCTGAGCAACCTGATCTAGCTGTAGGTGTCCCTGTTCATTGCAGGGGAGTTGGACTAGATGACCTTTAAGGGTCCCTTCCAACTCAAACGATTCTATGATTCTATGATTCT
>CR1-B5b_3end#LINE/CR1 15% (D')  @general @gallus
ATGTCATCTACCTGGACTTCTGCAAAGCCTTTGACACGGTCCCNCACAACATCCTTNTCTNTAAATTGGAGANATATGGATTTGAAGGGTGGACCGTTCGGTGGGTAAGGAACTGGTTGGATGGCCGCAGCCAGAGGGTTGTGGTCAATGGCTCCGTGTCCAGGTGGAGGCCGGTCACGAGTGGTGTCCCCCAGGGGTCGGTACTGGGGCCGGTNCTCTTCAATATCTTTATCGGTGACCTGGACGATGGGATTGAGTGCACCCTCAGCAAGTTTGCTGATGACACCAAGCTGGGAGGAGCAGTTGACACGCCAGAGGGCTAGGGATGCCATCCAGAGGGACCTGGACAGGCTGAGAGNTGGGCCGAGNNGAACCTCATGAGGTTCAACAAGGGCAANTGCAGGGTCCTGCACCTGGGTNGGGACAACCCCGNGCACCAGTANAAGCTGGGGGNAGAANTGGCTGAGAGNAGCTCTGCGGAGAAGGACCTGGGGGTCCTGGTGGACGGCAAGCTGANCGTGAGCCAGCAGTGTGCCCTNGCGGCCAAGAGGGCCAACCGCACCCTGGGCCGCATCCGGAGCGGCATGGCCAGCAGGGCGAGGGAGGTGATCCTGCCCCTCTGCTCTGCGCTGGTGAGGCCTCACCTGGAGCACTGCGTCCAGATGTGGGNTCCTCAGTACAGGAGAGACGTGGACCTGCTGGAGAGCGTCCAGAGGAGGGCCACAAAAATGATCCAGGGGATGGAGCACCTCTCCTGCGAGGACAGGCTGAGAGAGCTGGGGCTGTTCAGCCTGGAGAAGAGAAGGCTCCGGGGAGACCTGANAGCGGCCTTTCAGTATCTAAAGGGGGGCTGCAGGAAAGAAGGGGACAGACTCTTTAGCAGGGTCTGTNGTGACAGGACAAGGGGAAATGGTTTCAAACTAAAAGAGGGGAGATTTAGACTGGATATAAGGAAGAAGTTTTTTACAGTGAGGGTGGTGAGGCACTGGCACAGGTTGCCCAGAGAGGTGGTGGATGCCCCGTCCCTGGAGACACCCAAGGTCAGGCTGGACGGGGCTCTGAGCACCTGATGGAGCTGTGGGTGTCCCTGTTCACTGCAGGGGAGTTGGACCAGATGGCCTTTAAGGGTCCCTTCCAACTCAAACGATTCTATGATTCTATGATTCT
>CR1-B6a_3end#LINE/CR1 20% (E')  @general @gallus
ATGTCATCTACCTGGACTTCTGCAAAGCCTTTGACACGGTCCCNCACAACATCCTTNTCTNTAAATTGGAGANATATGGATTTGAAGGGTGGACCGTTCGGTGGGTAAGGAACTGGTTGGATGGCCGCAGCCAGAGGGTTGTGGTCAATGGCTCCGTGTCCAGGTGGAGGCCGGTCACGAGTGGTGTCCCCCAGGGGTCGGTACTGGGGCCGGTNCTCTTCAATATCTTTATCGGTGACCTGGACGATGGGATTGAGTGCACCCTCAGCAAGTTTGCTGATGACACCAAGCTGGGAGGAGCAGTTGACACGCCAGAGGGCTAGGGATGCCATCCAGAGGGACCTGGACAGGCTGAGAGNTGGGCCGAGNNGAACCTCATGAGGTTCAACAAGGGCAANTGCAGGGTCCTGCACCTGGGTNGGGACAACCCCGNGCACCAGTANAAGCTGGGGGNAGAANTGGCTGAGAGNAGCTCTGCGGAGAAGGACCTGGGGGTCCTGGTGGACGGCAAGCTGANCGTGAGCCAGCAGTGTGCCCTNGCGGCCAAGAGGGCCAACCGCACCCTGGGGTGCATTGAAAANGGCATGGCCAGCAGGNCAAGGGAGGTGATCCTTCCCCTCTGCTCNGCNCTGGTGAGGCCGCACCTGGAGCGCTGTGTCCAGTTCTGGGCCCCCCAGTNCAAGANAGACATGGACGTACTGGAGAGAGTCCAGCGGAGGGCCACAAAGATGATGAGGGGNCTGGAGCATCTCCCNTGTGAGGAAAGGCTGAGAGAGCTGGGGCTGTTCAGCCTGGAGAAGAGAAGGCTCAGGGGGGATCTCATCGCACCTTACAATACCTGANGGGAGGGNGTAGAGAGGATGGGGCCAGGCTCTTCTCAGTGGTGCGCAGTGACAGGACAAGGGGCAGTGGGCACAAGCTGGAACACGGGAAATTCCGNCTGGACATNAGGAAGAACTTCTTTACTNTGAGGGTGGCGAGGCACTGGAACAGGCTGCCCAGAGAGGTTGTGGGGTCTCCTTCTCTGGAGATATTCAAGACCCGTCTGGACGCTTTCCTGTGCAACCTGCTGCAGGGAACCTGCTTTAGCAGGGGGTTGGACTAGATGATCTCCAGAGGTCCCTTCCAACCCCTACGATTCTGTGATTCTGTGATTCT
>CR1-B6b_3end#LINE/CR1 24% (E')  @general @gallus
ATGTCATCTACCTGGACTTCTGCAAAGCCTTTGACACGGTCCCNCACAACATCCTTNTCTNTAAATTGGAGANATATGGATTTGAAGGGTGGACCGTTCGGTGGGTAAGGAACTGGTTGGATGGCCGCAGCCAGAGGGTTGTGGTCAATGGCTCCGTGTCCAGGTGGAGGCCGGTCACGAGTGGTGTCCCCCAGGGGTCGGTACTGGGGCCGGTNCTCTTCAATATCTTTATCGGTGACCTGGACGATGGGATTGAGTGCACCCTCAGCAAGTTTGCTGATGACACCAAGCTGGGAGGAGCAGTTGACACGCCAGAGGGCTAGGGATGCCATCCAGAGGGACCTGGACAGGCTGAGAGNTGGGCCGAGNNGAACCTCATGAGGTTCAACAAGGGCAANTGCAGGGTCCTGCACCTGGGTNGGGACAACCCCGNGCACCAGTANAAGCTGGGGGNAGAANTGGCTGAGAGNAGCTCTGCGGAGAAGGACCTGGGGGTCCTGGTGGACGGCAAGCTGANCGTGAGCCAGCAGTGTGCCCTNGCGGCCAAGAGGGCCAACCGCACCCTGGGGTGCATTGAAAANGGCATGGCCAGCAGGNCAAGGGAGGTGATCCTTCCCCTCTGCTCNGCNCTGGTGAGGCCGCACCTGGAGCGCTGTGTCCAGTTCTGGGCCCCCCAGTNCAAGANAGACATGGACGTACTGGAGAGAGTCCAGCGGAGGGCCACAAAGATGATGAGGGGNCTGGAGCATCTCCCNTGTGAGGAAAGGCTGAGAGAGCTGGGGCTGTTCAGCCTGGAGAAGAGAAGGCTCAGGGGGGATCTCATCGCACCTTACAATACCTGANGGGAGGGNGTAGAGAGGATGGGGCCAGGCTCTTCTCAGTGGTGCGCAGTGACAGGACAAGGGGCAGTGGGCACAAGCTGGAACACGGGAAATTCCGNCTGGACATNAGGAAGAACTTCTTTACTNTGAGGGTGGCGAGGCACTGGAACAGGTTGCCCAGAGAGGCTGTGGAGTCTCCATCCCTGGAGATNTTCAAAACCCGNCTGGACANGGCCCTGGGCAACCTGCTCTGGGTGGCCCTGCTTTGAGCAGGGGGTTGGACTAGATGACCTCCAGAGGTCCCTTCCAACCTCAACCATTCTATGATTCTGTGATTCT
>CR1-F#LINE/CR1   @general @gallus
ACTTAACGCACTAGGTGAGAAAAGGGTGTTACCTMCACTGTTAACAGGAAGGCAGTCAGTGTGTGAGCACACGCTGCCCAGCCCATACTGCAGCAGCAGGTGTGGGAGGTGGGTCTTTGGCAGGATACGTGAGTGTTTCTTTTGTTCCTTTTGTCTTCGCTTAGGAGACCAGCTCTCCTACGGACAGTCCCCTGTGACCTCCAGTTTGAACATGGTCTCTACCAGGCAGCGGGCTTGCACCAGGAAGACTGTGGCAACCCAGACAGAGGGCCTGCCCAGAAATGTGGCCGTGCAGGTCTCTGGCTGCAGGGGGTGCCAGAGCCTGCTGCTGCCGAGGGAGGATGGGAAGGATGCCACCTGTGTGAGGTGCGAGCAGGTAGATGAGCTGCTCAGCCTGGTGGTAGAGCTCAGGGAGGAGGTGGAGAGATTAAGAACCATCAGAGAGTGCGAGCGGGAGATTGACTGGTGGAGTGACTCTCTGAGAGAAAGATGCAGAGATTCCGCCCCCCAAACCGTAGTGGACCCTCTCCCTTGCTGTAGTCGAGCACAGAGAGCCGATTCGAGAGGAGAGGAGGAATGGCAGCAGGTCCCAGCTCGGAAATGCAGGCGACCCCCACCCCGACCTACCACGGTTCCTCAGGTGTCTCTACATAATAGGTTTGATGCCCTGAAACCGGAGGGAGAGGTGAGTGAGGATAAGGTGGGAAGACTGCCTCCAAGTGTGACTAAGGTGAGGAGGTCAGCTCCACGCTTAAAGACTGCTTCCTCCAAAAAAGAAAGGAGGGTGATAGTTGTAGGTGACTCCCTNCTGAGAGGAACAGAGGGCCCGATATGTCGGCCTGACCCTACCCGCAGGGAGGTGTGCTGCCTCCCTGGGGCCCGGGTCAGGGATATTTCCAGGAAACTTCCTGGTCTGATCCACCCCTCTGATTACTATCCGTTATTGATAGTTCAGGCTGGCAGCGATGAGGTTGCTGACAGAAGCCTGAGGGCTATAAAAAATGATTTTAGGGGGCTGGGGAGGTTAGTTGACAATGCAGGCATACAAGTAGTATTTGCAGGTATTCCTACAGTGGCAGGGAAAGATAATGCAGTGACCAGGAAAACCCATCGCATAAACACATGGCTGAGAGGCTGGTGCAAACGCAAGAATCTCGGGTTCTTTGATCATGGGGCGGTCTACTCGGCACCTGGCCTGAGGTCTGCAGATGGGTATCACCTGTCTCAAAGGGGGAAACGGATCCTTGCCCAGGAGCTGGCAGGACTTGTAGAGAGGTCTTTAAACTAGACATGAGGGGGGAAGGGGATAAAACCAGGCCTGCTAGAGATGAGCCTGGGGGAGCGATAATAGGATTAGGGGTGAGGNGAGAGGCCCAGCCAAAGTGTGTCTATACCAATGCACGCAGCATGGGCAACAANCAAGAAGAGTTAGAAGCCATTGTGCAGCAGGCAAGCTATGACCTAGTTGCCATTACAGAAACGTGGTGGGACCACTCCCATGACTGGAGTGCTGCAATGGATGGCTACAAACTCTTCAGGAAGGATAGGCAAGGAAGGAGGGGTGGTGGCGTGGCTCTCTATGTTAAAGAGTGCTTTGAGGTTACTGAACTTATGACTGGGGANAATAAGGTTGAATCCTTATGGGTTAAGATCAGGGGAAGAGCTGACAAGGCAGACATCCTGGTGGGCGTCTGTTATAGACCGCCAAACCAGGATGAAGAGACAGATGAGTTGTTCTATGAGCAGCTGGCGGAAGCTGCGCGATCGCCGGCCTTTGTCCTCATGGGGGACTTCAACTTCCCCGACATATGCTGGGAATACAATTTAGCACAGAAGAAGCAGTCTAGGAGGTTTCTGGGAAATGTATGGAAGGGCACAACTTTCTTGATGCAGATGATAAGAGAACCTACAAGAGGAGCTGCCCCGTTAGACCTGCTGTTCACAAACAGAGAAGGTCTGGTGGGAGATGTAAAAGGTTGGGGGCTGTCTTGGSCAGAGTGACCNCGACATGGTAGAGTTCCTCGATTCTTGGTGGAGTCAGGAAGGGGANCAGCAAAACTGCTACCTTGGACTTCCGGAGGGCAGACTTTGAATTGTTCAGGAGACTAGTAGGGGGAGTCCCCTGGGGCTCAGTCTTAGCGAGTAAAGGGGTACAAGATGGCTGGTTGCTCTTTAAGAAGGAAGTCTTAAAGGCGCAGGAGCAGGCTGTNCCCCCGAGCCGCAAAATGAGCCGGCGCGGAAGAAGACCGGCGTGGATGAATAGGGAACTNTTCTTGAGGNTCCAGGAGAAAAAGAGAATCTACCTCCTGTGGAAGAAGGGACGGGCAACCCAGAAAGAATACAAAGAAGTTGTTAAGATGTGCAGGGAGAAAATCAGAAAGGCAAAAGCCCAGCTTGAACTCAACCTGGCTGCTGGGGTAAAAGGGAACAAGAAACTCTTTTACAAGTATATCAACAGTAAGAGGAGGACCAGGGAGAATCTCCATCCTCTACTGGATGAGGCTGGGAATGTGACCACTGAGGATAAGGAAAAGGCAGACGTTCTGAATGCCTTCTTTACATCTGTCTTTAAAAGNCAGACCAGTTATCCTCAGGTTTCTCCACTCTCTGACCTGGCAGCCTTGGCTGGGGAGCAGACTAAACCCCCCACAATTCAGGAGGAAACAGTCAGAGACCTGCTACTCCAACTGGNCTGCCACAAGTCCATGGGACCGGATGAGATTCACCCGAGAGTGCTGAGGGAACTGGCGGAGGNGATAGCCGAGCCGCTTTCCATCATCTGTCAGTGCTCCTTGTTGACGGGTGAGGTCCCAGAAGACTGGAGGCTTGCCAATGTGACTCCCATCTACAAGAAGGGCTGCAGGGAGGATCCGGGGAACTACAGGCCTGTTAGCCTGACCTCGGTGCTGGGGAAGATTATGGAGCAGATTGTCTTGAGGGAGATCACGTGGCATGTGGGGGACAACCGGGGGATCAGGCCTTGCCAGCATGGGTTCACGAAGGGCAGGTCCTGCTTGACCAACCTGATCTCCTTCTATGATCTAGTGACCTGTCTGGTGGATGAGGGAAAGGCTGTTGATGTGGTCTACCTAGACTTCAGCAAAGCCTTTGACACTGTGTCCCACAGTATTCTCCTGCAGAAGCTGGCAGTCCGTGGCTTGGACAGATACACTCTTGGCTGGGTAAGGAACTGGCTGGAGGGCCGGGCCCAGAGAGTGGTGGTGAATGGAGTTAAATCCAGCTGGCGACCGGTCACGAGTGGTGTTCCCCAGGGGTCNG
>CR1-F1a_3end#LINE/CR1 5% (F')  @general @gallus
ATGTGGTCTACCTAGACTTCAGCAAAGCCTTTGACACTGTGTCCCACAGTATTCTCCTGCAGAAGCTGGCAGTCCGTGGCTTGGACAGATACACTCTTGGCTGGGTAAGGAACTGGCTGGAGGGCCGGGCCCAGAGAGTGGTGGTGAATGGAGTTAAATCCAGCTGGCGACCGGTCACGAGTGGTGTTCCCCAGGGGTCNGTGCTGGGGCCTGTCCTGTTTAATATCTTTATTGATGACCTGGATGAGGGCATTGAGTGCNCCCTCAGTAAGTTTGCAGATGACACCAAGCTGGCTGGAAGTGTTGATCTGCCTGAGGGTAGCGAGGCCCTACAGAGGGATCTGGATAGGTTGGATAGCTGGGCTGAAGCCAATGGGATGGGATTCAACAAGACCAAATGCCGGGTCCTGCACTTTGGCCGCAATAACCCCAGGCAACGCTACAGGCNTGGGGCAGAGTGGCTGGAAGACTGTGTAGAGGAAATGGACCCGGGGGTGTTGATTGACGCTAGACTGAACATGAGCCAGCAGTGTGCCCAGGTGGCCAAGAAGGCCAATGGCATCCTGGCTTGTATCAGAAATAGTGTGGCCAGCAGGAGCAGGGAAGTAATTGTCCCCCTGTACTCAGCACTGGTGAGGCCGCACCTCGAGTACTGTGTCCAGTTTTGGGCCCCTCACTGCAAGAAAGACATCGAGGCCCTGGAGCGTGTCCAGAGGAGGGCAACGAAGCTGGTGAGGGGTCTGGAGCACAGGCCTTATGAGGAGCGGCTGAAGGAGCTGGGATTGTTCAGTCTGGAGAAGAGGAGGCTCAGGGGAGACCTTATTGCTCTCTATAACTACCTGAAGGGAGGTTGTAGTGAGCTGGGGGTCGGCCTCTTCTCTCGTGTGACTAGTGATAGGACGAGAGGGAATGGCCTCAAGCTGCGCCAGGGAAGGTTCAGGCTGGACGTTAGGAAATACTACTTCTCTGAAAGGGTGGTCAGGCACTGGAATAGGCTGCCCAGGGAGGTGGTGGAGTCACCGACCCTGGTGGTGTTCAAAGAGCGTTTGGATGTTGTGTTGAGGGACATGGTTTAGCGAGAACCATTGGTGAAGGGCGAATGGTTGGACTGGATGATCCTGTGGGTCTTTTCCAACCTTAGCGATTCTATGATTCTATGATTCT
>CR1-F1b_3end#LINE/CR1 8.5% (F')  @general @gallus
ATGTGGTCTACCTAGACTTCAGCAAAGCCTTTGACACTGTGTCCCACAGTATTCTCCTGCAGAAGCTGGCAGTCCGTGGCTTGGACAGATACACTCTTGGCTGGGTAAGGAACTGGCTGGAGGGCCGGGCCCAGAGAGTGGTGGTGAATGGAGTTAAATCCAGCTGGCGACCGGTCACGAGTGGTGTTCCCCAGGGGTCNGTGCTGGGGCCTGTCCTGTTTAATATCTTTATTGATGACCTGGATGAGGGCATTGAGTGCNCCCTCAGTAAGTTTGCAGATGACACCAAGCTGGCTGGAAGTGTTGATCTGCCTGAGGGTAGCGAGGCCCTACAGAGGGATCTGGATAGGTTGGATAGCTGGGCTGAAGCCAATGGGATGGGATTCAACAAGACCAAATGCCGGGTCCTGCACTTTGGCCGCAATAACCCCAGGCAACGCTACAGGCNTGGGGCAGAGTGGCTGGAAGACTGTGTAGAGGAAATGGACCCGGGGGTGTTGATTGACGCTAGACTGAACATGAGCCAGCAGTGTGCCCAGGTGGCCAAGAAGGCCAATGGCATCCTGGCTTGTATCAGAAATAGTGTGGCCAGCAGGAGCAGGGAAGTAATTGTCCCCCTGTACTCAGCACTGGTGAGGCCGCACCTCGAGTACTGTGTCCAGTTTTGGGCCCCTCACTGCAAGAAAGACATCGAGGCCCTGGAGCGTGTCCAGAGGAGGGCAACGAAGCTGGTGAGGGGTCTGGAGCACAGGCCTTATGAGGAGCGGCTGAAGGAGCTGGGATTGTTCAGTCTGGAGAAGAGGAGGCTCAGGGGAGACCTTATTGCTCTCTATAACTACCTGAAGGGAGGTTGTAGTGAGCTGGGGGTCGGCCTCTTCTCTCGTGTGACTAGTGATAGGACGAGAGGGAATGGCCTCAAGCTGCGCCAGGGAAGGTTCAGGCTGGACGTTAGGAAATACTACTTCTCTGAAAGGGTGGTCAGGCACTGGAATAGGCTGCCCAGGGAGGTGGTGGAGTCACCGACCCTGGAGGTGTTCAAGGAACATTTGGACGTTGTGTTGAGGGACATGGTTTAGTGAGAACTATTGGTGATGGGTGGATGGTTGGACTGGGTGATCCTGTGGGTCTTTTCCAACCTTGGTGATTCTATGATTCTATGATTCT
>CR1-F1c_3end#LINE/CR1 16% (F')  @general @gallus
ATGTCATCTACCTGGACTTCTGCAAAGCCTTTGACACGGTCCCNCACAACATCCTTNTCTNTAAATTGGAGANATATGGATTTGAAGGGTGGACCGTTCGGTGGGTAAGGAACTGGTTGGATGGCCGCAGCCAGAGGGTTGTGGTCAATGGCTCCGTGTCCAGGTGGAGGCCGGTCACGAGTGGTGTCCCCCAGGGGTCGGTGCTGGGGCCNGCCCTGTTTAATGTCTTTATTGATGACCTGGATGAGGGAATTGAGCGCACCCTCAGTAAGTTTGCAGATGACACCAAGCTGGGAGGAGGTGTTGATCTGCCTGAGGGTAGGGAGGCCCCACAGAGGGATCTGGACAGGCTGGATCGCTGGGCTGAGGCCAATGGGATGAGNTTCAACAAGACCAAGTGCCGGGTCCTGCACTTTGGCCACAACAACCCCATGCAGCGCTACAGGCTTGGGGCAGAGTGGCTGGAAGGCTGCGTGGAGGAAAAGGACCTGGGGGTGTTGGCTGACGCCCGGCTGAACATGAGCCAGCAGTGTGCCCAGGTGGCCAAGAAGGCCAACGGCATCCTGGCTTGTATCAGAAATAGTGTKGCCAGCAGGAGCAGGGAAGTAATTGTCCCCCTGTACTCAGCACTGGTGAGGCCGCACCTCGAGTACTGTGTCCAGTTTTGGGCCCCTCACTGCAAGAAAGACATCGAGGCCCTGGAGCGTGTCCAGAGGAGGGCAACGAAGCTGGTGAGGGGTCTGGAGCACAGGCCTTATGAGGAGCGGCTGAAGGAGCTGGGATTGTTCAGTCTGGAGAAGAGGAGGCTCAGGGGAGACCTTATTGCTCTCTATAACTACCTGAAGGGAGGTTGTAGTGAGCTGGGGGTCGGCCTCTTCTCTCGTGTGACTAGTGATAGGACGAGAGGGAATGGCCTCAAGCTGCGCCAGGGAAGGTTCAGGCTGGACGTTAGGAAATACTACTTCTCTGAAAGGGTGGTCAGGCACTGGAATAGGCTGCCCAGGGAGGTGGTGGAGTCACCATCCCTGGAGGTGTTCAAGAAACGTTTGGATGTGGTACTGAGGGACATGGTTTAGTGGGGGGATATTGGTGGTAGGTGGATGGTTGGACTGGATGATCTTGGAGGTCTTTTCCAACCTTGGTGATTCTATGATTCTATGATTCT
>CR1-F2a_3end#LINE/CR1 13% (F')  @general @gallus
ATGTCATCTACCTGGACTTCTGCAAAGCCTTTGACACGGTCCCNCACAACATCCTTNTCTNTAAATTGGAGANATATGGATTTGAAGGGTGGACCGTTCGGTGGGTAAGGAACTGGTTGGATGGCCGCAGCCAGAGGGTTGTGGTCAATGGCTCCGTGTCCAGGTGGAGGCCGGTCACGAGTGGTGTCCCCCAGGGGTCGGTGCTGGGGCCNGCCCTGTTTAATGTCTTTATTGATGACCTGGATGAGGGAATTGAGCGCACCCTCAGTAAGTTTGCAGATGACACCAAGCTGGGAGGAGGTGTTGATCTGCCTGAGGGTAGGGAGGCCCCACAGAGGGATCTGGACAGGCTGGATCGCTGGGCTGAGGCCAATGGGATGAGNTTCAACAAGACCAAGTGCCGGGTCCTGCACTTTGGCCACAACAACCCCATGCAGCGCTACAGGCTTGGGGCAGAGTGGCTGGAAGGCTGCGTGGAGGAAAAGGACCTGGGGGTGTTGGCTGACGCCCGCTGAACATGAGCCAGCAGTGTGCCCAGGTGGCCAAGAAGGCCAACGGCATCCTGGCTTGTGTCAGAAATAGTGCAGCCAGCAGGANCAGGGAGGTGACCGTCCCTCTGTACTCGGCNCTGGTGAGGCCGCACCTCGAGTGCTGCGTTCAGTGTTGGGCCCCTCACTGCAAGAAAGACATGGAGGCCCTGGAGTGTGTCCAGAGAAGGGCAACGGAGCTGTGAGGGGTCTGGAGCACAAGTCTTATGGGGAGCGGCTGAGGGAGCTGGGATTGTTCAGTCTGGAGAAGAGGAGGCTCAGGGGAGACCTCATCGCTCTCTACAACTACCTGAAAGGAGGTTGTGGCGAGGTGGGGGTCGGCCTCTTCTCCCGGGTAACAGCGATAGGACGAGAGGKAATGGCCTCAAGTTGCGCCAGGGGAGGTTCAGGTTGGATATTAGGAAAAATTTCTTCTCAGAAAGAGTGGTGAKGCANTGGCACAGGCTGCCCAGGGAGGTGGTGGGGTCACCGTCCCTGGAGGTGTTCCAGAACCGTGGAGATGTGGCACTGAGGGACGTGGTCAGTGGGCATGGTGGGGGTGGGTTGGGGTTGGACTTGGTGATCTTAGAGGTCTTTTCCAACCTTAATGATTCTGTGATTCTATGATTCT
>CR1-F2b_3end#LINE/CR1 16% (F')  @general @gallus
ATGTCATCTACCTGGACTTCTGCAAAGCCTTTGACACGGTCCCNCACAACATCCTTNTCTNTAAATTGGAGANATATGGATTTGAAGGGTGGACCGTTCGGTGGGTAAGGAACTGGTTGGATGGCCGCAGCCAGAGGGTTGTGGTCAATGGCTCCGTGTCCAGGTGGAGGCCGGTCACGAGTGGTGTCCCCCAGGGGTCGGTGCTGGGGCCNGCCCTGTTTAATGTCTTTATTGATGACCTGGATGAGGGAATTGAGCGCACCCTCAGTAAGTTTGCAGATGACACCAAGCTGGGAGGAGGTGTTGATCTGCCTGAGGGTAGGGAGGCCCCACAGAGGGATCTGGACAGGCTGGATCGCTGGGCTGAGGCCAATGGGATGAGNTTCAACAAGACCAAGTGCCGGGTCCTGCACTTTGGCCACAACAACCCCATGCAGCGCTACAGGCTTGGGGCAGAGTGGCTGGAAGGCTGCGTGGAGGAAAAGGACCTGGGGGTGTTGGCTGACGCCCGCTGAACATGAGCCAGCAGTGTGCCCAGGTGGCCAAGAAGGCCAACGGCATCCTGGCTTGTGTCAGAAATAGTGCAGCCAGCAGGANCAGGGAGGTGACCGTCCCTCTGTACTCGGCNCTGGTGAGGCCGCACCTCGAGTGCTGCGTTCAGTGTTGGGCCCCTCACTGCAAGAAAGACATGGAGGCCCTGGAGTGTGTCCAGAGAAGGGCAACGGAGCTGTGAGGGGTCTGGAGCACAAGTCTTATGGGGAGCGGCTGAGGGAGCTGGGATTGTTCAGTCTGGAGAAGAGGAGGCTCAGGGGAGACCTCATCGCTCTCTACAACTACCTGAAAGGAGGTTGTGGCGAGGTGGGGGTCGGCCTCTTCTCCCGGGTAACAGCGATAGGACGAGAGGKAATGGCCTCAAGTTGCGCCAGGGGAGGTTCAGGTTGGATATTAGGAAAAATTTCTTCTCAGAAAGAGTGGTGAKGCANTGGCACAGGCTGCCCAGGGAGGTGGTGGAGTCACCGTCCCTGGAGGTGTTCAAGAACCGTGGAGATGTGGCACTGAGGGACGTGGTCAGTGGGCATGGTGGGGATGGGTTGACGGTTGGACTNGGTGATCTTAGAGGTCTTTTCCAACCTTAATGATTCTATGATTCTATGATTCT
>CR1-F2c_3end#LINE/CR1 15.5% (F')  @general @gallus
ATGTCATCTACCTGGACTTCTGCAAAGCCTTTGACACGGTCCCNCACAACATCCTTNTCTNTAAATTGGAGANATATGGATTTGAAGGGTGGACCGTTCGGTGGGTAAGGAACTGGTTGGATGGCCGCAGCCAGAGGGTTGTGGTCAATGGCTCCGTGTCCAGGTGGAGGCCGGTCACGAGTGGTGTCCCCCAGGGGTCGGTGCTGGGGCCNGCCCTGTTTAATGTCTTTATTGATGACCTGGATGAGGGAATTGAGCGCACCCTCAGTAAGTTTGCAGATGACACCAAGCTGGGAGGAGGTGTTGATCTGCCTGAGGGTAGGGAGGCCCCACAGAGGGATCTGGACAGGCTGGATCGCTGGGCTGAGGCCAATGGGATGAGNTTCAACAAGACCAAGTGCCGGGTCCTGCACTTTGGCCACAACAACCCCATGCAGCGCTACAGGCTTGGGGCAGAGTGGCTGGAAGGCTGCGTGGAGGAAAAGGACCTGGGGGTGTTGGCTGACGCCCGCTGAACATGAGCCAGCAGTGTGCCCAGGTGGCCAAGAAGGCCAACGGCATCCTGGCTTGTGTCAGAAATAGTGCAGCCAGCAGGANCAGGGAGGTGACCGTCCCTCTGTACTCGGCNCTGGTGAGGCCGCACCTCGAGTGCTGCGTTCAGTGTTGGGCCCCTCACTGCAAGAAAGACATGGAGGCCCTGGAGTGTGTCCAGAGAAGGGCAACGGAGCTGTGAGGGGTCTGGAGCACAAGTCTTATGGGGAGCGGCTGAGGGAGCTGGGATTGTTCAGTCTGGAGAAGAGGAGGCTCAGGGGAGACCTCATCGCTCTCTACAACTACCTGAAAGGAGGTTGTGGCGAGGTGGGGGTCGGCCTCTTCTCCCGGGTAACAGCGATAGGACGAGAGGKAATGGCCTCAAGTTGCGCCAGGGGAGGTTCAGGTTGGATATTAGGAAAAATTTCTTCTCAGAAAGAGTGGTGAKGCANTGGCACAGGCTGCCCAGGGAGGTGGTGGAGTCACCGTCCCTGGAGGTGTTCAGGAACCGTGGAGATGTGGCACTGAGGGACGCGGTCAGTGGGCAATATTGGTGGTAGGTGGACGGTTGGACTAGATGATCTTAGAGGTCTTTTCCAACCTTAATGATTCTATGATTCTATGATTCT
>CR1-F2d_3end#LINE/CR1 15% (F')  @general @gallus
ATGTCATCTACCTGGACTTCTGCAAAGCCTTTGACACGGTCCCNCACAACATCCTTNTCTNTAAATTGGAGANATATGGATTTGAAGGGTGGACCGTTCGGTGGGTAAGGAACTGGTTGGATGGCCGCAGCCAGAGGGTTGTGGTCAATGGCTCCGTGTCCAGGTGGAGGCCGGTCACGAGTGGTGTCCCCCAGGGGTCGGTGCTGGGGCCNGCCCTGTTTAATGTCTTTATTGATGACCTGGATGAGGGAATTGAGCGCACCCTCAGTAAGTTTGCAGATGACACCAAGCTGGGAGGAGGTGTTGATCTGCCTGAGGGTAGGGAGGCCCCACAGAGGGATCTGGACAGGCTGGATCGCTGGGCTGAGGCCAATGGGATGAGNTTCAACAAGACCAAGTGCCGGGTCCTGCACTTTGGCCACAACAACCCCATGCAGCGCTACAGGCTTGGGGCAGAGTGGCTGGAAGGCTGCGTGGAGGAAAAGGACCTGGGGGTGTTGGCTGACGCCCGCTGAACATGAGCCAGCAGTGTGCCCAGGTGGCCAAGAAGGCCAACGGCATCCTGGCTTGTGTCAGAAATAGTGCAGCCAGCAGGANCAGGGAGGTGACCGTCCCTCTGTACTCGGCNCTGGTGAGGCCGCACCTCGAGTGCTGCGTTCAGTGTTGGGCCCCTCACTGCAAGAAAGACATGGAGGCCCTGGAGTGTGTCCAGAGAAGGGCAACGGAGCTGTGAGGGGTCTGGAGCACAAGTCTTATGGGGAGCGGCTGAGGGAGCTGGGATTGTTCAGTCTGGAGAAGAGGAGGCTCAGGGGAGACCTCATCGCTCTCTACAACTACCTGAAAGGAGGTTGTGGCGAGGTGGGGGTCGGCCTCTTCTCCCGGGTAACAGCGATAGGACGAGAGGKAATGGCCTCAAGTTGCGCCAGGGGAGGTTCAGGTTGGATATTAGGAAAAATTTCTTCTCAGAAAGAGTGGTGAKGCANTGGCACAGGCTGCCCAGGGAGGTGGTGGAGTCGCCGTCCCTGGAGGTGTTCAAGAAAAGGGTAGATGTGGCACTGAGGGACGTGGTCAGTGGGCATGGTGGTGATGGGTTGACGGTTGGACTAGATGATCTTAGTGGTCTTTTCCAACCTTAATGATTCTATGATTCTGTGATTCT
>CR1-F3_3end#LINE/CR1 12.5%   @general @gallus
ATGTCATCTACCTGGACTTCTGCAAAGCCTTTGACACGGTCCCNCACAACATCCTTNTCTNTAAATTGGAGANATATGGATTTGAAGGGTGGACCGTTCGGTGGGTAAGGAACTGGTTGGATGGCCGCAGCCAGAGGGTTGTGGTCAATGGCTCCGTGTCCAGGTGGAGGCCGGTCACGAGTGGTGTCCCCCAGGGGTCGGTGCTGGGGCCNGCCCTGTTTAATGTCTTTATTGATGACCTGGATGAGGGAATTGAGCGCACCCTCAGTAAGTTTGCAGATGACACCAAGCTGGGAGGAGGTGTTGATCTGCCTGAGGGTAGGGAGGCCCCACAGAGGGATCTGGACAGGCTGGATCGCTGGGCTGAGGCCAATGGGATGAGNTTCAACAAGACCAAGTGCCGGGTCCTGCACTTTGGCCACAACAACCCCATGCAGCGCTACAGGCTTGGGGCAGAGTGGCTGGAAGGCTGCGTGGAGGAAAAGGACCTGGGGGTGTTGGCTGACGCCCGGCTGAACATGAGCCAGCAGTGTGCCCAGGTGGCCAAGAAGGCCAACGGCATCCTGGCTTGTATCAGAAATAGTGTKGCCAGCAGGAGCAGGGAAGTAATTGTCCCCCTGTACTCAGCACTGGTGAGGCCGCACCTCGAGTACTGTGTCCAGTTTTGGGCCCCTCACTGCAAGAAAGACATCGAGGCCCTGGAGCGTGTCCAGAGGAGGGCAACGAAGCTGGTGAGGGGTCTGGAGCACAGGCCTTATGAGGAGCGGCTGAAGGAGCTGGGATTGTTCAGTCTGGAGAAGAGGAGGCTCAGAGGAGACCTCAATGCACTCTNCAACTNCCTGAAGGGAGGCTGTGATGAGGAGGGGTTTGGCCTCTTCTCCCAGGCAACAAACAGGACCNGAGGAAATGGCCACAAGTTGTACCAGAGGAGGTTTAGGTTGGACATNAGGAAAAACTTTTTCTCTCAGAGAGTGGTCAGGCACTGGAAAGGCTGCCCAGGGAGGTGGTGGAGTCGCCGTCCCTGGCAGTGTTCAAGAGGCGTCCGGATGAGGAGCTACGAGATATGGTTTAGTGGCTTGTGGTAGCAATGGTAATGGGAGGACGGTTGGACTAGATGATCTTGTAGGTCCTTTCCAACCTTGTGATTCTATGATTCTATGATTCT
>CR1-X1a_3end#LINE/CR1 20%   @general @gallus
ATGTCATCTACCTGGACTTCTGCAAAGCCTTTGACACGGTCCCNCACAACATCCTTNTCTNTAAATTGGAGANATATGGATTTGAAGGGTGGACCGTTCGGTGGGTAAGGAACTGGTTGGATGGCCGCAGCCAGAGGGTTGTGGTCAATGGCTCCGTGTCCAGGTGGAGGCCGGTCACGAGTGGTGTCCCCCAGGGGTCGGTACTGGGGCCGGTNCTCTTCAATATCTTTATCGGTGACCTGGACGATGGGATTGAGTGCACCCTCAGCAAGTTTGCTGATGACACCAAGCTGGGAGGAGCAGTTGACACGCCAGAGGGCTAGGGATGCCATCCAGAGGGACCTGGACAGGCTGAGAGNTGGGCCGAGNNGAACCTCATGAGGTTCAACAAGGGCAANTGCAGGGTCCTGCACCTGGGTNGGGACAACCCCGNGCACCAGTANAAGCTGGGGGNAGAANTGGCTGAGAGNAGCTCCGCGGAGAGGGATCTGGGGGTTCTGGTTGACGGCAAGCTGAACGTGAGCCAGCAGTGTGCCCTGGCAGCCMAGAGGGCCAACCGCACCCTGKGGTGCACCAGGCCCAGCACNGCCACCGGGCGAGGGGAGGGGTTGTCCTGCTCTGCTCTGTGCTGTGCGGCCTCACCTCCNGCACTGGGTGCAGTTTTGGGTGCCACAATATGAGAAGGACATAAAGCTATTAGAGAGTGTCCAAAGGAGGGCTACGAAGATGGTGAAGGGTCTGGAGGGCAAGACGTACGAGGAGCGGCTGAGGTCCCTGGGTTTGCTCAGCCCAGAGCAGAGGAGCTGAGGGGAGGCCTCATGGCGGCTGCAGCTCCTCACAGGGAGCGGAGGGGCAGCGCTGAGCTCTGCTCTGTGTGACAGCGACAGGGCCCGAGGGAACGGCATGGAGCTGCGTCAGGGGAGGGGCAGCTGGGGGTCAGGGAAAGGNTCTNCACCAGAGGGCGGTCGGGCACTGGAACAGGCTNCCCAGGGCAGTGGGCACGGCCCCGAGCTGCCGGAGTTCAAGGAGCGTTTGGACAACGCTCTCAGACACAGGGTTTGGATTTTGGGTGGTGCTGTGTGGAGCCAGGAGTTGGACTCGGTGATCCTTGTGGGTCCCTTCCAACTCGGGATATTCTATGATTCTATGATTCT
>CR1-X1#LINE/CR1 GG000915 (part), GG000575, GG000077
CTTTCCTGTGAGGTGCTCTGCTCCAGGGCAGGTGNACGCCGTGCCGAANCANGNAACNGNCTTGGTGGGCGGAGGGGTAGCCCCTGTCAGGNAGNAGCTGCCAGGCGCCACTGTCCTCCTGTGGCGGCAGTGCTCTGACGCGGCGTGGGCGGAGCCGGGAGCGGNGGCGTCACACCCCGCACATACAAAGGCTGTTCCCAGGGAGCGCAGTGACCCAGGAGCATGGTANCAGGACATGCAAACAGGGCATGGCGCGTCAGAAGGGCATGGTGCGGCAGTTTGCGCGGGCAGTTCGTGCAGGGCAGGGAGGGCGAGCAGGGCGGGCTGCTCTTCTCATCTGGGGNCGCGAGGGNGCGGCACTCTATTGAAACNAACATGGTGACCACCCGCCGCAACGGCCGGGCTGAGGCAGAAACCCAGACNGAGGGGCCACAACCTTTCTGGGCTGACACGTGCACCCAGACGGACCTCCCGAGGAGCGANAGAGCTGCCCAGACCTCCGGTTGTGGGGAACTCCAGAATCTGGAAGTCCCCCAAGGGCCTGAGGNAAGNGGGGGGTGTCACGGGTGCAAGTGCGCCCAGCTTGATGAACTTTTTGAGCAGGTGGCCAGGCTGCGAGAGGAAATCGCCAGGCTGAGANGTATCCAGCAATCAGAGAGAGAGATTGATGCGTGGTATCGTGCAGTGACACGGGCAGACCGACAGCCCTGTCTTAAGTCCCNGCAAGGGGAAGAAGATAAGCAGGCTTCCAACCTGACAGAGGGCAAANACATGCAGGATGAGGGAGACTGGACCCTCGTCTCTGCTCGGGGCAGAAGGAGGAGCCTCCCCCTTGCCCCTGAAGTCCCCCTAGCCAACAGATATGAAGCTCTGGGGATGGAAAGAGAAGAGGGTGTGGATAGTGGTTCGGAACCGGAAAGGGGCAACCACGTTAAGANGGTCCAACCGAGGACCCGAGTCAGAACCAGTGCCACTAAAAAAAAGGCGAAGGGTCTTAGTAATTGGGGACTCCGCGCTGAGGGGCACTGAGGCACCCATTTGCCGCCCGGATAATCTCTCTAGAGAGGTTTGCTGCCTGCCGGGGGCCCGCATTCGGGACATCAGGAAGAGGCTACCAGGTATGATAAAGCCGGAGGACTACTATCCACTCCTGGTCTTTCAAGCTGGGTCACANGAGGCTGCAACTAGGAAATTANAAAATATTAAAAAAGACTTTACGTCCCTTGGGAAGATGTTGAAGGGATCGGGAGCACAGGTAGTGTTCTCCTCGGTCCTCCCGGTTGGAGACTGGGANCCGGGCAGAAGGAGGAGAACGGACCAGTTGAATGAATGGCTGCGTGGATGGTGTCACGCTCAGGGCTTTGGGTNCTATGATCTNGGACGCACCTTCGATAGACCGGGCATGTTGACGTCGGATGGGACGCAACTGACCAGGAGGGGCAAGAATATACTGGGCAGCAAGCTGGCTGGGCTCATCACCAGAGCTTTAAACTAGATTTGATGGGGGAAGGGGATGTACTGCTGAGTGACAGAGAAGAGCCAGGGAACACTGTCACTTTAGGAAGCAGCAGGGGAAAACCTCAGATTTGTCCCAGAGGANTTTGGGAGGGCTCCTCCAAGAAGGTAACGCGGCCGATAGCCCAGCTGAAGTGCCTCTACACCAATGCACGCAGCATGGGAAATAAGCAGGAGGAGNTGGAAACCGTGGTGCAATTGGAAAACTATGACCTAATTGCTATCACGGAAACATGGTGGGATGANTCACACAACTGGAATACTACGATTGAGGGCTACAAGCTTTTTAGAAGGGATAGGCAAGGTAGGAGGGGCGGGGGAGTTGCCCTCTATGTTAAGAAGTGGATAGACTGTGAAGAGCTGCCTCTGAGAAACAGCCACGANCAGGTTGAGAGCCTGTGGGTTAAAATTAGGGACCGGACCAATAAAGGACATCTGGTGGTCGGGGTCTACTACAGGCCGCCTGATCAAGGGGAGCCTGTTGACGAGGCCTTCTTGCTTCAGCTGCAAGAGGCGTCGCACTCGCAGGCTCTCATCCTGATGGGGGATTTCAACCACCCGGATATCTGCTGGGAAAACAACACGGCGAGCTGCAAGCAATCCAGGAGACTCCTGGAGTCCGTTGANGATAACTTTCTGGTCCAGGTATTGGACAGACCGACCAGAGGTGAAGCGTTGCTGGACCTGGTGCTCACCAGTGCGGAGGAGATCATTAAAGAGGTTAAGATCGGAGGCAGCCTGGGCTGTAGTGACCATGCCCTGGTTGAGTTCGTGATCTCGAGGAATGTGGGCCTGGCAAAGAGTAGAGTCAGGACCCTGAACTTCAGGAGAGCAAACTTCAGGCTGTTTAAGGAATTGTTGGACGAGATCCCCTGGGAAACTGTCCTTAGGGACANAGGAACGGAACAGAGCTGGCAGCNCTTTAAGGACGCCTTTCTGAGAGCGCAAGAGCTCTCCATCCCCCAGCATAAGAAATCAGGCAGAGGAGGCAGGAAACCGGCGTGGCTGAGCAAGGACCTGCTGGTCAAACTGAGGGANAAGAAGGAAANGTATAGGCAGTGGAAGCAGGGATGGGTGGCCTGGGAAGAATACAGGGATGCTGTCCGGACGTGCAGAGATGGGATCAGGAAAGCCAAGGCGCAGATGGAANTGAACTTGGTGAGGGATGTGAAAAACAACAAGAAGGGNTTCTNCAGGTACATTGGTCAGAAGAGACAGGCAAAGGAGAGTGTACCCCCTCTGATAAATGAGAAGGGAGAACTGGCTTCANCAGACATGGAGAAGGCTGAGGTACTCAATGAGTTCTTTGCCTCAGTCTTCACTGGCAGTCAGGCTTCCCATGCCTCTCGTGTCCCTGAACCTCTAGGCGGGGGTCGGGGGAGCAAAATCCCTCCCACTGTAAGAGCAGAGCAAGTCCGAGACCACCTCATGAGGCTGAATGTGTACAAGTCTATGGGGCCGGATGACATGCATCCCAGGGTCCTGAAGGAGCTGGCTGATGTGGTTGCCGAGCCGCTCTCCATCATATTTGAAAAGTCGTGGCTGTCAGGTGAAGTCCCCAGCGACTGGAAAAAGGGAAACATCACTCCCATTTTTAAGAAAGGGAGAAAGGAAGACCCGGGGAACTACAGGCTGGTGAGCCTCACCTCTGTGCCTGGGAAGATCATGGAGCAGATCCTCCTGGAAGANATGTTAAGGCACATGCAAGATGAGGAGGTGATCCGAGACAGCCAGCATGGCTTCACCAAGGGCAGATCGTGCCTGACCAATCTGGTGGCCTTCTATGATGGAGTGACGGCATCGGTGGACAAAGGAAGGGCAACTGATGTCATCTACCTGGACTTGTGCAAGGCCTTTGACATGGTCCCNCACCACATCCTTATCTCTAAATTGGAGAGGTATGGATTTGAAGGNTGGACTATTCGGTGGATAAAGAACTGGTTGGATGGTCACAGCCAGAGGGTTGTGGTCAATGGCTCTATGTCCAGGTGGAGGCCAGTCACGAGTGGTGTCCCCC
>CR1-X2#LINE/CR1 GG000915 (part), GG000575, GG000077
CTTTTCTGCGAGGCACTCGGCTCCGGGGCGGACGCATTCCGTGCCGAAGCAAGGAATCGCCTCAGCAGGCGAGGGGAGCNCCTGTCAGGGAGCAGCTGCCGGGCGCCATTAGCCCTCCTCGTGGCGGCAGCGCCCTGACGCGGCGGGGGCGGGGCCAGGAGCGGCGGGGCCACNCCCTGNGCATACAAAGGCGGCCANCAGGGAGCGCAGTGACCCAGGAGCANGGCGAACAGGACGGGCAAACAGGGCGTGGCGCGTCAGAAGGGCGTGGTGCGGCAGTTTGCGCGGGCAGTTCGTGCAGGGCAGGGGGGGCGAGCAGGGCGCGCTGCTCTTCTCATCCAGGGCCGCNAGGGGAAAGCTCTCTATTAGTACCAACATGGTGACCACCCGGCGTGGCAGACAGGCNGAGGCAGAAACACAGACGGGGGGCCCACAACCTCTCTGGGCTGACGCGTGCACCCAGACGGACCTCCTGAGGAGCGAGAGGGCTGCCCAGACCTTTGGCTGTGGGGAGCTCTGGAATCTGGAGGTCACCCGAGGGACTGAGGTAGGTGAGGGGTGTCATGGGTGCAGGTGTGCCCAACTTGATGATCTTCTTGAGCAGCTGACCAGGCTGNGAGAGGAAGTCGCCAGGCTGAGATGTATTCAGCAGTCTGAGAGAGAGATTGATGCCTGGTATCGCGCGGTGGCACGGGCAGACAGACAGCCCTGTCTTGGGGCCCAGCCAGGGGAGGAAGATAAGCAGGCTTCCNACCTGACAGAGGGTAAACACGTGCAGGGTGAGGGAGACTGGACCCTCGTCTCTGCTCGGGGCAAAAGGAGAAGCCTCCCCCTTGCTCCTGAAGTCCCACTAGCCAATAGATTTCAAGCTCTGGTGTGGGAGAGAGAAGAAGGTATGGATAGCGGCTCGGAACCGGAAAGGGGTGATCACATTAAAAAGGTCCAACCGAGGACCCGAGTCACGACCAGTGCCGCTAAAAAAAAGGCGAAGGGTCTTAGTAATTGGAGACTCTTTGCTGAGAGGCACTGAGGCGCCCATCTGCCGCCCGGATAACCTCTCTAGAGAGGTTTGCTGCCTGCCGGGGGCCCGCATTTGGGACATCAAGAAGAGGATATCGGGTATGATAAAGCCGGATGACTACTATCCCCTCCTGGTCTTTCAAGCTGGGTCGCACGAGGCTGCGACCAGGAAATTAAAAAATATCAAAAAAGACTTTACGTCCCTTGGGAAGATGTTGAAGGGATCGGGAGCGCAGGTAGTGTTCTCCTCAGTCCTCCCGGTTGGAGACTGGGATCCGGGCAGAAGGAGGAGAACGGATCAGTTGAATGACTGGCTGCGTGGGTGGTGTCACGCCGAAGGCTATGGGTTCTATGATCTAGGACGCACCTTCGACAAACCAGGAATGTTGACGTGGGATGGGACGCAACTGACCAGGAGGGGCAAGAATATACTAGGCAGCAAGCTGGCTGGGCTCATCACCAGGGCTTTAAACTAGAGCTGCTGGGGGAAGGGGGTGTACTGCTGAGTGACAGAGAAGAGCCAGGGAACGCTGTCACTTTAGGAAGCAGCGGGGGAAAACCTCAGATTTGTCCCGGAGGTTTGTGGGAGGGCTCCTCTAGGAAGGTAATGCGTCCGAAAGCCCAGCTGAAGTGCCTCTATACCAATGCACGCAGCGTGGGAAATAAGCAGGAGGAGTTGGAAACCGTGGTGCACTTGGAAAACTATGATCTTATTGCTATCACGGAAACATGGTGGGATGATTCGCATAACTGGAATACCACCATTGAGGGCTATAAGCTTTTTAGAAGGGATAGGCAAGGTAGGAGGGGTGGGGGAGTTGCCCTCTATGTTAAAAAGTGGATAGACTGCGAGGAGCTCCCTCTGAGNAACAGTCAGGAACAGGTTGAGAGCCTGTGGGTTAAGATTAGGGATGGGACCAATAAAGGACAGCTGGTGGTCGGGGTCTACTACAGGCCACCTGATCAAGGGGAGCCTGTTGACGAGGCCTTCTTGCTTCAGCTGCAAGAAGCGTCGCACTCGCAGGCTCTCATCCTGATGGGGGATTTCAGCCACCCGGATATCTGCTGGGAAAACAACACGGCGAGCTGCAAGCGATCCAGGAGACTCCTGGAGTCCATCGACGATAACTTTCTGGTTCAGGTATTGGACAGACCGACCAGAGGTGAAGCGTTGCTGGACCTGGTGCTCACCAATGCGGAGGAGATCGTTAAAGANATTAAGATTGGAGGCAGCCTGGGCTGCAGCGACCATGCCCTGGTTGAGTTCGTGATCTCGAGGAATGCGGGCCTGGCAAAGAGTGGAGTCAGGACCCTGAACTTCAGGAGAGCGAACTTCAGGCTGTTTAAGGAATTGTTGGACGAGGTCTCCTGGGAAGCTGTCCTTAGGGACAAAGGAGTGGAGCAAAGCTGGCTGCTCTTTAAGGATGCCTTTCTGAGAGTGCAAGAGCTCTCCATCCCTCAGAATAAGAAAGCAGGCAGGGGAGGCAGGAAACCAGCATGGCTTGGCAAGGACCTGCTGGTCAAACTGAGGGAAAAGAAGGGCATGTACAGGCAGTGGAAACAAGGACGTGTCACCTGGGAAGAATACAGGGATGCTGTCCAGACATGCAGAGATGGGATTAGGAAAGCCAAGGCACAGATGGAACTGAACTTGGCGAGGGATGTTAAAAACAACAAGAAGGGGTTCTGCAGGTACGTTGGTCAGAAGAGACAGGCCAAGGAGAGTATACCCCCTCTGATAAATGAGAAAGGAGAACTGGCTACAGCAGATATGGAGAAGGCTGAGGTACTCAGTGAGTTCTTTGCCTCAGTCTTCACTGGCAGCCAGGATTCTCGTGTTTCTCGCATCCCTGAACCTCTNGGTGGGAACTGGGGGAGCAAACTCCCCCCCACTGTAAGGGCAGAGCAAGTCCGAGACCACCTCATGAGACTGAATGTGTACAAGTCTATGGGGCCGGACGACATGCATCCCAGGGTCCTAAGGGAGCTGGCTGATGTGGTTGCTGAGCCACTCTCCATCATATTTGAAAAGTCGTGGCTGTCAGGCGAAGTCCCCGGNGACTGGAAAAAGGGAAACATCACTCCCATTTNCAAGAAAGGGAGGAAGGAGGACCCGGGGAACTACAGGCCGGTGAGCCTCACCTCTGTGCCTGGGAAGATCATGGAACAGATCCTCCTGGAAGACATGTTAAGGCACATGAGGGATGAGNAGGTGATCCGAGACAGCCAGCACGGCTTCACCAAGGGAAGGTCGTGCCTGACCAATCTGGTGGCCTTCTATGATGGAGTGATGGCATCGGTGGACAAAGGGAGGGCAACTGATGTCATCTACCTGGACTTGTGCAAGGCCTTTGACATGGTCCCCCACCACATCCTTATCTCTAAATTGGAGAGATATGGATTTGAAGGGTGGACTATTCGGTGGATAAGGAATTGGCTGGAAGGTCACAGCCAGAGGGTTGTGGTCAATGGCTCTATGTCCAGGTGGAGGCCAGTGACGAGCAGTGTCCCCC
>CR1-Y#LINE/CR1 with an interesting (TTCTGTGA)n tail. 5' end not fully defined . ORF1 incomplete (bp < 619-1458), ORF2 (1380-4427) product closer to Platemys (turtle) CR1 than to that of chicken CR1-A. @general @gallus
CTGTGCCACCATGGGCACTGATGCAGTGTGGGAGGAGTCAGGAGTGATGGCAGCCAGCNCGCCGGGCGCACAAAGGCGGCTCCAGCAGGGGGCGCAGTGACCCAGGACTGCAGTACAGAATGAGTGAACAGGGCGTGGCTTGTCAGAAGGNCGTGCTCGGCAGTTAGCGCGGGCAGTTCACGCGGGGCAGGGAGGGTGGGCAGGGCGGGCCCTCTTTTTCTCTCTCTCCTCTTCCTTTGAGAACTCTAGGGTGTTACCGCCTCTTTATACTATCATGGTGGGCACCCGTCGCAGCGGCCGGGCTGAGGCAGCGACGCAGACCGAGGGNACACAGCCTCTCTGGGCTGATGTGTGCACCCAGGTGGACAACCCANGGAGTGAGGCAGCAGTCCAAACTGTTGACTGCGGGGAGCTCCGTAATTTGGAGGTCCCCCTGGGTCCTGAGGGAGGAGAGGGCTGTCATGGCTGCAGGTGTGTCCTGCTCAAGGAGCTGCTTGAGCAGATGGCCAGGCTGCAGCGAGAAATCAGCAGCCTGAGGGGCTCCCGGGAATCTCTGAGGGAGACAGATAGGAGGTGATGTGAACCTACTCCCACTGCAGACACGCAGCCNCCTCCTAAGTCCCTGCAAGTGGAAGTAGCCAATCCAGCTGCTCACCTGCAGGACAGAGGNCTAGACAGCCCGCGAGAGGAAAGGGGCTGGACCCTCGTCTCTGCTCGAAGCAGAAGGAGCGTCTGCCCCCAGCACCCACAGTCCCACCAACCCCTGCAGTGTCCCCTGCAGTGTCCCTGAGTAATAGATTCGAGGCTCTCGGGCCGGACAGGGATGAGGGTCTGGAAAGCAGTCCAAACCCATGCCCTGAGAAGCACATTGAGAATACAGGGAGTAACAAGCACAGGGAGCGGGGCCGGTCAGGGCACTGCATCAATACCAGTGCCACCAAAAAAGGGCGGAGAGTCTTAGTAATTGGGGACTCCTTGCTGGGGGGCACTGAGGCTCCCATTTGCCGCCCGGATAATCTCTCCAGAGAGGTGTGCTGTCTTCCAGGGGCGCGTGTTAGAGACATTAGGAAGGCTCTACCACAGCTCATTAAACCGGAAGACTACTATCCTTTTATTGTCATTCAGGCTGGGTCCCGGGATGCTGCAATGAGGAAACTAAAGAATGTTAAAAAGGACTTTGCATCCCTTGGAAAGATGTTGAAGGGATCAGGGGTGCAGGTAGTGTTCTCCTCTGTCCTTCCGATGGGTAGCTGGGACCCAGGAAGANGGAGGAGAACATGTCAGGTAAATGACTGGCTGAGGGGGTGGTGTCTTGATCAAGGCTTTGGGTATTTTGATCTCGGGCAGGCCTTTGAGAAACCGGGTATGTGGGCTCCTGATGGACTCCGACTGAGCAAGTGGGGCACAAGTGTTCTGGGGAGCAAGCTCTCTGGATTGATTACCAGGGCTTTAAACTAGGTTCGAAGGGGGAAGGGAGGGGAGTTAGATGTGACAGAGAAGGGCTGAGGGATGTTGTCACTGTTGGAGATTGCAGGGAAAAACCTCTGAGTTGTCCCATAGGATCGTGCGAGGGCTCCTCAGAGAAGGTCACGTTGCCGATACCCCGTCCAAAATCTTCTTGCGTCCCTCTAGGGGTAACTGCACCTGCTGCTTCCCTAAAGTGCCTGTATACCAATGCGCGCAGCATGGGAAATAAACAGGATGAGCTGGAGATCTGTGTGCGGTCGCAGGGCCATGATCTCATTGCAGTCACGGAGACGTGGTGGGACAGCTCGCATGACTGGAATGCTGTCATGGAGGGCTATGTCCTTTTTAGGAAAGACAGGCTGGGGAAGCGAGGTGGAGGAGTTGCCCTTTATGTGAGAGAGCAACTAGAATGTATTGAGCTCCACCTGGGGGAGGGTGAAGAACGTGTGGAGAGCTTGTGGGTGAGAATTAAGGGGCGGGCTAGTATGGGTGACACCGTTGTGGGNGTGTACTACAGGCCACCNGATCAGGAGGANGAAGTCGATGAGGCCTTCTACAAGCAGCTGGAAGTAGCCTCGCAATCCCGGGCACTGGTTCTCATGGGGGACTTCAATCATCCAGATATCTGTTGGGTAAGCAACACGGCCAGGCACACGCGGTCCAGACGGTTCCTGCAATGCGTTGAAGATAATTTTCTGACGCAGGTGGTGGAGGAGCCAACGAGGCGGGGGGTGCTTCTGGACCTTGTTCTTACCAACAGGGATGGGCTTGTTAGGGATGTGAAGGCTGGGGGCAGCTTGGGATGCAGCGATCATGAGATGGTGGAGTTCAAGATCTTGNGTGGAAGAAGCAAGGCAAAAAGTAGGATTGCTACCCTGGACTTCNGGAGAGCCAACTTCGACCTCTTCNGGGACCTACTTGGAGGTATCCCATGGGCTAGAGTGTTAGAAGGTAAGGGGGCCCGTGAGAGCTGGNCAGCATTTAAACAGCACTTCTTCCAAGCTCAAGATCGGTGCATCCCTAAGAGTAGGAAATCGGGGAAGGGNGGCAGGAGACCTGCGTGGATGAGCAAGGAGCTCATGGATAAGATCAAAGGGAAGAAGAAGGTCTATGAAATGTGGAAAAAGGGCCTGTCCNCTTGGGAGGAGTATAGGAGTGTTGTCAGGGCCTGCAGGGATGCGACGAGGAAGGCTAAAGCCCACCTGGAATTGAANCTGGCAAAGGAGATAAAGGATAACAAGAAAGGTTTTTTTAAGTATGTCAACAGTAAAAGGAAGACTAGGGAAAATGTGGGTCCCCTGCTGAACGAGGGGGGTGTCCTGGTAACAGGGGATGCTGAGAAGGCGGAGATGCTGAACGCCTTCTTTGCTTCGGTCTTCACTNCAAAGACTCCCCCTCGGGANTCCCGGACCCTGGAGGTAAGAGAGAGAGTCTGGGAAATGGAGAGCTTCCCTCTGGTTGAGGAGGGGNTGGTCCGAGAGCGTCTAGGCGGGATCAATGTGCACAAATCCATGGGCCCCGATGGGATGCATCCACGTGTGCTGAGGGAGCTGGCAGAGGTGATTGCTGAACCGCTCTCTATCATCTTTGANAGGTCTTGGAGAACGGGAGAGGTGCCTGAAGACTGGAGGATAGCCAATGTCACTCCGGTCTTCAAAAAGGGCAAGAAGGAGGATCCGGGAAACTACAGGCCAGTCAGCCTCACCTCCGTCCCTGGAAAGGTGATGGAACAGCTTGTTCTGGATGCCATCTCCAAGCAATTGGAAGAGAAGAAGGTCATCAGGAGTAGTCAGCATGGATTCACCAAGGGGAAATCATGCTCGACCAACCTNGTAGCCTTCTATGATGNCATCACCGGCTGGGTAGATGGGGGGAGAGCAGTGGATGTCGTCTACCTTGACTTCAGCAAGGCTTTTGACACTGTCTCCCACAACATCCTNATAACGAAGCTGAGAAAGTGTGGGATAGATGAGTGGACGGTGAGGTGGGTTGAGAACTGGCTGACTGGCAGAGCTCAGAGGGTTGTGATCGGTGGCGCAGAGTCCGGTTGGAGGCCTGTGACTAGCGGTGTTCCCCAGGGGTCGG
>CR1-Y_3end#LINE/CR1 with an interesting (TTCTGTGA)n tail.
ATGTCGTCTACCTTGACTTCAGCAAGGCTTTTGACACTGTCTCCCACAACATCCTNATAACGAAGCTGAGAAAGTGTGGGATAGATGAGTGGACGGTGAGGTGGGTTGAGAACTGGCTGACTGGCAGAGCTCAGAGGGTTGTGATCGGTGGCGCAGAGTCCGGTTGGAGGCCTGTGACTAGCGGTGTTCCCCAGGGGTCGGTGCTGGGTCCGGTCTTGTTCAACATCTTCATCGACGACCTTGATGAGGGGATAGTGTCCACCCTCAGCAAGTNTGCTGATGATACAAAGCTGGGAGGAGTGGCTGACACACCNGAAGGCTGTGCTGCCATTCAGCAAGACCTGGACAGGCTGGAGAGCTGGGCAGCGAGGAACCAGATGAGGTTTAACAAAAGCAAGTGTAGAGTCTTGCACCTGGGGAGGAATAACCGCATGCATCAGTACAGGTTGGGGGATGACCTGCTGGAGAGGAGCTCTGCGGAGAAGGACCTGGGGGTCCTGGTGGACGACAGGTTGGCCATGAGCCAGCAGTGTGCCCTGGTGGCCAAGAAGGCCAATGGNATCCTGGGGTGCATTAAAAGGAGCGTGGCCAGCAGGTCGAGGGAGGTGATCCTCCCCCTCTACTCTGCCCTGGTCAGGCCTCACCTGGAGTACTGTGTCCAGTTCTGGGCTCCCCGGTACAAAAAAGACAGGGATCTCCTGGAGAGAGTCCAGCGGAGGGCCACAAAGATGATAAAGGGCCTGGAGCATCTCCCTTATGAGGAAAGGCTGAGTGACCTGGGTCTGTTCAGCCTNGAGAAAAGAAGACTCAGAGGGGATCTNATTAATGTTTATAAATATCTAAAGTGTGGGAGNCAAAGGGACGNGGCCAGNCTCTTTTCAGTGGTNCGTGGNGATAGGACAAGGGGAAACGGCCATAAACTGGAGCATAGGAAGTTCCGCACCAATATGCGAAGGAACTTCTTCACGGTGAGGGTGACGGAGCACTGGAACAGGCTGCCCAGGGAGGTTGTGGAGTCTCCTTCTCTGGAGATATTCAAGACCCGCCTGGATGCCTACCTGTGCAGCCTGCTGTAGGGAGCCTGCTTTGGCAGGGGGGTTGGACTCGATGATCTCTAGAGGTCCCTTCCAACCCCTACAATTCTGTGATTCTGTGATTCTGTGATTCTGTGA
>GGLTR7-int#LTR/ERV1 GG000030, GG000178, GG000004, GG000087, GG000931, GG000523   No complete ORFs reconstructed (strong matches to pl-pro between bp 2053-5034,  to env between 5772-6122). Either a currently active subfamily exists with ORFs, or an element has been exapted a while ago, as pos 5036-6349 correspond to a protein  called FET-1 (Reed,K.J. and Sinclair,A.H. FET-1: a novel W-linked, female specific gene up-regulated in the embryonic chicken ovary Gene Expr. Patterns 2 (1-2), 83-86 (2002).  GGLTR7B internal sequences have different 3' region. 6-7% subst, but much of this due to subfamilies (LTRs 3-4% div). @erv @gallus
ATTTGGCACCCCAGATGGGACCCACTCTGTTCGGCTGCAGGACCGGCTGAGAGAGGGGACACCTTTGGCGCGCCCCAAGATTTCTTGGAAGGACTCCCTTCCTCACCCGATCACTGCGGGGACAGACAAGGACCATCCATAGGCGGACCAGGTATGTGTATGGAAAAGGGGGAACCCGTAAGGCGTGAGGAGACGTCCTACGCAGGGTATGAAGGAGCGTGCCTGCTCCCCCCCCCCGAGGTACGTGAGCTCACGGGTTAGGTTGCCGGCTGGGGTAGGAAGACTCCTTGGGGAGTTCCTACAAAGGGGACCTGTAAGTCGTACGCGAGGAAAGAGCAACAGCTCTCCCTTAGGTGATTGGTAACAGCGGGGATTTTGTCAAATGATAGCGTGGATTCTCCTGGAGATAGTAGTGGGAGTTATAGGTTGTATTATTGTTATCACCATCTGCTGAGTGTTCGGTACCGTGTATCTAATCATTTCAGGTCAAGCTGACTTTCGGAAAAATCTTAAAGCTTGCAGCTGATCGACTAATGTACTAGTGTTATTAAGATTCCAGCTAAAGGACATCGTCAGCACTGTGTATTATGTATAAACCATGGTTTTTGTTCTAAATGTCAGAGTGAGTGTGGTGTGAGTGAGACGCGTTCCATTCAGGGAGTGAGTGTCAGTCCATTTATGTAGTACTGTGTTCCGATTGTGGGGAAGAGTGTAAAGGAAGGTGGACAGGCTTCTGTGAGATCTGTTTCCAAGTGTTTATAACTGAACAATATCACTATACGGTGTTAAGGGCTGTTTGTGGAAACTTTGAGGAAATTAGGAATCAATAAGAATTGTGTAAACATCATGGGAGGCTCCCAGGGGAAGGAAATTCCCAAACAAACCCCTTTGGGATGTGCATTGGCACATTGGTGGGATATTGCAGGGGAACCTGGAGGCACCCTGAGTAAGAAAACTTTAATCAAGTATTGCAATCAATGGTGGTTAATATATAAGTTAGAAGATGATGAGAAGCGGCATCGGAATGGGACCCTAAACTACAATGCCTTCTTACAGTTACTGTTATTCTTAAGGAGAGAAGGTAAATGAAGTAACATGAACAGTTTTTAGAATTGAGTGCTCTAATCACGAGACTAAGTACTGAGTGTTTGTGGAAACTGAAGAACTGTATTGTTTAATTTGTGGGTTCTGAAGGGAATGGGACAAACAGTTTTGATGGTATAAGTCAGTGTAATTGTTAATGGTATACAGAAGCTTGATTGAGGGTATGTGGAAATGTAACTGAGGGTATGAAGTGGACAAAGGAAAAAGGGTTAAAGATGAAGTGAGTTTATCTGCACTGGCATGAGAGCAGCCCCCCCGCACCACTCCCCTGCGAGCAGAACTCTCGGAGTGAGAGTGCCGGAGTCAGAGACTGCTGTTGCAAACAGCATTACTTGCGAATGGGGGGAGATGGAGAGGATGGGGTACTGGCAGTGAGAATAGCCTTCATGTGCAGAGATCTAGGAAACCCAAAGTTCCAGTGTTAGCACTGGAAATCTCTGGAGAGGAGGAGGTGAAACTGAAATGTAATGTTAGTACTAGTACTTTATGTAATGATGAGAGTTTGGAAAGTGAAAAGTTTGAGAAGGACGCAGGCTGAGGAAGGCAAAGATGAGCAAGGTGTAACAGGGATGTCAGAACCAAAGAGGGTGAGCAATATGAAGAAAAAAAATAATTGAGAAACAGAGATAGTAAGGAAATTGGAAATAGCAACAGCTGTTACTGTTGCGGTGCTAGAGTAGAGTTGTAAGACCCAGAGGTCCCCTTAGAAAGAGGTAAAGGGAGGGGCCTGGAAGAACCCACGGAGGGTTCCACCCCTGCNGGACTGNAAGCAGTGTGCAAACTGCGGGGAAATGAGACATTGGGTGGAGAAATCCAACCGTCTCTGATTGCAAAAGCTGAATGATGGGAACCTGGGAAGTTNNCCCTAGCAAATCCACTGGTTAAATTGCAGCTAGGAGAGCAGGATAAAGAGGTTTATTTTCTGGTGGGTACGGGTGCCTCTTACCACCCATAGATGATTTTGCAGCAGTAGTAGGAGCTACTGCCCAACAAGAAAGAGCTTACCTTTTGGNATCAACTAAATATGGGCTGNGAAAACAAGTAGGAATACATACATTTTTGTACATGCCAGGTTCTCCAAAACTGTTACTCGGGCAAGACTTATTAAGACAAATGGATGCAGAGATTAAATTCAATAAAATTGGAGCTAAGGGTCAAACAATATTAACTGACTGAAAATTATAAGTCTGGCTTTAGCACAAACTGGGAAAAACAATGTTGTACCCCCAGAAGTTACAGAAATCTTCAATAAGGTATGCTTAGGAGTGTGGGTATCTGGGATACCTGGTAGAGTCAAAATGCAGCCCAAAGTTAAAAGCAAGAGCTAGCCCAGTCAGGGTAAAGTAGTGCCCTTTGAGGATATGGAACTGTAGGATAGAAGGATAAAAGAAATAATAGATAACTTTTGGGATTTTGGATTACTAATTGAATATGAATCCAAATACAGTACTCCAATCTTGCCAGTGAAAAATTGGATAGCAAGTGCTATAGTTTGGTACAAGATTTGAGGGCAAGTAATAGAACTGTTAAATGCATACACTCAGTGGTGGCAAATCCATACACTTTATTAACCAAGTTAGGGAATGAGTAGGTGGAGTTTACCTTCTGGATTTGAAGGATGCCTTTTCTGCCTGGTTTGGCCAAAAGAAACTTGTTATTTGCCTTTAAATAGGAAACCCCTAATATGGGAAGAAAAACACTCAGTTAACCTGGACAGTGTTAGCCCAGGGCTGTGAGAATGGCCCAANGGTTTTNGAGAACTGGTCAACTCGGGAGCCTGAGATTTGGGTTCCTCCATCCCACGGTGGAACTTGACTGCAGCATGTGGATGCCACAGAAACAAAGAGGGCTGTGTGCAATGGACTGCGAATGTGCTGAATTTCTTGGTTTCAGTGATGATCGACTTTCTCAACAGAAGGCACCAAGAACTCAACGGCAAGGGACCTATCTGGGATAGGAGGCTACAGCTGGACTTGGAACCTCAAGGACTGCCAGGAAAGAAGCCATCTGCCAAAGCCCTGAGCCACAAAGTGCCGAGGAACTCCGTACATTCTCAGGAATGACAGCAGGGTGCCAACCGTGGATACACGGCTACGGACTGGTGGTAAAGCCCCTTCAGGAAGTGAGAGAAGAGTGGTTGAGGGCGGTGGCTGCACCAGTGCTCAAGATTCAAGAACCTGGGACATCTACGCTAGGCCAAAGAATAACAGTTGGAATATCTCATACAGTGTCTATACTGTTTTGGAGGTAAAAGGGGGGCATGGGCTCTCACCCCCAGGGGTTCCTGAAATACCAGGCCATCCTGGTACAGCAGGATGATGCAGAAATAACTGCAACTAATATTGTCAACCCAGCATCTCTCCTTAGCGGAACTCCCGGAGAACCAGTATTTCATGACTGCTTTGAAACAACTGNGGCTACGGACTGTTGCCAGTCGGACCTGAAAGACGAATCCTTAGAAGATGCAGAAGACACCTGGCTTACTGATGGAAGCAGTTTNGTGAGACAAGGAAACCGTAAGGCAGGATATGCAGNAACTGCTACTGACAAGGTNACCGAAGCACAACCATTACCTGGGGGGACTTTCTCTCGGAAGGCTGAAATAACTGCCTTGACAAGAGCCTGAAATATACGGACAGATGCTAATTATGTATTTGGGATGCTACACGCTCATAGCACCATCTGAAAAGAGCAAGGATTGCTCACACACAAGGAAAAACAGCATGATGTAAATCTACCAAAGAGCGTGGCTATTATACATTGTAAAGGACATCAGAAAGGGAACACTGTACAGGAAACTGGAGATAAGATGGTGGATCAGGTGGCAGAACAGGTAGTTGAAGAGGGCTTTAATTCCAGACCGTAAACTTAAAATTTCTGAACCTGAGTCAAAACCTGTAAAATATTTTAAAGAGGATAGCAATCTAATTAATGATTTAGAAGGGAAGAGAGCAGGCTGACAGATGGACACGTTGTTTTGCCCTTTGGTATTCTATGGAAATTGGTTCTAAGGGAGGATAAGAAAATGTATTGGGCAAACGGACATTACAAAGTACGATCCTAGTACCAGGAAAGGGGTNCAAGTGGGCCTATTGGGAAAGGGAACCTTCCAGGGCAACAGTGACAAATTGATTTCTTGAAACTCCCAAGAAAAGGGGGGTATCGCTGTATGTTGGTACTAACTGATACCTTTTTGGGATGGCCAGAGGTATTTCCCTGTAGGACTNATAAGGCTCGGGAAGTAACGAAAATGCTGTTACATGCTGTTAATTCCAAGGTTCGGGGTTCCTGTAGCAATCTCATCAGATCGAGGCCCACATTTTTGCCAAGGTGGTCCAAACAAATAAGCACATTATTGGGAATTGATTGGCAATTGCACACACCTTATAGACCGCAGTCAAGCGGACAGGTGGAAAAAACGAATCACCTGATCAAATTACAGATAGTAAAACTTGGCCAAGAGGCTGGGATTCCCTGGCCGCAGGCACTGCCTTTGGCACTTCTGAGAATTCGGACTAAACCCCGAACCAAGGAAGGATTAAGCCCACATGAGATTCTTTATGGGCGACCTTATACTGTACAAAAGGAAATCTCTATGCAGGTGGGGGATAAGGTGTTGAGTGAATATATGGTCAGCTTGGCGAAGCAATTAAAGAAAATTGAACAAGCAGTATTCGGTGCCAGGGCACGAGGCCTAGATGGTCCAGTGCATGATGTATTGCCAGGCGACTATGTTTATGTTAAACCTCTCTCTCAGATTCACCTCTGGAACCAAAGTGGGAAGGACCCTACCAANTTCTCCTGACCACCCACACCACNGCCAAGGTAGAGGGACTTACACCGTGGATACGTCATACCCGCCTGAAGAAAGCACCAGGACCACAGCGGACAGCAGAAGAGAGAGGACCACTGAAAATCAGGATCCGAAAGCATGTATAAGANTTTGATAATAGTCAGTATGATTGGAGCAGTAGTCACAGCTTGGCAAGAGAATAGCTACTTNAGAATAACTGAGAAAATTGGCCAGGCTCTCAACAAATCTTGTTGGATATGCACTGCCCTCCCTAGAGGGGAGGGAAAAGTGCCCGTTTATGGGATAGTGGCACTAAATTGGACCATTCCAGATTGGGTAGAGCACGGAAAGTGTAAGTTTGGGATAGAAGACAAGCCACAAAAGGGACCTAAGTTTGATTTACTAGTTATTAACTCTACTAGATCTATCTTTGCAGACAGAAAAACTGACGGTAAAGGTGGGGTGGGGGTTGGCTGACGGAACTTGACAGGCATAGGGTGTAGTTGGGAATACAGAAACTCTGGGGCAGTATCAGGGATCAGTGAAGCTGGAAGGTGGAACCAAGGTGNGGGGTGTGATCCTAGAATCGATAAGGAGTCACACTGGCTCTCAGATAAGAACGTACTCGGAATTGTAGGGATGGGAGCATCGTTCACTCNTCAGGAAAAGATGGCCAGGCCATGTCAGTTACCTCATGGATACTGGTGGTTATGTGGGGACGCTCAGGCACGGAAAGCATTACCTTTAAATTGGACAGGGACTTGCACTACAGGATACTTAATAGCCCAGACCACGGTGCATGAGGAGATCCCTCGGGGACTCCTGAGGACCCCTNGGATTCGAACTAAGCGTACATACAACCCCCTAGCTATATATAACAAGGGATACCACNGCTTTCTGAGAGCCCTTATCCCGGCTCTAGGAGTTGCCCAGCTAGAAAAAGCTATAGTAAATATCTCTGCAACTCTGGAAATCGTAGAGAATGCCACAACAGATGCATTACGAGCAATCCAAGAAGAGGTATCCTCTTTATCCAAAGTAGTACTCCAGAATAGGATGGCACTAGACCTATTAACAGCCAAGGAAGGAGGGGTATGCACAATAATAAATCAGAGTCGCTGTGCTTACATCAATAAGGATTTAAGAATCGAGAGAGATTTAAGGAAAATTTGGGAACAGACGAAAGTCCTGCATAGGACAAGTCAGGATGACACCAGCTGGGAAGGAGATTTANGGAACTTGCTTACTAGCTGGCTACCGAATCTAGGATGGTTAAAGCAGCTCTTCCTAGTTTGCATCATCTTGGTACTGTTGGTAGGTTTTACCTGTGTGATGATAAAGTGCTCTGCCTGCCTGTGCCGAAATACNAGAAAGGAATATGAGATATGGAAGAAACACGAGCTAAGGCAGAAGGTGGAAAGTGGGAGCTATTTTGGGACATNTAGAACAGAATGGGATNATCTAGCAGGTAGAGGTCCTGCTAGACTTATAGAAAAGGGGGGAAT
>GGLTR7A#LTR/ERV1 GG000005   4% subst @cut  @general @gallus
TGAAGAGTGAGAACAGGACCCTGCAGTTATAGAGAGAAGGGCCTCACAGCAAGAAAAGGGAAAGTAGCTTCACAAAGTAGAAATAAGGGGCAAATAGAGATAGTTTAGGTAGAGAGTGTTAGAAAACAAGGGATTCCAAGCACTTTCACAGACACTAGGTCTGGAATAACAAGGAGGATGAAGGCCATAAAGATAAGGACTGGAGAGCAGCTCGAAAACATTTGGCAGGGAGGTGATTAGATGTCTACAGGGCAAGCTGAAACCGGTTCGGGGGATGCCCCCCCTTCGGGGTCAGAAGTTTGCAGCGAGGAAGACTACGAGCCTTCGCGAGGAAGACTACGAGCCTTCATCATCACGACCTACTACGCACGCGCAAGGGGGGGAGGGACTGCATGCTAATGGGCTCTCGGGAATGTAATGAATATGTATCCGAATTCCTGTCAACTATTGATTATGTATTAGTTCGACCTATATCTATAGCACGATTTCTCCTGACGGTGTGCAAGTTAGGTGGAGCGATCCCCCTTGCACCAGGGTGTACGCGCGTCACCAATAAACACATGCCTGCTCTATATCCTTACTGGCTATAGGGTCTGATTTCCGCACGTCA
>GGLTR7B#LTR/ERV1  GG000033 4% subst  ca 80% similar to GGLTR7B @cut  @general @gallus
TGAAGAGTAAGAAAGGGTTCAGTAAAAAAGGGGTCTGCAGAAACTAAGGGTAAAAGGATTAGAAATAGCTTACAGAAGCAAATATGCAGAGGCCGCTAGAAGAATGGGATAGTAACAAGATGGGATTAGGACAATGCGGGGGTAGAAGAGATAAAGATGAGGGTGTGAAAACAGCTCAAGGACACCAGGCAAGGAGGTGATAAGGTGTCCCCAGAGTAAGTTAGAACTGGTTCGGGGGCTACCCCTCCCTCAGGGTCAGAAGTTTACAGCGAGGAAGACTACGAGCCTTCGCGAGGAAGACTACGGGCCTTCATCCAACGACCACCAGGAGGAGACCCCCACTGCTCATGACGCATGCGCGAGGGGGAGGGACCGTATGCTAAGGAGTTCTCGGAAATGTAATGAATATGTATACGAATTCCGGGAAAATCATTGATTATGTATTAGCTCTGCCTATATCTATACCAAGTTTTTGTCCTGATGGCATGCAAGTTAGGAGGAGCTATCCCCCTTGCATCCGGCTCTGCGCAGCGTTGATTAAAACATACCTGATTTTATAACTACTTTGTGGTTATAGAGTTTGATTCCGCAAGTCA
>GGLTR11-int#LTR/ERV1  GG000673, GG000475-7, GG000364, GG000095 part 8-10% subst Contains damaged, partial coding regions (bp 1452-2804; closest to the human HERVP71A pol polypeptide)) and a partial ENS coding region (see ENS element in database; 53% dentical product (68% similarity)) @erv @gallus
GTTTGGTGCCGAAACCCGGGAACAACGTCGCCTGCGGTGAGCCTCCGCCTCTACAGCACAGGACGGTGCACCCCGCTCNTNTTTCTGCAGCCCTGTGGGTTGGCGGTGGTGGTTCATCGTGGAGCCGGCTGCGGACCCGAGGATGTTTTTAAGAGGCAAGATCTGTGAACAGCTGGGGGATAGGGACGGACAGCGGGCACTGCGGTGTTGTGTGATTGACCTGATAATTCCTGGCAACTCTGTGCACAGACCAAGGTAAGAACAATCATGTGTGATTAAGTACTGCCTTGGAGGTCGAGGTCTGGGACTCTTATGCTGTACGCGAACGTCTTGCAAAAAGGGTTGCTTGACGGTACACCTCATTTTCTAGAACCGAGAATTGGTGTGCGCGACGCTGCAGAAGAGCAGTTCCTGCAGTAGCACGACCATAGGTTGCTGAGAGAAATGGGGAATAAGAGTTCCAAGGTGGGGGACAGAGAGAGGGCCCCCGGGGCAGTGCCTGCTATAAGTCCTTTAGGAAGTATGATGAAAAATTGGAAGAGAAATTCGAGAACCAGGGATAAGGATAAACAGAAAATGATTAGATATTGTGTTGTTGTATGGCCTGAATAACCAATTGCAGGGGAATCAGTATTTTGGCCAAAATACGCGTCTGACGAGGATCGCATTTGTCAGGCTTCAAACGTGCACGTAAACAGTAAAACTCCTTTATTTATTATTTTNTTGTTTTGTTTTGGAGGAGGAGTCCGCATATGCTGCTTGTTGGATTCAGGGAGTACAGCAGTTAATCATGGCTAGACAAAATTCTGTAGATAAGGAAGAACAGAGAAACCCCAGATGGGATCCTTTAAGCTGTTTACTCCCTGTACCTTTCCCTAGGATTAAACTCACTCGCTTTCCTCTATGGAATGGCGTTCCCCCCCCTTACCATCCTGGCCTCGAGTCAAGTCCTGTAACTACAGGAGGGAGGCTGGAGACAGCTGACAGAGTGGAGGGTATTGGCTCGGATCAGCCCCTTAACAGCCCACCTGAACCGAGCTCTGTGACTAGTGCTGATGCTGAAAAGAAAAAGTTCTGCCAGCTTGAGAAAGAATTGGAACAATGCAAAAGGGATATTATAAATTCTCCCTTTCCTAAATCTAACNCCATTAACCCCACTAACACTTCCATGTATCCTCTTAGGGAAGTTCCAATGTTATCAGGAGATATAGGATATGTAAACTCCCCACTTACTAGTGGAGAGGTGAGAAATTTTAAAAGGGAAATGAAATCNTTAATGAAAGATCCTATTGGATTAGCAGAACAGTTTGATCAATTCTTGGTCATCTTTAGCTTATAAAATACTGGGACTTAATTTAACTGGGAACACCTTAAGAATAACAGGGGTAGAGGGATCAGGAATGATAGTTTCACTTTTTGAGACTACTGAATTAAAATGGGAAGATAAAATAGTCACAGGGCAATTGTTATATGTGCCAGAAGCAGGGACCAATTCACTGGGGAGAGATTTAATAGTTAAATTAGGATTGCAGTTGAAAACTTGTGAAACAGGTATAAAGGTGTCAATGAATTTGTTAACAGCTGATGATGAAAAAGAAATAAATCCAAAGGTGTGGGCAGGGGAAGGAAACCGGGGTGGACTCACAATTACTCCCTTAAAAATAACTGTCCAAGGAGGGAGTGAAGCTGTGAAACAGCGACAATATCCCATACCTTTAGAAAGGATAATGGGTCTAAAGCCTGTAATACAAACATTGGTTAAGGATGGTCTTCTGGAACTCTGTATGTCACCCTATAACACTCCAATTTTGCCAGTACAGAAGGCAGATGGCACCTATNGGCTGGTGCAAGATCTAAGAAAAATTAATGAAATAGTTCTCAAGCGACACCCCCTGGTTCCTAACCCCTATACTTTAATGAGTCNGATCCCACANGAACATAAATGGTTTAGTGTAATAGACTTAAAAGATGCTTTCTGGACCTGCCCTTTGGACTCAGAGAGTCGAGATCTTTTTGCCTTTGAATGGGAGGACCCAGAAACGGGACGAAAGTAGCAATATAGGTGGATTGTTTTACCCCAAGGGTTCACGGAATCACCTAATTTATTTGGACAAGTGCTGGAGAAAGTTTTGGAAAAGTTTCAGGTTGAAGAGGGGGTAAAGCTGTTACAGTATGTGGATGATTTGCTGATTTGTGGAACAGAGGAGTCTAAAGTAAAAGAGACTACAAGTAAACTCCTGAATTTCTTGGGGAACACGGGCTAAGGGTGTCTAAAAATAAACTGCAGTATGTGGAAAAAGAAGTCAGATACCTTGGGCATGTGATTTCTGAGGGGAAACGGAGAATAAATTCTGAAAGAATTCAGGGNATTGTGCAGCTTCCTCTGCCCGGGACAAAGAGGGAGTTGCGAAAGTTTCTAGGTTTAATTGGATACTGTAGATTATGAATAGAAGCATATGCACAAAAAAAAAAAAAAGAGATTGTATCTCAAACTATCAGAGGGAGAACCCAACATATTAAAATGGACAAAAGAGGAAAAAGAATTAGTAGAAGTATTGAAACGGGACTTAATCACAGCACCTGTGTTAGAACTGCCTGCCTTAAAGAAACCATTTCACCTTTTTGTAACTGTCAGTGAAGGAGCTGCTTTAGGAGTTCTAACACAAGAATGGGGAGACAAAAGAAAACCTACTGCATACTTGTCTAAGCTATTAGACCCTGTATCTCGAGGNTGGCCCGAATGTGTCCAGGTGGTAGTAGCAACTGCCTTATTGGTAGAAGAGAGTACGTGTGTACCCTTCGGGGGTGTAAGGAGCAAATTGTTGAGTTGTTGATAATACGTTTCCCCCCCGCGAAGAGATTGCTCCACATTTTGAGGCATGATCGTTAACAAAAAAAAAAAAAAAAAAAGGAACGAGGGCAGGAATCCGCTCCTCGACCTCTTAGAAAAACACGGTGCCAAACCCTCCCCCGTGGAGATGGAGTGGGCACAGAATAATTGGTCCAACTTAGAGGGAGTCGCGGATCATATAAATTCCCTCCACAAGCAAACTCGTATGGGGGAGGGAAAGGGAAAATCAATCATTTGTGCAGTTCTAGGAGCTGCTCTTACTGCTGCCGTAGAGATCCGCAACGAACAGCACACGGCAGAAACCCAAATTATTCAGTCCTTGCAGGAATTGGTCACATACCTGCAGGACCAAGTAGAAGATCTTAGGGGACAGTCAGAAAAAGAAAAACATTCAAAAGTCCTCCTTCAGCAAGCCCTTAGAGAACAGTTGGTAAATGAGAGGGAGATTAATGCTAGTTCCCCAGGTAGTGACTTTTATCCAGGAGAAAGTCTGGAGGATGTGAGAGCCCAAAAAGACAAATCAGAAAACCTGGTGACCCTTCTCTGCCCTCCGATAGAAACTGGGCATGCATATGAAGAGAGCGAAGGTGGGTACTCTGATGTTAGTATCAAGGAGGTCCCCTATTCTGCTACCGAGCTGGCCAAATTAAAGAAAGATTTTGGTCACACCCCTAGGAAATCAGAGACAGAGTATGTGTGGAAAGTGCCACTAACAGGGGGAGANCAGATCCTGTTGATTGAAAAGGAATCAGAGGGTTACTGGGGACCTGGAATATTTTTCACCACTGGCAACCACTGTGCCCCGTGGTCCCTTACTCAAAGAGCTGCTTATTGGGATGATTACTCCCCGGGACAACTGATGTTGATTGATTTGCCCCACATTGGTCCTGTCCCTTTAACCCTCAAAGAGCCTCTTAACAAATACATCTGGAAGGCTCAAGACGATCAGGGGAAAATGTACAAAATTAACCATCTGGATTTCACCTACCTTCTAACTTTGGTTCATTTGGGACCAGGAAAGTTTTTTTTGTTTTGTTTTGTTTTCTTTTCCAGTTATGCTTTCTCTAACCTTGGTTCCTCTGGAACCGGGAAGTTCTCTCTCTTTTGTTTTCCAGATGCTAACGAATGCTGATCCTGTTGCTGTGCCTCACATGTTCCCTTCTCACCCTGCTCCTTTCCCTGGGATCCCTGTGGTATCATTAATGTCACTGTTTCGGACAGGCATCTTCTTCAGATTAATATTTGCAATTGCTTATGCTGACCCTATCACATTCACTGGCTGGTCACGGTCCCATGCCCATATTGGGCATACTGGGCGTATGGGACCGAATTCTAATTCTAACAGAGGCTTAACCCTTTCAACCACGGTTAAGCACAGTAATGAAATATATTCAGGAAATGAATGGGGCCAGGATAGTACTGGCCGACTCCCCCAACTCCNGGGAGATGCAGGACGAAGAATAAAAGTAGGGTGTCGGATGCAACAAGTGATCTATGTGCATTGCAACACCCCTGCAGTCTTCCCTATCAGCACTGGGAACCAACCAGCGGTTCTTATCTAATGTATTATCTCAATGGGAAAGAACTAATATAAAAGACCACCAGTTAATTGTAGATGCACTTGCCATAACTCAAAATAATGTCTCCCTAGCTCTTAGTTGTAGAAGGTAAAGGAAACGCTTTACCCACTGAAATTCGAAAGGTGATTTGGGACAATGCAAACAAATTTGAAAGAGAATTTCAATCTTAGTGGCATCTAGTTAATTTTACTTATGATCCTGTTAATAACTNTGCTACAGCTTTTGTCCTAACAATACGCAATGCTTCGGTATATACCATATACCCAATCATTGCGCTGGGACTGAATCACAATGGGGTTATACTCTACCCATTAGAANACAGAGTATGGGCCCAACAAAATGGAAACAAATGGCAAACTGTTGATGTTAGTTCATGTGCTGTATGGGAACAACAAGGATTTATTTTTGTGAGAGTAATACCATCAAGGCTCAAGACATTTGTCTTGACACTGAGCAAAGTATTTGCCGTTTTNAGAGGTATCCCAATGAGACCCCTGAAATAGTGCTCATCTATATTGGAAAAGGATGTGTGTGTATGAGAACCTCTTGTAACTTTATACTCATAGGTAATATTACTGTAGATACAAGCAATCATTCAAATGTCTGTGTTTGTAACTTTACTAACATTATGGGATGTGACTTTAATTATTCAGTTCCAGTTACGTCATATCAGTTGTTGTGGTCCAATTACACATTAATCCAAGATTTGCCACCTGCCCCAATTGGAATGAATCTTGCTTTAGTAAAGAAATTACTGCAACATGACGATCTGTACCAACTGCTAGAACGCATCCGAGATAACGGACAAAAAAACCTCTAATTACTGTTCACCATGATACAAAAGAGATGCACCATGTCCTGGAAAGGGTGAAGAAGGATGGAGAACACCACTGGTGGGAAACGCTCCTTGGATGGTCACCAACAGCAAGAGGAGTTTTTAATTCTGTGCTTCACCCAGTTGTGATCTTATTAATCCTAACATTGATGTGTTTATTGCTTGTAATCATATTATATGTGAAAGTCTGGCAGATGCTGAGGTGACTGGCCCGGCTCGAATTACCCAAGGAGTCTGAAAGTTGGCCTAGGTATTAGATTACTTTTCCTAGCCTCCTGGTGATCCATGGGTAAGGCGAGTTCTGTTATGCGCATTGGCGGCACTCACGTTTTGCTCCTTTGCTTTTATGTGATTTTAACATGTATCTTTCCCTTCTCCCCTCATTCCCCTCAATGCTTTTTTTTCTTAAAACCACCATGGGACAGTGATAACAAGCTTTGCACCGCCGGGTGGTGTGAGAAGCAGNAACAATGCTTGGCTCAAAGCTTGTTCAGCGGCACCCATCCGAGGCATGAGAAGCTGGAGAATGCTTGGCTCAAAGCCTGTTCAACGGCACCCATCCAAGGCATGACCTGCCCAACAAGTTTTTGAAGTTAATGGTTGACTACCATGAGCACAGTGGTAAGAGGACAGACGTGCTGTTCCTCCTGATGAACAAAAATGTGGGTACCCCGACAGCTACCATCACCGTGATGGACAGGACATGATGCCCCTGATAATTGGGGTAGTCGGGCCCGAAGAGTTCTGAGGAAGAACGGGTACCCCATCTGCCAAAATGCAGCCATGTAAGTCAACGAGACGTCGCTGACCAACCTGCTGCCTCCCCATGGACCAACGAGACATCGCCGGATTCCCTGGTGGTGACTATCCCTGCTCTGTAAACCGTTTGCTAGAATTTCTTTCTTTACTATCGCTAACTTCCCCATCTTCCCCACATCCCTTAGTAGCTTAGAACCTGTAATGCTGATTATGCTCTGATTCAAGACTTACTACCTGTTCATACTGGGATGAATCATACAAGGGTGAAGAAATTGTTATTCTTAATCAATATATATATATTAGAGTATGGAGAATAGCAAGATGATAAATTATTATTATCAATCATCAAGTCGGGTTAGTAAGGTAGTTTTCTTATATTAGAAGTGTTTCATAGTCTGGTGCAAAAACACAAAAAGGGTAAAAAGAAAAAGAGGGGGAATTGTGAGAGGTAGATTG
>GGLTR11#LTR/ERV1  GG000095, partial. 8-10% subst @cut @general @gallus
TGTGAGAGGTAGATTGTGTTTTTGCAGTGGAAATTTCCAGTATTTCTGTATGTAGCATAGGATAAGTTGCCTTTCACAAAGAAAGCTCCTGAACAGAGTAAAGTTGAGACTGGGGCGTTCCGACCTAGGTAGAATTGGCACAGGCACTAGGTAAGGTAATTATATAGGGTAGGGGAGAGTCCGGTACAGGACAGAACGAGTGTGCTAATTGTTGAAAATATTGTCCTCCTATCGCCGTAAAAAGTACAGAACATACCCAAAGACAATGGGTTGGTAACAGACATTGTATGGAAGTGTAACGTAGCAACAGCGTCGGAAGACTGTGAGCCTGAGACGCTCAACCAGTGAGTGCCAGGAGAGGCTTTACCTGCGTCGGACCCAGGGTATATAACGGAATGGATTTCACTGACTAGTTGCGCAATTTCTCCCTTGTCAGTAGGGGGTGTGCGCCCATTATTGCAATAATGAATAAACTGCTCTTCACAGAGATCTTTGCCTGATTAGAAATTTTTGATCTTGAGCGTGTTTCTCACA
>EAVHP_I#LTR/ERVK flanked by GGLTR10A elements @erv @gallus
TGGTGACCCCGACGTGATCTGTCTGCTGAGGGTAGCTGCCCGGCATGCCCGTGACGTGGAGAAGAGCCTGTGAGGTGGCGGCAGGTCGCGCACGGAAGACGTATTGCGGTTAAGAGCCTGCGAGGTGGCGGCAGGTCGCATACGTAACAATGGACCAAGTCATTAAGGTACTTGTGCAGTTTTGTAAGGACTACTGTGGAAAATCTACTCCTTCCCGGAAGGAGATCGCGACAGTTTTGTCGCTGTTAAATGAGCTGGGGGAGCTGGACTCTCCCCGCCACGTTTTGGATTCGAGTAGGTGGGACTTGCTCACCTTGGCGCTATGCCAGCGCGCCATGGCCAGTCAGAAGGCTACGGAACTTAAAACGTGGGGACTGATGTTAGGAGCCCTTAAGGCGGCCAGGGCAGAGCACAAACTTGGCGCGGTCATGAGCGGGGAGGGAGCTCCGGGGAGCGGATCTCTGGAGTTTTGCAGGACCGGCGCTCAGACCGGCGCTCAGACGACAGCGAATAAAACGGCGACGGAGAGAGAGGAAGATTGCGAGAAGGACAACGAAGAGTCGCAGAGGCTCGGGGGGGGTGCAACGACGCCGACGGCCCCTCCTAATTCTATTGCGCTGTCGCCGCCCCCGCCCTACCCTAAGCAGCCGTTATATCCTTCCTTGGCAACGACATCGGAGCAGGGGGCGGGACCATCCCCAAAAGGGAAGGGGGAGGGGAGACTTAAGCTTACTGATTGGGGGCAGATCAAAGAGGAAGTGGCACAGAAAGGCCTGGCGGCAACTTATACACTCCCAGTTGTTGTCTCGGAGGAGGGAGGCCCAATCTGGGTCCCGTTGGACCCAAAGGGGGTAGCAAGGATGATTGAGGCAGTAGAAAAGAAAGGGCTGAAGTCGCCATTGACGATGAATGCCCTTGAGGCCCTCACAGCATCGGGCCCAATGCTGCCTTATGATATTGAAAATTTAATGCGCATGGTGTTGAAACCAGTGCAGTATACGCTCTGGAGAGAGGAGTGGCATACCAAATTAAAACAAATGCTGATTACGGCGCAGGGTGATCAAAGAAACCCCATATATGGGTCTGATATACAGAGATTAACGGGCAATGCACCAGGTCTGCTGACCCCTCAAGCACAAGTTTGTCAACTTAGACCAGGAGAGTTGATAGCGACTACGGACGCTGCAATAGACGCGTTCCGAAAGCTTGCAAGGAGCGCTGAGCCCACTACTCCGTGGACAGAGATCGCGCAAGGCCCCACAGAGCCGTTTCAGGAGTTTGCAGACAGACTAATTAAGGCAGTGGAAGGCTCGGATCTGCCCAGAGCAGTTCACGGTCCCGTCATCCTGGATTGCTTGTATCAGAAGTCCAGTGAAGGGGTGCAGGGGATTTTGCGAGCGGCGCCGGGGAGGCTCCAAACCCCTGGTGAGGCCATCAAGTATGTCCTAGATAAGCAAAAGGCCTGTCCGTCTGTGGCAGGGGAGGTAGCTGCGGCGGTAGCAGGAGTGATGATGGCCTGTAGGGAGGCGGACCATCGTAGTGCGGACCGACAGTTAGGACCTTGCTTTAAATGTGGCCAGTTGGGCCATATTAGGGCCCAATGCAGAATGGGCACGGGTGGAGGTGTAACATGTCAGCAGTGTGGGCGGAAGGGTCATGCAGCACCGCAATGCAGGGCCCGTAGGCCTCCAAGCCAGGGAAATAACAACGGGAGACAGTCCGAGCACGGTGACATCATTTTTCGACCTATGCAGGCCCCTGACCTAAGTTTACCCATGGCGGCGCTGTCTCTAAGTACCCATGAGCGCCCTCTGGTGAAAGCCACTATTTCTTGCACCAACCTCCCGCCGGATTTTCAAGGCCCTCTATCTATCTTTGTCACTGCCCTCATAGATTCCGGCGCCGACGTTACTGTGGTCACGGAAACAGAATGGCCATCCTCGTGGCCCGCGGAGGCCTCGCAGTCTATTATGGGGGTTGGAGGGGCGACCCCCTCACGCCGGTCTACCAATGAGGTACAAGCGGTTGTGATTAACAGGGATGGCTCCTTAGAGAAACCGGCGTTGCTTACGCCATTGGTGGCGCGTGTCCCCGGAACTCTTCTGGGGCGGGATTTCTTGCGACAGATAGGCATTCCACAGTATCCTCTGAACACCTTCAAGGGATACGTCACTAATGTTACTGCTTGCGATAACGATGCCGATTTAGCCAGCCAAACAGCATGCTTGATAAAGGCTCTAAATACAACCCTCCCTTGGGACCCCCAAGAATTGGATATTTTAGGGTCCCAGATGATCAAGAACGGAACAACACGTACGTGTGTTACCTTTGGTTCAGTGTGCTATAAAGAGAACAATCGCAGTATAGTCTGTCACAATTTTGATGGGAATTTTAATGGGACTGGTGGGGCGGAAGCAGAATTGCGTGACTTCATAGCAAAATGGAAAAGTGATGACCTTCTTATAAGGCCCTATGTCAACCAATCATGGACGATGGTAAGTCCAATAAACGTAGAGAGTTTTTCAATAAGTCGTAGATATTGTGGATTCACCAGTAACGAGACTCGTTACTATAGAGGGGACCTTTCTAATTGGTGTGGTTCAAAAAGGGGAAAATGGTCAGCGGGGTACAGCAACGGGACAAAATGTTCCAGCAACACGACGGGTTGCGGTGGTAATTGCACAACGGAATGGAATTATTATGCATATGGGTTTACCTTCGGGAAACAGCCAGAGGTGTTGTGGAACAATGGGACTGCTAAGGCACTCCCACCAGGTATTTTCTTGATTTGTGGGGACAGGGCTTGGCAAGGCATCCCGCGTAATGCCTTGGGAGGGCCCTGTTATCTAGGACAATTGACTATGCTCTCTCCTAACTTTACCACCTGGATAGCGTATGGGCCGAACATTACGGGTCACCGCCGTAGCAGGCGCTCGCTGAGTCGTCTCTCGCCTGACTGCGGTGATGAGCTACAGCTATGGAGTGTGACAGCCCGGATATTTGCTTCTTTCTTTGCTCCTGGTATAGCAGCAGCACAGGCCTTAAAGGAGATCGAACGATTGGCATGTTGGTCGGTTAAGCAAGCGAATTTAACATCATTAATATTGAATGCGATGCTGGAGGACACGAGCAGCATCCGGCACGCAGTGTTGCAGAATCGAGCAGCCATCGATTTCTTACTCCTGGCGCAGGGACACGGGTGTCAAGACGTGGAAGGGATGTGTTGCTTCAATCTCAGCGATCACAGTGAGTCCATTCACAAGGCGCTCCAAGCCATGAAGGAACATACAGAGAAGATACGGGTGGAAGATGATCCCATAGGGGACTGGTTTACGCGCACGTTTGGTGATCTAGGAAGGTGGCTCGCGAAAGGTGTTAAGACGCTACTGTTTGCCTTGCTTGTCATAGCCTGTCTATTAGCTATCATTCCATGTTTAATCAAGTGCTTTCAGGATTGTCTATTGAGAACAATGAATCAGTTTATGGATGAACGCATAAAATATCATAGAATTAGGGAGCAGCTGTAGGTTCCGAACGCGATGTGACGGGAGCTATCGGCATAGGGAGGGGGA
>GGERVK1#LTR/ERVK GG000290, GG000778, GG000829, GG000550, GG000264   (with GGLTR1 LTRs) ORFs 248-2116, 2445-5039, 5124-6803 with best matches to EAVHP and HERVK. The region from 5260-6440 is only present in a subset of the elements (and subfamilies with different deletions exist)  @erv @gallus
AGTGGTGACCCCGACGTGATGCTTAGGGGAATGAGTCGGCTGTCTGCTTGACGGGGCAGGAGCCCACCGCGGAGCGTTAGCACTTGCTGGGCGGTGGAAGCCGGGGGACGAGCCCGGGGACAGAGGGAATCTGCAGTCACCCCTCTGTCGGCGGAGGTCGCGGACGAGCGACGGATATACCCTCCGGAATCACGCCGGAGAAGAGCCTGGGATCCTGGTCTCAATCGGGAGGAGGATCGGGGGCGTCATGGAAGCCGTCATAAAGGTGATCGTTCACGCGTGTAAGATTTATAACGGGAAGCATGCTCCTTCTCAGAAGGAGATAGCTGCGGTCCTCTCGTTGCTTGAGAGGGAGGGGCTGTTAACATCGCCCCACGAGATTTATGACCACAGTAATTGGGATTCAATTACCGCTGCCTTATCCCAACGAGCAATGGTCACTCAAAAAGCAGCGGAATTTAAAACTTGGGGTTTGATTCTGGGAGGATTGAAGGCTGCGCGCGAGGAGAAACTTGCGGGCGAACGAGCCAGGGAGCTATTGGGGTTAGAGGTTGCGGGGCCGGGAGTGGGTCTCATTCCTCGTGCAGGTCCGGCTGGAGATAAGGTGGCGCCAGCCCCTACAACCCATCCTGCCGCGATAGCTCCGGGAACAAAGAAGGACGAAGTTGCATCGAATTGCTCAAGCGTGGAGGCCACAACACCCCCACCTCCGTATCCCTCTCAAGGCTTATATCCTTCACTGAAGTCAGTCGGGGAGGGGGGGGGAAGGTCCTTAGAGGAATGTGGTAACATCTCCTGCAGGGCTGATAAGCAGGCTTCGGGGGAGGGTACGGCATTCCGAGGAGGTACAGCNCAACCCGTGTGTTGTGATAACGAGTGCAGCTCAGTCTGTTGCTGTAGCAACTTCCCCAACGGGGCGGACTGCACCGTCCCGCCCCGCGGTGGATGCAGGGGCGGAGCCCCGTGGCCAACGTCCCAGGGGTCCACCCCTGAGGGGTGCGGCCCCACAGCACCCGCCCCGTGGGCTCCGCCCACGCTCACTGATTGGGCCCGGGTGAGGGAGGACTTACGAGCAGCCGACCCAGCACGGCCGCCGCTAGCCCTTCCGGTCATAGTCAAGACAGAGGGCCCGGCGTGGGTCCCTCTAGATTCTAAAGCAATAACCCGCCTTTCTGAAATTGTTAAAACAAAGGGGCTGCGTTCCCCAGTAACAATGGCGGCGGTAGAGGCCCTCATGGCCTCTAGCCTACTACCGTACGATGTGATCAGCCTCATGCATGTGATCCTTGAACCGGTTCAGTACACCCTGTGGTATGATGCTTGGAATACACAATTGCAAGCAGTGGTGGCGGCAGCCACCCGAGATGCCCGACACCCAGCCAATGGTCGGGGCCGAGGGGATAGGACCACATTAGCGCGTCTCCAGGGTGTAGCGGACGGCATGGTGGGATCTCCGGAAGGCCAGCTTAGGCTGTTGAGACCGGGAGAGTTAGCTGCAGTCACAACTGCGGCCCTACAGGCCCTTCGGGAGCTGGCTCGAGTTACAGAGCCTACTCTCCCGTGGGCGGATATCAAACAAGGCCCTTCAGAGCCTTTTGCNGAATTTGCGAACCGCTTGATTCGTGCAGTTGAGGGGTCCGATCTTCCGGAGCCGGCCCAAGGTCCTGTTATCATTGATTGCCTTAAGCAAAAATCGCTCCCGGACATACAGCAAATTATTAGGGCGGCCCCAGGCAACTTAACAACCCCTGGGGAACTTATCAAATATGTGCTTGACCATCAGCGCGCTACTCCGTTAACAAATGAGGGCTTAGCCGCAGCCCTCCAGCTCGCAGTACAGGCAGCTACACGCCCCAAGGACGGGGGAGGGAAAGGTGTCTGTTNTAAGTGCGGACAACCCGGACACTTTAGGACCAACTGTCCGAATAAAGGTGGCTCAAAAACAGACACAGACAAAAAATGCCAGTGGTGTGGTGGGGCGGGCCACACGGCGCGTAACTGCAGGAAGATCAAGGAAGCGATGCAGGGAAACGGCCAAGGGAGGGCGCCTCGGGCCCAGGGCACCTTCCCAAATCAGAGCAATGGGCCAAGGAGAACATGCCCACCGTGGCATTAGCCATGGGATTGGGGGACCGTCCACTAGTTAAGGTGATAATGTCATATGCGGGTCCGCGGCCCCAAAAAGAGGGACCTCGAACCACGCTTTTTACGGCTTTGCTAGATTCTGGTGCGGACGTTACAGTGATTGCGGAGGCCGATTGGCCGCCGAACTGGCCACTCACCTCGCATTGGCAGCATATTGGGGGAGTGGGAGGCACAGTCCCAACAAAAGGGGCTGCAGAGGAAGTGGAGATCGCTATCATTGATAGGAGCGGGACGATGGAGGCACCGGTGTTGATGCAACCCCTCGTGGCACCGGTGGAAGGATCAATCTTAGGGCGTGATTTTCTCACGTCCTTGGGAGTTCGACTCACAAATTTATACTAAGGGCCACTGTGTACCACCTTGCGCTGCATTTTGCCATCCCATTACGCTGGAAACGGGAAGCGTCTCCCGTTTGGGTGGATCAGTGGCCCCTTCCTACTGATAAATTAGCAGCGCTGACGCAGCTGGTCTCCAGGGAACTGGAGGCGGGACACATTGAACCGTCACTTAGTAGGTGGAACACGCCCATCTTTGTTATCCGGAAACCATCGGGGTCCTTCCGTTTATTGCATGATCTTCGGGCTGTTAATGCACAGCTCGTCCAGTTCGGTCCCGTTCAGCAAGGCGGTCCATCACTTGCAGCCGTTCCCAGGGGATGGCCCCTTGTGGTCATTGACCTTAAGGATTGTTTTTTCTCCATCCCTTTGGCAGAACAGGACCGGGAGGCTTTTGCATTCACAGTCCCTGTACGGAATAACCAGGGCCCAGCTCAAAGGTTTCAATGGAAGGTTCTCCCTCAGGGAATGGCCTGTTCACCTACTATTTGTCAGCTTGTGGTGAATACAATTATCGCGCCAGTGAGACGCGACATGCCAGACTGCCAGATTGTCCATTACATGGATGATCTTCTGCTTGCAGCTCCGACAGGTTCCCAACTACAAGCCCTAGAAGCACGGGTGTCAGGCGCGCTCACGGGTGCAGGTTTCACGATCTCCCAAGAAAAGGTACAACGAGGGCCGGGGATAGAATTCCTAGGATATAAGTTTGGATCATCCACAGTTATCCCCGAGGGCCTGGAGATTAAGCCTCACGTAACCAACNTGTGGGATGTTCAGAAATTGGTAGGAGCTATCCAGTGGGTCCGGGGAGCGCTGGGTATTCCACCACGATTAATGAAGCCCTTTTATGACCAGCTGAAGGGCTCAGACCCACGGGAAAGGAGAGAGTGGACCCCAGAGATGGACGCTGCCTGGCGAGAAATACTATCACTGTGCTCAACAGCAAGTTTGTCCAGGTGGACACCGGGTATCCCCCTAGAGGGCGCTGTTACTCGCTGCCAGGATGGGGCCGTAGCTGTCATTGGTCATGCACTGGGCTCCTGTCCACAACCTCTGCGCTGGCTGTTCTCAGCACAGCCGGTGCGGGCATTTACCCCGTGGGTGGAGCTTCTCTCCCTGCTACTTAGTAAGGCAAGGACANCTGCATTTAGGGATTTTGGAAAGGATTTGGATATAGTCCACCTGCCCAGGTTCTTCCGAGATTCGCAGATCTTGCCTGACGAAATCCTCCTGGCCCTGCATGGGTTCGGAGGCAAGCTTAGGTATGCGGGTTCCCTTCCGATTTTCGAGCTGGCACGCCCGCTCCGGGTGTCACTCCGTCTTCGGGTTGTTGCTTCTCCCCTTGATGGTCCGACAGTATTTACGGATGCCTCTTCATCGACAGGTCAGGGGGCGGTTGTCTGGAAGAACCAGACGGGTGACTGGGAAATTAGAACATTTCAAGATCACGGTGTCAGTGTTCAGACGCTTGAGGCGCAGGCGGTAGCGATGGCACTGCTCCTCTGGCCAGACACCCCTTGCAATGTAGTCACTGACTCTGCTTTCATTGCAAAAATGTTACTACGAATGGGGCAGGAAGGACAACCCAGTACTTCGATTGCCTTCCTCTTGGAGGAAGCATTGACGGCAAGGACAGCGCCCGCTGCTGTTCTTCATGTGCGAAGTCATTCAGACGTTCCGGGATTCTTTACAACTGGCAATGCCCTCGCTGACCAACACGCGGGGCACAAGGTTCTTACGGTGAGGGAGGCTAGAGACCTGCATTCTACGCTACACCTAGGGGCTCGAGCACTGTCAAGGACATGTTCNATTCCTATGGCGGTGGCCCGGGAGGTGGTGCAGGCATGCCCTCACTGTAATTCAGCCCCTGCGCTTAGTGCGGGAGTGAACCCTAGGGGAATTGCACCTCTCGACGTCTGGCAGACGGACTTCACGCTGGAGCCTCGTCTGGCGCCGAGGTCTTGGCTTGCGGTTACTGTTGATACCGCGTCCACTGTCATTGTTGCTACCCAACATGGCCGCGCGAATTCTTCTGCAGCACAACATCACTGGTCGGTGTGCGTCGCGACATTAGGCCTACCGAGTCACATTAAGACAGACAATGGCTCCTGCTTCATCTCGCGCTCCACCAAGGAGTGGCTAGCGCGTTGGGGCATCACGCATAGTACNGGTATCCCTGGCAACTCGCAGGGCCAGGCTATTGTTGAAAGAGCGAATCGGCTCCTCAAGGAAAAGTTGCGTGTCCTTGGGGAGGGGGAAAATTACAGGGGAAAGATTCCAGTGAGCCAACAGGGAGAGTTGCTGGCTCGTGCGTTGTATGCATTAAACCATTTTGAACGGGGGGAGAATCACCGCACCCCTATGCAAAAGCACTGGCAACCGAGGATTATTGAAGAAGGACCACCGGTGAAGATTAAGATCGACAATGGGTTATGGGAATCAGGGTGGTCTATTTTAGTTTGGGGCAGAGGCTACGCGGCGGTCAAAAACAAAGAGTCGGGAAACATTATATGGGTTCCATCGAGGAAAGTTAAGCCAGAGTTTGGCCTCAAGTAACGAGAACTGAGCGTTTCTGTTGCAGGCGTGGCTACTGGGGAAGCCGAAGACCCCGACACCGGAGAAGCGGAAAAAAACACTTATATGGGTGCGTGGACCACCGAAGACAAGCCAGGACACGGACCCGGCAACACAGCCGTTACTGCCCACACCGAGAAATTTGGTTCTACCTCTGCTAATGTGTCTGTGTCTATGTTCTTTGCCAGGGGGTGGCGCGGCTATTTGTTGCAGCAGCCGGGGAATGTTTGGGTTACATGGGCGAACCAAACAGAGCGGTTAGCTTGCTGCCTTAGCTTACAGTCAGCTACCTCGCCCTTTCGGACATGCTTGATAGGGGTTCCCTTCTGGGTGGGGAACAGTGATCCACCTGAGTTCCTAGGATACCTGCGGGCGTATAACATCTCCAACCGCTCCGACCCATGCCATATTTACTGCGGGAGCCCTCAGCTTAATGACACTGACCTGGCAAATGAAACGNTTGACANTGTAGGGAAGAAAGTAGCTTGTGTCATCTGCAGGTTGAATGTCTCCCTCCCTTGGGAACCCCAGGAGCTACAGTTGTTGGGGTCGCAGGGAGTGCCTAATGACACTTGGGTGAATACAACTTGGTTATCTCCTGGCTGTATAGGATTTGCAAGGGTCCCAAACCAGAACTACAGCCTTCTTGATTCCATCTCCCGAAAGGGCCCGTACTGGAATAGCCGTATTAATCGCTCTGATCCATTTACTGATGTGTTTCCGAGGGATAGGGCCCACTATTACTGGGGAAAAGAGTATTGCGGTTACACAGCAAACAAAACCACATTCATGCTATCTAACAACAGCTGCACGGGTATCTGGATTTCGGTAAACACAACTGTCACCATAGCACGGCCCGACGGCTTTCTTAGGAATTTGACCTGCAGCAGTTATAATGTTGGCGACAGTAATACCAGTGGTTGTTGTGTTGGGCCAGCTCTCAGAGGTCAGGGCGAAGAAAGGAACATCTGGAATAATGACACAGCTAAAGCGCTGCCGTCAGGTATTTTCCTTATTTGCGGAGATCGCGCCTGGCAGGGAATTCCAGTTAAACCGGTGGGGGGTCCATGTTACTTGGGACATTTAACTGTCCTTTCCCCAAAGGTTTCAGAATGGCTTCAGATAATGAATCGTACTCGAATGCGAACTAAACGAGACTTGCAGCAGTTATCGCCTAATTGTAGTGATGAAGTTCGTCTTTGGGGAATGACTGCGAGAGTTTTTGCATCACTATTCCCGCCCGTAGGTGCAGCACAAGCGCTGAAGGAAACAGAGCGGTTAGCTTGCTGGTCGGTCAAACAGGCCAACGCTACTACCCTTGTGCTGAATGAAATGCTTGAGGATATGAATAGTATCCGACATGCGTTGCTGCAAAACCGGGCGGCTATTGACTTCTTGCTTTTAGCTCAAAGCCACGGATGTGAGGATGTCGAAGGGTTCTGTTGCTTCAACTTAAGTGATCACAGCGCATCGATCCATAAACAACTACAGTGGATGCAAGGCCACACACAGAAGATCAAGGTGCAGGCCGATCCCTTCGGTGAATGGTTGGAGGGTCTGTTTGGGGAATTAGAGCCGTGGCTAAAACAAATGCTTAAAACGCTTATCGTAGGTTTAGCAATATTCTTGGCTATTATGCTCTGTCTTCCATGCTTTGTTCAGCTTCTTAGGGCATGCTTAAGAAACTTCATAGAGGAAATCTCACGTCAGCAGTACGCGTATCAGCGCATTCAGGAGCAATTATAGACGCACTTAGGAATAGAAATAGAGTTAGGATTTGCGTTCGCGTTGTAACGGGTCAGCTTTCTGTGGCATGGGGAGGGGGAGA
>GGERVK10#LTR/ERVK GG000660 There are many subfamilies. Some wit large extra pieces, partially represented in GGLTR10-int ORFs 206-2212, 2424-5135, 5144-6799  @erv @gallus
AATGGTGCCCCGTGTGAGGCACGGGTGAGAGGCCTGTGTGAGGCACAGACTGTGTTCTGATGCTCTCTGCGCTGCTGCGAGCTGTGGGGTGACGCCATAGCACGAGATTTGGGGTGACGCCCAGCCCGAGTGCCCTGAAGAGAGGGGTAGCCTGCAGAAGACGATTGGGGTGACGCCCTGCAGAAGATCATGGCGACGACGATAGTGCTGGCCGGCAAGTGGAACCTGCGTTGCGGTGGGGTCCGGGGGGGACGACAGGACGCCCGCGGAGGACCCGTGTNGACGGCGGTGTCGANTGCGAATCCGNGGTGACGGCGACGGGCTGACTATGGAACATGTTCTTAAGGTACTGCTTCAGTTTTGTAAAGACTACTGCGGGAAGAATGCTCCTTCTAAGAAGGATATCCACGCAGTTATTTCCCGGTTAGAGCGGGAGGGGGAGATTAAAGCCCCCCAGGAGATCTTTGATCACCGGAGATGGGATGATCTCACCTCCGCACTCGCGCAACATATTATGAGCGCTCAGAAGGGTGGGTCGGAGCTAAAAACTTGGGGACTGATACTAGGGGCGCTGAAAGCTGCNAGGGAGGAGGGAAAGGTATNGGAGGANGCCCGGCGGCTCTGGGGTCTTGACCAGGCGGACCCCGGAGGGGGTTCGCAGGGGGTCAGCTCGGACGCGAAACGCGGGTGCCGGCCGGGAGTTAGCCTCTCTTGCAGGAATCCAGACGAGGAGCGATCGACAAAGATGGCGCCGGGTGATCCGANCACACCCGNACAAACGNCGGGGGACAAACAACAAGATGGCGGGCTCCAGCCGTCGGCACCCTTATCGGGTGAAGACACCTTATCGCAAGAACTGGAATCCCCGCCTCCGTATCCCCGGCAGCCGCTGTATCCTTCATTGCAAAACTTCACCCCGCCCATAGGGGCGGAGAAAGGGGTGGAGGAAAAAGGGGGCGGTACACCTGCTCCCTCNCAGGGGGCGGAGAGTAGGGATTACACCCCCCCGGAGGGGGCGGGGGGTAGGCGCGGTACTGACTGGCAGGGGATTAAGGANGCGGCAGAGGAAAAGGGCTTAGTCACCGCGTTCCCCGTAGTGATTGGGGAGGAGGGGCCGGAGTGGACTCCGTTAGACCCGAAAGGAGTCACACGCTTAATAGAGGCGGTAGAGAAGAAAGGATTGAGATCACCCCTGACTNTGAATGCGTTAGAAGCTCTNACAGAACCAGGCCCTATGCTCCCCTACGACATAGAGAACCTTATGCGTATGGTACTCAAGCCCGTACAGTACACACTCTGGAAAGAGGAATGGCTAACTGAGCTTAAACGGGTGGTAGCAGCCGCACAAGACGATCCAGGGCACCCTGTGCATGGCACAGATATGCTGAGGCTTACGGGATCTGCAGCGGGAATGGCCACCCCCCGTGCTCAACTNGCCCAGCTGCGCCCAGGGGAATTGTTAGCGACTACTGATGCGGCTATGGGAGCTTTCAGGAAGTTCGCCCGTAGCGCAGAGCCTTCCACTCCTTGGTCGGAGATAGCCCAGGGTCCAACCGAATCTTTTCAAGAGTTTGCTGATAGGCTAATTAAGGCGGTTGAGGGGTCGGACTTACCCAGAGCTGTCCATGGCCCTGTAATCGTGGACTGCCTCAAACAAAGGTCTCTTGAGGATGTCAAAACCCTGCTTCGTGCAGCTCCCGGGAAAATCTCCACACCGGGGGAGGTTATTAGGTATGTGTTGGATAAACAGAAANCTACCCCGCTGACTAATGAGGGCCTGGCGGCCGCTATCACTAACGCGATGGCTGTGGCNTCGAGGCCACCGCGAGCCGCAGAACCCTCCAGAGGCCCTTGCTTTCGGTGTGGCCAATTCGGCCACACTAAAGCCCAGTGCANTGCCCCAGTGGACGANGAGAGGGGTGGCCCTTGCTTCCGGTGTGGCCAGTTCGGCCACATTAAAGCCCAGTGCAGAGCCGCGAGGTACGGGGAGAGGGGTAGAGTTACATGCCAACTGTGCGGCAAGGGAGGGCATAATGCCCGGCAGTGTAGAAGCGTTAGAGTTCAGCCGCAGGGAAACGATTGGGGGAGGGTGCCTCAGGCCCAGGGCCCCTCCCGCAGCCCGCGGGATGGGCCGTCGATGATACCTATGCCCAGCCCGCCAGTCATGCNGGCTCCCANCTTGAAGTTCATGACACGCCCACCGTGGCATTAGCTTTAGACTGCCAAAACCGCCCGTTTGTTAAGGCGTTCATGTCGTATGTTGGCCTGCCGCCTGACTTTTCGGGTCGTCGNTCTGTCCCGGTCACAGCGCTTATTGACTCGGGGGCGGATGTCACGGTGATATCTGATGAGGACTGGCCTAAGGAGTGGCCTGTGGGGACCTCTCAGGTGATCAGAGGGGTGGGNGGGACCATATCTACTAGACGATCCTCGGCAGAGGTAGAGATTGTCGTAGTCAACAGGGACGGTTCGTTGGAGAGACCTGCCTTGCTTGTCCCGCTTATTGCCAGAGTACCAGGCNCACTACTGGGACGGGACTTCCTAAACAGTGTGGGTGCACGCATTACAAATTTNTAGTAAGGGCCACTGTCTGCCAGCTGTCCACTGCATACGCGATTCCATTGCGGTGGAAACGGGACGCGCGCCCCGTTTGGGTGGATCAGTGGCCTCTTCCCCTCGAGAAACTTAAAGCACTCAGGCANTTAATCTCACAGGAATTTCAATTGGGACATATCGAACCCTCTCTTAGTCAGTGGAACACCCCGATCTTTGTCATACAGAAGCGCTCCGGCGCCTTCCGCCTGCTGCACGACTTGCGCGCGGTCAATGCCCAGCTTGTACCTTTTGGGGCAGTGCAGCAGGGTGGACCGGTACTGTCAGCCATACCCAAGGAGTGGCCGTTGGTGGTCATAGATCTTAAAGACTGCTTTTTCTCCATCCCTCTCGCGGAAGAGGATCGGGAGGCATTCGCCTTTACGGTACCGACGCTCAATAACTTAGGCCCCGCTGAAAGATTTCAGTGGCGTGTCCTCCCGCAAGGAATGGCGTGCTCCCCTACTATTTGTCAGCTAGTGGTAGGTAGAGTATTGGAGCCAGTCAGGAGAGACTTCCCTCGATACATACTCGCGCATTATATGGATGATCTTTTGCTTGCCGCCCCTACTGAGTTAGGGTTACAAACGCTTGAGTCGCGGGTGATGTCTACTCTAACTGCCGCTGGGTTCACTATTTCAGAGCAAAAGATACAGAGAGGNCCGGGAGTCGAGTACCTGGGGTATAAGTTTGGCCCCGAGACGGTCCAGCCAGCGGGTCTTGCCATTCAACCGCGCGTTAAAACGCTGTGGGATGTGCAGAAACTGGTAGGAGCCCTCCAGTGGGTTCGGGGTGCATTGGGGATACCCCCTCGATTGATGAAGCCCTTTTATGATCAGCTGAAGGGGTCTGATCCGAAGGAACCCCGAGACCTGACTCATGAAATGGCCACGGCCTGGCAAGAGATCTTACAAAGCTGTATGGAACAGTCGCTCGCGCGATGGGATCCCACCGAGGCCCTTGAAGCAGCTGTTTGCAGGTGTGAGGCAGGAGCTGCCGCTGTTCTGGGCCACTCTCTCGACGCCAAACCGCAACCATTGTGGTGGCTGTTCTCAGTACAACCCACGCGCGCCTATNCCTCCTGGCTCGAGATATTGGCGATGTTACTCAGGAAAACCCGATTGCTCTCGGTGCGGGCTCTAGGGAGAGAACCTGACGTGATACACTTACAGAGTTCATTCCGTGATGTACAGCCGCTCCCTGAGACCCTNCTCACAGTGCTAAGAGATTTTGGAGGACTGATAAGGTACTCAGACTCCCTNCCCATTTTTGACGTGGCTAAGCCGCTTGCTGTCTCCTTGCGGGTGCGGGTTCAAACCTCTCCGCTTGAAGGGCCCACGTTATTCACAGACGCATCCTCGAGGACCGGTCAGGGGGCGGTGGTTTGGCAAGATTCAAGCAATAGTTGGCAGACTGCTATTTTCGCAGACCGAACAGTCAGCGTGCAGATGCTCGAGGTGACGGCCGTAGCCGTTGCGGTGCGCCTTTGGCGTGAGATACCTTGTAACATCGTTACGGACTCTGCTTTTGCNGCCAAACTACTAGCCCGGATGGGTCAGGAAGGCCTCCCGAGCACAGAAGCTGCTGGCATNCTGGAGGAGGCTTTAGCCTCTCGTACGGCCCCTGTTGCTATTTTGCATGTGCGCAGTCACTCTGAGGTGCCAGGCTTTTTTACAACAGGTAACGCGGTGGCAGACAAAGCCGCCAGTACGCAGGTTTTTACAGTCCAGGAAGCCCGTGATCTCCACTCTACTCTTCATATAGGGGCCCGNGCGCTCTCTAGGGCTTGTTCCATCCCACTATCTGTTGCGCGCGATGTTGTTCAGGCNTGTCCTCATTGTAACTCGGCGCCTGTCATAGGGGCCGGGGTTAACCCCCGCGGCCTNGGACCATTACAGGTNTGGCAAACAGATTTCACCTGGGAGCCNCGTCTATCNCCCCGTCCATGGCTAGCGGTTACGGTAGATACCTCCTCTACCGTCATTGTAGCCACNCAACATGCTAAGTCCAATTCAACATCAGCACAGAATCACTGGGCAACCGCTATCGCCATACTTGGCCTGCCTAGCCAGATTAAGACAGACAACGGATCGTGTTTCATCTCACGCTCAACGCAGGAATGGCTGGCGGTGTGGGGGATCTCCCACATTACGGGCATCCCTGGTAATTCCCAGGGTCAGGCAATAGTGGAACGCGCCAACCGACTCCTCAAGGATAAGATACGTGTCCTTGGGGAGGGGGAAGGATATAGGGACAGGATACCTGTCGGTAGACAGGCTGAGCTCCTGGCGAAAGCCCTCTACGCATTGAACCATTTTGAGCGTGGTGACAGTAAGCGAACGCCAGTGCAGAAGCATTGGCAGCCAAAGGTCTTGGGTGAAGGGCCTCCAGTCAGAGTAAAGACAGATAGCGGACNATGGGAAGAAGGATGGAGGATATTGGTGTGGGGTAGGGGGTACGCCGCAGTAAAACATGNGGAGACAGGGAAAATTGTATGGACTCCATCACGGAAGGTTAAACCGGATCTCAGAAAGGACGNCTGAGATTATAACCCGTTCCGTATTTGTGTAATAAGCAAGACAAGAGTTCCCTTTTGCAGAAGCTGCTGGTGGGAAAACCGAAGCCAACTCCAGAACAACCGGGGGACGGACGACGGGACCGAGAGCCACTCATCAAGAGGAGCACCACACCTGCAACGCCGACACTTCTGATACTGCTGATGTTTATGGTAACGGGGGGGGAGGGAGTACACCTTNTACAACAGCCACGCAATGTTTGGGTCACGTGGGCGAATCTCACGGGGCGGACAGACTTCTGTCTTGGCCTTCAGTCCGCTACCTCTCCCTTCCGCACCTGTTTGGTGGGTTTGCCGAGTTACCAATTGGAGGAGTTTAGGGGATATACGGTCAACTACACTGTGTGTAGGAATGAAACGGACGCTGCTACNCAAACGGCGTGTCTGATTCAATCATTAAACCATACCCTCCCCTGGGACCCCCAAGAATTGGATATTTTAGGGTCTCAAATGATCAGGAACGGAACAACACGTACGTGTGTCACCTTTGGTTCAATGTGCTATACAGAGAACGATCATAGCAGAGTCTGTCACAATTTTGATGGGAATTTTGATGGGGCTGGTGGGGTGGAGGCAGAATTGCGTGACCTCATAGCGAGATGGAGTAATGATGACCCTCGTATAAGACCCTATGCTAACCGATCATGGACGGTGGTGAGTCCAATGAACATGGAGAGTTTTTCGATAGCTGGTGCATATTGTGGNTTCACAAAGAACGAAACTCGTTATTATAAAGGGGGCTCTTCTGATTGGTGTGGGTCAAAAGGAGGAAAATGGTCAGAGGGACACAGGAATGGGACAACATGCTCTGGGTGCGGTGGTAATTGCACGGCGGAATGGAACAATTATGCATATGGGTTCACCTTCAGGAGGAATGTGTCGGAGGTATTGTGGAATAATGGGACTGCTAAAGCACTCCCCCCAGGTATCTTCCTGATTTGTGGCGATAGGGCATGGCAAGGTGTACCAGCTAATCCTCTGGGAGGTCCGTGTTACTTAGGGAAGTTAACGATGTTTGCTCCAAATCATACAGGATGGCTTAATATATCTCGCAGTTTACATCCTCGCAGGCGCCGCCGCGGCGCGAGCCTGGGACCTGAGTGTAACGATGATGTTAAGNTGTGGGGCGTCACAGCACGTATCTTCGCATCGATCTTCGCGCCAGGAGTCTCAGCAGCGGCGGCCTTGGCCCAGATAGAAAGGTTGGCATGTTGGTCGGTAAAACAGGCGAATACGACCACGCTTGTGTTAAATGCTATGCTNGAAGATCTTAATAGTGTCCGTCATGCACTGCTACAGAATAGAGCAGCTATTGACTTCTTGCTGTTGGCTCAAGGACATGGATGTGAGGATGTCGAAGGAATGTGCTGCTTTAACCTCAGTGATCACAGCGTGTCGATTCATAAACAACTACAATGGATGCAAGAACACACGCAGAAGATTAAAGAAGAGAGTGATCCCTTCGGGAACTGGCTGGACGGACTGTTTGGGGGAGTGGGTTCATGGTTAAAGCAATTGCTTAAGGCTCTCGCGGTAGGGCTTGCAATCTTTGTGTGTATTCTGATCTGTCTTCCATGCTTTGTAGGATGCTTGCAGAACTGCCTTGCAACGAATGATGGAAAAGACTTTTGACCATCGGATTGAGTATCACAGACTGCGTGAAAAGTTGTAGAGGGGTTTAGGTTGTTGCGTTCGTGCTGTAACGGGGCAAGGCTTGGCCGAGCACGGGGAGTCGGGTTATGACGGGAAAGGACTCCCTGTTGCTCTGATGNTTGCTTAAAGGATTGCAGTAGAAGGTAGTAGGAATAGTGTGCTGAAATGTATTTAGGATTAGGCGCTTTGCGCTGCTTCGCGATGTACGGGTTAGGCGTGTGTGTAAGTAGTATTTAGCTTAGGGAGGGGGAGATGT
>GGLTR1#LTR/ERVK  GGERVK1 LTR @cut @general @gallus
TGTTGTAATAGGCGTGATCGGGGTCTCGGGATGTAACGTGTCAGGCTCCTCCCCATGTGTTAGGTACGTGCCACGTGTACCATCCAGTGGGCGTACACGAAGGGTTAAAAGATATATAAGTGCTTGTTAGAACTTAATAAACGCCATTTTGCCGCTCATCATATTGGTGTCACCTCGGTATTTGGCCAAGCCGCAGGCTCCCCTAAGCAACGAACATCACGGTTGCCTGCGAAAGGCAACA
>GGLTR10A#LTR/ERVK LTRs of EAVHP   Matches other GGLTR10 LTRs  from pos 140 to 280, so included in this group for ease of analysis.  @cut @general @gallus
TGTTGTATGCGTAGCGAGGGAAACGAGGTGTGTTGTAGGCGTAGCGAGGGAAACGAGGTGTGACGCGTGCAGGTTCCTATGCCACCTGTGTGTTATGCCACCTGTGTGTGCCAAGTGTAACTTCGTGATTGGAGGAAACACTTGTATTTAAACACGTAGCCTATAGCAATAAACGCCATTTGCCTCACTTACTCCTGGGGTCTGGGTGAGCATCTGGCCCCGACCTGGTAAAGGGTCGGTTTCGCCCAGCAGTAAGCCCTACACGTGGACAGAGGACGAACACCGGACGAGCGAACGGAGACTACATGCAACA
>GGLTR10B#LTR/ERVK  LTRs of GGERVK10-derived non-autonomous element 1-2% div @cut @general @gallus
TGTAGTAGGCGTCTTGCGGGGGCACGGGATGTACGGGACAGGCCTCTCCCTAAACATAGAGAGATAGTGCTATCGTGCTGACCTTGTTGCAGAGAAAACAGGAGAAGAAGAAGGATGATAAAAGAATGTGGAAACGGCCAAATAAGGCACAATGTTATCTGGTGTGAACTAATCAGAGTGGGACATGACAGCACGGTTATCTAGGTAAAAATGTATATAAGCTGTGTTTAGTAGTGAATAAACGCCATTTGCCTCACTTACTCCTGGGGTCTGGGTGAGCATCTGGCCCCGACCTGGTAAAGGGTCGGTTTCGCCCAGCAGTAAGCCCTACATGTGGACAGAGGACGAACACCGGACGAGCGAACGGAGACTACATGCAACA
>GGLTR10C-int#LTR/ERVK Internal sequence of GGERVK10  derived non-autonomous element. GG000586, GG0000067, GG000612, GG000135, GG000068  @erv @gallus
AATGGTGCCCCGTGTGAGGCGCAGACTGTGTTTTGATGCCCTCTGCGCGGCTACGAGATGTGGGGTGACGCCGTAGCACGAGATTTGGGGTGACGCCCAGCCCGAGTACCCTGAGGAGAGGGGGAGCCTGCAGAAGACGACTGGGGTGACGCCCTGCAGAAGATCGTGGCGACGACGATAGTGCCGGCCGGCAAGTAGAACCTGTGTTGCGGTGGGGTCCGGGGGGGACGACGGGACGCCCACGGAGGACCCGTGTGGTGACGGCGGTGTCGANTGTGAATTCGCGGTGACGGCGACGGGCTGACTATGGAACATGTTCTTAAGGTATTGCTTCAGTTTTGTAAGGATTACTTTGGCAAGTATGCTCCTTCTAAGAAGGATATCCACGCAGTTATTTCCCGGTTAGAGCGGGAGGGGGAGGTTAAAGCCCCCCACGAGATCCTTGATCACCGGAGGTGGGATGATCTCACCTCTGNGTTCGCGCAACATATTATGAGTGCTCAGGAGGGCGGGTCGGAGTTAAAAACTTGGGGTCTGATACTGGGGGCGTTGAAAGCGGCCAGAGTGGAGGGAAAGGTATTGGCGGAGGCTCGATACCTTTTGGGTCTCGGCGGTGGAGGCGAGACACCGGACCCGGTGGGGTCCGATGGGGGCTCGGGAGCAGTTTCTTGCAGGGGCCGAGAGGAGACGGAGCCGCCAATGACCGTTGGCGAGATGGCGCCGGCTGAGCCGACCGCGCTCAGTTCAAAAGAAGACAAACAACAAGAGAGTGGATGTTCGTTGTCTCGTCCCCCTCCCCCGTATCCGGACCCCTCAGGCGGAACGTTGTATCCTTTATCAGAATTACGTCAGTGTTACCTGACTCAAGGGGGCGGAGGAAGCTGTGATCTACACGGGCAGGATCAACTTACTGCCCACATGGGGAGGGACCAGACGAAAGGTCCGTCCAATGCGGACAGGGGGCATAGCCTACCGTCTCTGGTCACTCCCAGGGGCGGTAGTGCGAGTGATAGTGTAGAGGAGAAAGAAGGGACTGGCTTTGAGTGCAGGGGGAGGGATCAAATGACGGACTGGAATCGGATTAGATCGGAGGCTGAGGGGAAGGGTATAGTTCCAGAGGCATTCCCGGTGATTGTGAGTGATCGTGGTCCCGAATGGGTGCCGCCTGACCCCGGGGGTGTTGCGCGCCTGGTGGAATTTATGGATAAAAGAGGCCTGAAATCGCCTCTGACGTTAAATGCACTACAAACTTTGGCTGCACCGGGGCCTCTCCTCCCCCGTGACATCACAAACCTAATGCGTATGGTGCTCAGGCTGGTTCAATATACGTTATGGGAGACGGACTGGATGGCCGAGTTGGGGGGGCGTGCCGGGGCGGCAGGGGTCGGCCCGGGCCGCTCCCTGCGTGGGACCGGCATCCAGCGGCTTTCAGGGAAGGCCGTGGGAGTGGCTTCGCCCCAGGGCCAGCTAGCGAGACTAAGGCCAGGGGAGCTAATAGCAGCCACAGATGCAATGGTGGAAGCGTTTAATAAACTTGTGCATAAGGCCGAACCACCTGCTCCGTGCACAGATATTACCCAGGGCCCGAATGAATCCTTTCAAAGCTTTGCAGACAGGCTTTTAGCTGCTGCAGAGGGGTCTGATCTCCCGGNACCGGCCCAAGGGCCAGTGATCATTGACTGCCTGCAGCAGAAATCGCATGACAATGTTAAGGCATTGCTGCGAGCCGGCCCGAGTACGCTTAATACCCCGGGAGAAGTTATTCAGTATGTCTTAGATAAGCTCAAGGTGGCTCATTTAACTAATGAAGGGCTAGCCACAGCTATTGTCGCAGCTGTTGGCCCGCGACAGCAAAGATCGCTGCAGCAGCAAGGGCTGTGTTTCCGATGCGGCCAGTATGGCCACGTTAGAGCACAATGCCCCTGTGGGGGAGGCCAGTCAGGGCCTCCTGATCACAGGAAGGGCTTGCTAAAGGGTATCCGTGGTCGGGTATGCGGCAGTTAAACATCATGAATCTGGGAAATTCTGTGGGTACCATCGCGAAAAGTAATACCAGATATAAGTAGCATATCTGCAAAAACTGAGTCTAGGTGCGAGTTTTCTACAGAAATTCTTCGTTGGCAGACCGAAGCCAACTCCAGAACAACTGAGGGACAGACGATGGGATCAAGAACCACTCGTCAAGAGGAGCACTACACCTGCAACGCTGACACTTCCGATGTTGCTGATGTTTATGGTGTCCNTGGCGATTACAGCGTGTCACAAACAACTACAATGGACACAAGAACATATGCAGAAGATTAAAGAAGAGCGTGATCCCTTTGGAAGCTGGCTGGACGGACTGTTTGGGGGAACGGGTTCATGGTTAAAGCAATTGCTTAAAGCTCTCGCAGTAGGATTTGCAATCTTTGTGTGTATTCTAATCTGTCTTCCATGCTTTGTAGGATGCTTGCAGAACTGCCTTCAACGAATGATGGACAAGACTTTTGACTATCGCATTGAGTATCATAGATTGCGTGAAAAATTATAGAGGGGTTTAGGTTGTTGCGTTCGTGCTGTAACGGGGCAAGGCTTGGCCGAGCACGGGAAAGAATTCCCTGTTGCTCTGATGATTGCTTAAGAAT
>GGLTR10C1#LTR/ERVK  LTRs of GGERVK10 GG000020, GG000059, GG000012 bp 204-291 matches the core of GGLTR1 (the LTR of GGERVK1) 1-3% div @cut @general @gallus
TGTAGTAGGCGTCTTGCGGGGCTACGGGATGTACGGGACAGGCCTCTCCCTAAGCATAGAGAGACAGTGCTATCGTGCTGACCTTGATGCAGAGAAAACAGGAGAAGAAGAAGGATGAGAAAAGAATGTGGAAACGGCCAAATAAGGCACAATGTTATCTGGTGTGAACCAATCAGAGTGGGACATGACAGCACGGTTTTGTAGGTAAAAATGTATATAAGCTGTGTTTAGTAGTGAATAAACGCCATTTTGCTGCTCATCATATTGGTGTGTGTCTGCAGTCATTTGGCCCTGATCAGGCTATTGGTCAGTGCGTGCAGAGGCCTAACACAGGTGGCTAACATCGTTGTTGCNGAAAGCAACA
>GGLTR10C2#LTR/ERVK GG000020, GG000059, GG000012 LTRs of GGERVK10 or derived seqs bp 204-291 matches the core of GGLTR1 (the LTR of GGERVK1) 1-3% div  @cut @general @gallus
TGTAGTAGGCGTCTTGCGGGGGCACGGGATGTACGGGACAGGCCTCTCCCTAAGCATAGAGAGACAGTGCTATCGTGCTGACCTTGATGCAGAGAAAACAGGAGAAGAAGAAGGATGAGAAAAGAATGTGGAAACGGCCAAATAAGGCACAATGTTATCTGGTGTGAACCAATCAGAGTGGGACATGACAGCACGGTTATGTAGGTAAAAATGTATATAAGCTGTGTTTAGTAGTGAATAAACGCCATTTTGCTGCTCATCATATTGGTGTGCGTCTGCAGTCATTTGGCCCTGATCAGGCTATTGGTCAGTGCGCGCAGAGGGCTAACACAGGTGGCTAACATCGTTGTTGCAGAAAGCAACA
>GGLTR10D#LTR/ERVK LTRs of GGERVK10-derived non-autonomous element 1-2% div @cut @general @gallus
TGTTGTAGTAAGCGTCTTGCGGGGGCACGGGATGTACGGGACAGGCCTCTCCCTAAGCATAGAGAGACAGTGCTATCGTGCTGACCTTGATGCAGAGAAAACAGGAGAAGAAGAAGAATGAGAAAAGAATGTGGAGACGGCCAAATAGGGCACGGTGTTGTCTGGTATGAACCAATCAGAGTGGGACATGACAGCACGGTTTTGTAGGTAAAAATGTAATATAAGCTGTGTTTTAGTAGTGAATAGAGGCCATTTTACCGCTCATCATATTGGTGTCACCTCGGTATATGGCCAAGCCGCAGGCTCCCCTAAGCAACGAACATCACGGTTGCCTGCGAAAGGCAACA
>GGLTR10D-int#LTR/ERVK Internal sequence of GGERVK10  derived non-autonomous element. GG000586, GG0000067, GG000612, GG000135, GG000068  @erv @gallus
AGTGGTGACCCCGACGTGATGCTTAGGGGAACGAGTCGGCTGTCTGCTTGACGGGGCAGGAGCCCACCGCGGGGCGTTAGCACTTGCTGGGCGGTGGAAGCCCGGGGACGAGCCCGGGGACAGAGGGAATCTGCAGTCACCCCTCTGTCGGCGGAGGTCGCGGACGAGCGACGGATATAGCCTCCGGAATCACGCCGGAGAAGAGCCTGGGATCCTGGTCTCAATTGGGAGGAGGATCGGAGGCGACATGGAAACCGTCATAAAGGTGATCGCTCACGCGTGTAAGACCTATCACGGGAAGCATGCTCCTTCTCGGAAGGAGATAGCTGCGGTCCTCTCGCTGCTAAATGAGANGGAGGGGCTGTTGACATCGCCCCGCGATATTTGTGACTNCAATAATTGGGATTCGATTACCGCTGCCTTATGCCAGCGCGCAATGGCCACTCAGAAAACAGCGGAGCTNAAAACNTGGGGNCTGATACTGGGGGCGTTGAAAGCGGCCAGAGTTGAGGGAAAGGTATTGGCGGAGGCTCGATACCTTTTGGGTCTCGGCGGAGGAGGCGAGACACNGGACCCGGTCGGGTCCGATGGGGGCTCGGGAGCAGTTTCTTGCAGGGGCCGAGAGGAGACGGAGCCGCCAATGACCGTTGGCGAGATGGCGCCGGCTGAGCCGACCGCGCTCAGTTCAAAAGAAGACAAACAACAAGAGAGTGAANGTTCGTTGTCTCGTCCCCCTCCCCCGTATCCGAACCCCTCAGGCGGAACGTTGTATCCTTTATCAGAATTACGTCAGTGTTACCTGACTCAAGGGGGCGGAGGAAGCTGTGATCTACATGGGCAGGATCAACTTAGTGCCCACATGGGGAGGGACCAGACAAAAGGTCCGTCCAATGCGGACAGGGGGCATAGCCTACCGTCTCTGGTCACTCCCAGGGGCGGTAGTGCGAGTGATAGTGTAGAGGAGAAAGAAGGGACTGGCTTTGAGTGCAGGGGGAGGGATCAAATGACGGACTGGAATGGGATTAGATCGGAGGCTTTGGGGAAGGGTATAGTTCCAGAGGCATTCCGGGTGATTGTGAGTGATCGTGGTCCCGAATGGGTGCCGCCTGACCCCGGGGGTGTTACGCGCCTGGTGGAATTTATGGATAAAAGAGGCCTGAAATCGCCTCTGACATTAAATGCACTACAAACTTTGGCTGCACTGGGGCCTCTCCTCCCCCGTGACATCACAAACTTAATGCGTATGGTGCTCAGGCTGGTTCAGTATACGTTATGGGAGACGGACTGGATGGCCGAGTTGGGGGGCCGTGCCGGGGCGGCAGGGGTCGGCCCGCGCCGCTCCCTGCATGGGACCGGCATCCAGCGGCTTTCAGGGAAGGCCGTGGGAGTGGCTTCGCCCCAGGGCCAGCTAGCGAGACTAAGGCCAGGGGAGCTAATAGCAGCCACAGATGCAATGGTGGAAGCGTTTAATAAACTTGTGCATAAGGCCGAACCACCTGCTCCGTGCACAGATATTACCCAGGGCCCGAATGAATCCTTTCAAAGCTTTGCAGACAGGCTTTTAGCTGCTGCAGAGGGGTCTGATCTCCTGGAACCGGCCCAAGGGCCAGTGATCATTGACTGCCTGCAGCAGAAATCGCATGACAATGTTAAGGCATTGCTGCGAGCCGGCCCAAGTACGCTTAATACCCCGGGAGAAGTTATTCAGTATGTCTTAGATAAGCTCAAGGTGGCTCATTTAACTAATGAAGGGCTAGCCACAGCTATTGTCGTAGCTGTTGGCCCGCGACAGCAAAGATCGCTGCAGCAGCAAGGGCTGTGTTTCCGATGCGGCCAGTATGGCCACGTTAGAGCACAGTGCCCCTGTGGGGGAGGCCAGTCAGGGCCTCCTGATCGCAGGAAGGGCTTGCTAAAGGGTATCCGTCGTCGGGTATGCGGCAGTTAAACATCATGAATCTGGGAAAATTCTGTGGGTACCATCGCGAAAAGTAATACCAGATATAAGTAACATATCTGCAAAAACTGAGTCTAGGTGCGAGTTTTCTACAGAAATTCTTCGTTGGCAAACCGAAGCCAACTCCAGAACAACTGAGGGACAGACGATGGGATCAAGAACCACTCATCAAGAGGAGCACTACACCTGCAACGCTGACACTTCCGATGTTGCTGATGTTTATGGTGTCCCTGGCGATTACAGCGTGTCGCAAACAACTACAATGGACGCAAGAACATATGCAGAAGATTAAAGAAGAGCGTGATCCCTTTGGGAGCTGGCTGGACGGACTGTTTGGGGGAACGGGTTCATGGTTAAAGCAATTGCTTAAGGCTCTCGCAGTAGGGTTTGCAATCTTTGTGTGTATTCTAATCTGTCTTCCACGCTTTGTAGGATGCTTGCAGAACTGCCTTCAACGAATGATGGANAAGACTTTTGACTATCANATTGAGTATCATAGACTGCGTGAAAAGTTGTAGAGGGGTTTAGGTTGTTGCGTTCGTGCTGTAACGGGGCAAGGCTTGGCCGAGCACGGGAAAGGATTCCCTGTTGCTCTGATGATTGCTTAAGAATTGTAGAAAGTAGTAGGAATAGTGTGCTGAAATATATTTAGGATTAGGCGTTTTGCGCTGCTTCGCGATGTACGGGTTAGGCGTGTGTGTAAGTAGTATTTAGCTTAGGGAGGGGGAGA
>SRV-LTR#LTR/ERVK The Rous sarcoma virus LTR. Related to original GGLTR2 element (LTR of the Avian myeloblastosis virus), which has no copies in the chicken genome. @general @gallus
TGTAGTCTTAATCGTAGGTTAACATGTATATTACCAAATAAGGGAATCGCCTGATGCACCAAATAAGGTATTATATGATCCCATTGGTGGTGAAGGAGCGACCTGAGGGCATATGGGCGTTAACAGAACTGTCTGTCCTTGCGTCATTCCTCATCGGATCATGTACGCGGCAGAGTATGATTGGATAACAGGATGGCACCATTCATCGTGGCGCATGCTGATTGGTGCACTAAGGAGTTGTGTAACCCACGAATGTACTTAAGCTTGTAGTTGCTAACAATAAAGTGCCATTCTACCTCTCACCACATTGGTGTGCACCTGGGTTGATCGCCGGACCGTCGATTCCCTGACGACTGCGAACACCTGAATGAAGCTGAAGGCTTCA
>SRV-int#LTR/ERVK Rous sarcoma or avian leukosis virus internal sequence. 1 copy in chicken genome ORFs 280-2385, 2325-5090, 4945-6810 @erv @gallus
TTTGGTGACCCCGACGTGATCGTTAGGGAATAGTGGTCGGCCACAGGCGGCGTGGCGATCCTGCCCTCATCCGTCTCGCTTAACGGAGCGAGGACGATGACCCTAGTAGAGGGGGCTGCGGCTTAGGAGGGCAGAAGCTGAGTGACGTCGGAGGGAGCTCCACGGCCGGGGGCCAAGATAACCTACCGAGAACTCAGAGAGTCGTTGGAAGACGGGAAGGAAGCCCGACGACTGAGCAGTCCACCCCAGGCGCGATTCCGGTCGCCCGGTGGATCAAGCATGGAAGCCGTCATAAAGGTGATTTCGTCCGCGTGTAAAACCTATTGCGGGAAAACCTCTCCTTCTAAGAAGGAAATAGGGGCCATGTTGTCCCTGTTACAAAAGGAAGGGTTGCTTATGTCCCTCTCAGACTTATATTCCCCGGGGTCCTGGGATCCCATTACCGCGGCACTCACCCAGCGGGCAATGGTACTTGGGAAATCGGGAGAGTTAAAAACCTGGGGATTGGTTTTGGGGGCATTGAAGGCGGCTCGAGAGGAACAGGTTACATCTGAGCAAGCAAAGTTTTGGTTGGGATTAGGGGGAGGGAGGGTCTCTCCCCCAGGTCCGGAGTGCATCGAGAAACCAGCAACGGAGCGGCGAATCGACAAGGGGGAGGAAGTGGGAGAAACAACTGTGCAGCGAGATGCGAAGATGGCGCCGGAGGAAACGGCCACACCTAAAACCGTTGGCACATCCTGCTATCATTGCGGAACAGCTATTGGCTGTAATTGCGCCACAGCCTCGGCCCCTCCTCCTCCTTATGTGGGGAGTGGTTTGTATCCTTCCCTGGCGGGGGTGGGAGAGCAGCAGGGCCAGGGGGGTGACACACCTCGGGGGGCGGAACAGCCAAGGGCGGAGCCAGGGCACGCGGGTCAGGCCCCTGGGCCGGCCCTGACTGACTGGGCAAGGATCAGGGAGGAGCTTGCGAGTACAGGTCCGCCCGTGGTGGCCATGCCTGTAGTGATTAAGACAGAGGGACCCGCCTGGACCCCTCTGGAGCCAAAATTGATCACAAGACTGGCTGATACGGTCAGGACCAAGGGCTTACGATCCCCGATCACTATGGCAGAAGTGGAAGCGCTTATGTCCTCCCCGCTGCTGCCGCATGACGTCACGAATCTAATGAGAGTTATTTTAGGACCTGCCCCATATGCCTTATGGATGGACGCTTGGGGAGTCCAACTACAGACGGTTATAGCGGCAGCCACTCGCGACCCCCGACACCCAGCGAACGGTCAAGGGCGGGGGGAACGGACTAACTTGGATCGTTTAAAGGGTTTGGCGGATGGAATGGCCGGCAATCCAGAGGGTCAGGCTGCATTATTAAGACCGGGGGAACTGGTTGCTATTACGGCGTCGGCTCTCCAGGCGTTTAGAGAGGTCGCTCGGTTGGCGGAACCCACAGACCCGTGGGCGGAAATTACGCAGGGACCATCTGAGTCCTTTGTGGATTTTGCCAATCGTCTTATAAAGGCGGTTGAAGGGTCAGATCTCCCACCTTCCGCGCGGGCTCCGGTGATCATTGACTGCTTTAGGCAGAAGTCACAGCCAGATATCCAGCAGCTTATACGGGCAGCACCCTCCACGCTGACCACCCCAGGAGAGATAATCAAATATGTGCTAGACAGGCAGAAGACTGCCCCTCTTACGGATCGAGGCATAGCCGCGGCCATGTCGTCTGCTATTCAGCCCTTAGTTATGGCAGTAGTCAATAGAGAGAGGGATGGACAAACTGGGTCGGGTGGTCGTGCCCGAGGGCTCTGCTACACTTGTGGATCCCCGGGACATTATCAGGCGCAGTGCCCGAAAAAACGAAAGTCAGGAAACAGCCGTGAGCGATGTCAGTTGTGTGACGGGATGGGACACAACGCTAAACAGTGCAGAAGGCGGGATGGCAACCAGGGCCAACGCCCAGGAAGAGGCCTCTCTTCGGGGCCGTGGCCCGTCTCTCAGCAGCCTGCCGTCTCGTTAGCGATGGCAATGGAACATAAAGATCGCCCCTTGGTTAGGGTCATTTTGACTAACACTGGGAGTCATCCGGTCAAACAGCGTTCGGTGTATATCACCGCGCTGTTGGACTCTGGAGCGGACATCACTATTATTTCAGAGGAGGACTGGCCCACCGATTGGCCAGTGATGGAGGCCGCGAACCCGCAGATCCATGGGATAGGAGGGGGAATTCCCATGCGAAAATCCCGGGATATGATAGAGGTGGGGGTTATTAACCGAGACGGGTCTTTGGAGCGACCCCTGCTCCTCTTCCCCGCAGTAGCTATGGTTAGAGGGAGTATCCTAGGAAGAGATTGTCTGCAGGGCCTAGGGCTCCGCTTGACAAATTTATAGGGAGGGCCACTGTTCTTACTGTTGCGCTACATCTGGCTATTCCGCTCAAATGGAAGCCAGACCACACGCCTGTGTGGATTGACCAGTGGCCCCTTCCTGAAGGTAAACTTGTAGCGCTAACGCAATTAGTGGAAAAAGAATTACAGTTAGGACATATAGAACCTTCACTTAGTTGTTGGAACACACCTGTCTTTGTGATCCGGAAGGCTTCCGGGTCTTATCGCTTATTGCATGACTTGCGCGCTGTTAACGCCAAGCTTGTTCCTTTTGGGGCCGTCCAACAGGGGGCGCCAGTTCTCTCCGCGCTCCCGCGTGGCTGGCCCCTGATGGTCCTAGACCTCAAGGATTGCTTCTTTTCTATTCCTCTTGCGGAACAAGATCGCGAAGCTTTTGCATTTACGCTCCCCTCTGTGAATAACCAGGCCCCCGCTCGAAGATTCCAATGGAAGGTCTTGCCCCAAGGGATGACCTGTTCTCCCACTATCTGTCAGTTGGTAGTGGGTCAGGTACTTGAGCCCTTGCGACTCAAGCACCCATCTCTGTGCATGTTGCATTATATGGATGATCTTTTGCTAGCCGCCTCAAGTCATGATGGGTTGGAAGCGGCAGGGGAGGAGGTTATCAGTACATTGGAAAGAGCCGGGTTCACCATTTCGCCTGATAAGATCCAGAGGGAGCCCGGAGTACAATATCTTGGGTACAAGTTAGGCAGTACGTATGTAGCACCCGTAGGCCTGGTAGCAGAACCCAGGATAGCCACCTTGTGGGATGTTCAAAAGCTGGTGGGGTCACTTCAGTGGCTTCGCCCAGCGTTAGGAATCCCGCCACGACTGATGGGCCCCTTTTATGAGCAGTTACGAGGGTCAGATCCTAACGAGGCGAGGGAATGGAATCTAGACATGAAAATGGCCTGGAGAGAGATCGTACAGCTTAGCACCACTGCTGCCTTGGAACGATGGGACCCTGCCCTGCCTCTGGAAGGGGCGGTCGCTAGATGTGAACAGGGGGCAATAGGGGTCCTGGGACAGGGACTGTCCACACACCCAAGGCCATGCTTGTGGTTATTCTCCACCCAACCCACCAAGGCGTTTACTGCTTGGTTAGAAGTGCTCACCCTTTTGATTACTAAGCTACGTGCTTCGGCAGTGCGAACCTTTGGCAAGGAGGTTGATATCCTCCTGTTGCCTGCATGCTTTCGGGAGGACCTTCCGCTCCCGGAGGGGATCCTGTTAGCCCTTAAGGGGTTTGCAGGAAAAATCAGGAGTAGTGACACGCCATCTATTTTTGACATTGCGCGCCCACTGCATGTTTCTCTGAAAGTGAGGGTTACCGACCACCCTGTACCGGGACCCACTGTCTTTACCGACGCCTCCTCAAGCACCCATAAGGGGGTGGTAGTCTGGAGGGAGGGCCCAAGGTGGGAGATAAAAGAAATAGCTGATTTGGGGGCAAGTGTACAACAACTGGAAGCACGCGCTGTGGCCATGGCACTTCTGCTGTGGCCGACAACGCCCACTAATGTAGTGACTGACTCCGCGTTTGTTGCGAAAATGTTACTCAAGATGGGACAGGGGGGAGTCCCGTCTACAGCGGCGGCTTTTATTTTAGAGGATGCGTTAAGCCAAAGGTCAGCCATGGCCGCCGTTCTCCACGTGCGGAGTCATTCTGAAGTGCCAGGGTTTTTCACAGAAGGAAATGACGTGGCAGATAGCCAAGCCACCTTTCAAGCGTATCCCTTGAGAGAGGCTAAAGATCTTCATACTGCTCTCCATATTGGACCCCGCGCGCTATCCAAAGCGTGTAATATATCTATGCAGCAGGCTAGGGAGGTTGTTCAGACCTGCCCGCATTGTAATTCAGCCCCTGCGTTGGAGGCCGGGGTAAACCCTAGGGGTTTGGGACCCCTACAGATATGGCAGACAGACTTTACGCTTGAGCCTAGAATGGCCCCCCGTTCCTGGCTCGCTGTTACTGTGGATACCGCCTCATCGGCGATAGTCGTAACTCAGCATGGCCGTGTCACATCGGTTGCTGCACAACATCATTGGGCCACGGCTATCGCCGTTTTGGGAAGACCAAAGGCCATAAAAACAGATAACGGGTCCTGCTTCACGTCTAAATCCACGCGAGAATGGCTCGCGAGATGGGGGATAGCACACACCACCGGGATTCCGGGTAATTCCCAGGGTCAAGCTATGGTAGAGCGGGCCAACCGGCTCCTGAAAGATAAGATCCGTGTGCTTGCGGAGGGGGACGGCTTTATGAAAAGAATCCCCACCAGCAAACAGGGGGAACTACTAGCCAAGGCAATGTATGCCCTCAATCACTTTGAGCGTGGTGAAAACACAAAAACACCGATACAAAAACACTGGAGACCTACCGTTCTTACAGAAGGACCCCCGGTTAAAATACGAATAGAGACAGGGGAGTGGGAAAAAGGATGGAACGTGCTGGTCTGGGGACGAGGTTATGCCGCTGTGAAAAACAGGGACACTGATAAGGTTATTTGGGTACCCTCTCGAAAAGTTAAACCGGACATCACCCAAAAGGATGAGGTGACTAAGAAAGATGAGGCGAGCCCTCTTTTTGCAGGCATTTCTGACTGGATACCCTGGGGAGACAAGCAAGAAGGACTCCAAGGAGAAACCGCTAGCAACAAGCAAGAAAGACCCGGAGAAGACACCCTTGCTGCCAACGAGAGTTAATTATATTCTCATTATTGGTGTCCTGGTCTTGTGTGAGGTTACGGGGGTAAGAGCTGATGTTCACTTACTCGAGCAGCCAGGGAACCTTTGGATTACATGGGCCAACCGTACAGGCCAAACGGATTTCTGCCTCTCTACACAGTCAGCCACCTCCCCTTTTCAAACATGTTTGATAGGTATCCCGTCCCCTATTTCCGAAGGTGATTTTAAGGGATACGTCTCTGATAATTGCACCACCTTGGGAACTGACCGGTTAGTCTCGTCAGCCAGCATTACCGGCGGCCCTGACAACAGCACCACCCTCACTTATCGAAAGGTTTCATGCTTGCTGTTAAAGCTGAATGTCTCTATGTGGGATGAGCCACCGGAACTACAGCTGCTAGGTTCCCAGTCTCTCCCTAACATTACTAATATTACTCAGATTTCTGGTGTAACTGGGGGATGCGTAGGCTTCACCCCACACTCCAATCCAAGTGGTGTTTACGGGTGGGACCGGAGACAGGTTACACACAACTTCTTGATCGCCCCGTGGGTCAATCCTTTCTTTAACAGCGCTTCTAACTCCACGGAACCGTTTACGGTGGTGACAGCGGATAGACACAATCTTTTTATGGGGAGTGAGTACTGCGGTGCATATGGCTACAGATTTTGGGAAATATATAATTGCTCACACAGATTTGATAATTTTGATATTTACACCTGTGGAGATGTGCAGACAGTCAAATCCCCCGAAAAACAGTGTGTGGGGGGAGGAGGTATATGGGTTAATCAATCAAAGGAAATTAATGAGACAGAGCCGTTCAGTTTTACTGCGAACTGTACAGCTAGTAATTTGGGTAATGTCAGCGGATGTTGTGGAAAAACGATCACGATTCTCCCATCAGGGGCGTGGATCGACAGCACACAAGGTAGTTTCACCAAACCAAAAGCGCTACCACCCGCAATTTTCCTCATTTGTGGGGATCGCGCATGGCAAGGAATTCCCAGTCGTCCGGTAGGGGGCCCCTGCTATTTAGGCAAGCTTACCATGTTAGCACCTAACCATACAGATATTCTCAAGGTGCTTGCCAATTCATCGCGGACAGGTATAAGACGTAAACGAAGCACCTCACACCTGGATGATACATGCTCAGATGAAGTGCAGCTTTGGGGTCCTACAGCAAGAATCTTTGCATCTATCTTAGCCCCGGGGGTAGCAGCTGCGCAAGCCTTAAGAGAAATTGAGAGACTAGCCTGTTGGTCCGTTAAACAGGCTAACTTGACAACATCACTCCTCGGGGACTTATTGGATGATGTCACGAGTATTCGACACGCGGTCCTGCAGAACCGAGCGGCTATTGACTTCTTGCTTCTAGCTCACGGCCATGGCTGTGAGGACGTTGCCGGAATGTGTTGTTTCAATCTGAGTGATCACAGTGAGTCTATACAGAAGAAGTTCCAGCTAATGAAGGAACATGTCAATAAGATCGGCGTGGACAGCGACCCAATCGGAAGTTGGCTGCGAGGATTATTCGGGGGAATAGGGGAATGGGCCGTTCATTTGCTGAAAGGACTGCTTTTGGGGCTTGTAGTTATTTTGTTGCTAGTAGTGTGCCTGCCTTGCCTTTTGCAAATTGTGTCCAGTAGCATCCGAAAGATGATTAATAATTCAATCAGCTATCACACGGAATATCAGAAGTTGCAAAAGGCTTGTAGGCAGCCCGAAAATGGAGCAGTGTAAAGCAGTACATGGGTGGTGGTATGAAACTTGCGAATCGGGCTGTAACGGGGCAAGGCTTGACTGAGGGGACCATAGTATGTATAGGCGAAAGGCGGGGCTTCGGTTGTACGCGGTTAGGAGTCCCCTCAGGATACAGTAGTTGCGCTTATGCATAGGGAGGGGGAAA
>ENS1-LTR#LTR/ERVL GG000032;  5 bp target site dups 0-3% subst. LTR of element with "ENS' coding region (lMech. Dev. 103 (1-2), 79-91 (2001), Nature 406 (6791), 74-78 (2000)) @cut @general @gallus
TGTAAGAGACTATTCTTTTATATCATTGACTCAAAGTTTGCTGAGGAACAAGTCCAGGCAAGTCCTGGGCAAAGGCAGAGAAATCTTTTGTCTTGAGGACACTGATGGACAGGTCCTGGCTAAGGATTGTGAAATCCTCTAAGGAGCACAGATGGACAAGGCCAGGGGCATCGAGAGAGAGATAAGCTGCCGCTAATGGCCGGGAAACGGTCTTTTTGTGTGGACTTATCTCAAGGAAAATGGCCATCTCAGGAGGTATGCACAGGACTCTTGCTCAAGCACCCAGGAATGTCACGTAGGCAGCAGAAAATGGAGGATAAAAGAGGGTCCAATAACCACAACGGTGGAAGCTGATCCTTCACCACAACCACGGCAACGGGAGAGGCTTATCTCTCACCACGACAGACTTGAGGGGTTCTCTGCCAACTGATCTCTCACCGCAACGTGTAGACGGATCTCTACGTGGAGACTGATCTCTCACCACGACACGAGCTTCCTGCCTTCCGATCCTCCTCTACGGACCGTTTGCTGACGGACTTCCCTGGGCCTGCTACCTGAGACCTGCTGCTTCCTCCCTGACCTGCATCCTCTCGCTGCCCCAGACCGGCCTCGCTGCTCCTGCCCTTCGGCCTCGGACCGTCGGAACGTCGTGCAACGGGACTGCTGCCGGATCCTGGTGGTGACTATCCCCGCTTTACGCAATTCTTGCCTCTTTCTATCTTTTCTATCGCTCGCCTTCCCTTCCCCATCACCCCAATCCTTAATAGCGTCCGTCCTCCCCTTTCCCCATCTCCCTTATTAACATTTGTAATAAACTGGTCGGACCAACATTTGAACCGCTGTTTCTTAATCTCACGCCGGGCATACATATTTCAAAGAACCTCCTCTCCCTCCTATAAATTGGAGCGAGACA
>ENS1-int#LTR/ERVL  ORF from 913-2385. This is the gag protein from ENS3. ENS1 thereby resembles MaLRs, although ENS1 is either a very recent derivative of ENS3 (<2% diverged) or ENS3 is reconstituted from an ERV and ENS1. @erv @gallus
TTTTTTATGGCGTAGTCGAAGCAGGATACCCGCCGTGAGAGTGTTGTCCTTCCAGATAATAGTCTGAAACTTTCTGCGTGTACCTCCTGGAGTTGCAAGAAGCGATACTTTTTGATAACTTAGACGTGAGCACCTCTCCAGGAAGATCGCTTCATACTCTGAAACTTTACTATTTATGTGTGTACCTCTCGAGGATGTATGAATTTTGTCTAATTGCATTTATTTAATACGTGTGTGCCTCCTCGGGAAGATCTCTCTGCATTTTGTGGTTTAAGGAACCCCTCTACGTGTGCGCCTCTTGGGGAAGTAAGATACACGTTTTTTGACTTAAAAAACGTGTGCGCCTCTCCAAGAAGTTTACTCACTTTGCTGAAAATTGTTTATGTATGCACCTCTCGAGGACGTATGAATCTTGTCTAATTGCATTTAATACGTGTGTGCCTCCTCGGGAAGACCTCTCTGCATTTTGTGACTTAAGGATCTTGCAACTTAAGTGTGAAATTTGAACCTCTTTCGTGCGTGCCTCTTGGAGAAGTGAGGAAGTGATACACGTTTTTTGACTTAAAAAACGTGTGCGCCTCTCCAAGAAGTTTATTCACTTTGTTGAANCCTAGAAAGTGTTGTTTTAGCTTAAAATTAACTGCGGGTTTTGAAACCGAAGTGTGCCTTGCTTTGGTGTGGTGTTTGCAGTTTTTTGTGTGGCTTCGCAGGGAAGTTAGGAGCGATTTTAAGTTGGTTTAGCCTCTTTGTCCTTGTGCTTTCCTCAACAAAGGGAGGCGCGATCGGAACATTTACATTTCTTTAGGTGTGGTGTGCCTCCGTGGGAGAGGCGATAAGGAGTTATTTGTACTTTTGAATAGGAGTACCTCCTCCTCTCTCAGTGTATATCTTTCTGCGTATTTAGAAATGAGCAACAGTATGGCCAGTATGAAAAGTGAAGATGTATTATTTGATCTTTTAGAAAAGCATGGTGCTCGGCCTTCTGTATCAGGGGTGGATTGGGCACGACAGAACTGGTATAATTTGCAAAGTGTTTCAGACCGTATTCGTGTTTTACAAAATGAGGCTCGTACTCGGGCCGGAAAAGGGAAATCTTTTATTTGTGCAGTACTCGGTGCTGCTTTAAAAGCAGCTGTGGAGTTCCGAGAGGAAAAGAACTCTACGGAAACCCAGACTATTCAAGCATTACAGGAATCGGTTAAAGTGACGCAAGAATTGGTAAAATCTCTGCGAAGCCAAATAACGAGTCTTGAGGATCAATTAGAAAGAGAAAAACATAATTCGGTTCTGTTGCAAACAGCTTTTAAGGAGCTGATAACGTGTAAGGACACCGGTGACACTGTTGCCCACAGTGCACCTCAAGAAAAAGTTTATCCTCAAGGGAAATTACAAGAGGTGAAGGAAAGGCTAGATAAATTAGAGGCCTCTCCAGCCCACATTCGTCCTTTGATAAAAACTGAATATACTTTCGATAACAGTGAGGATCTAGATCCTCAAATGAATGTTAAGGAAATTCCCTTTTCGGCCACTGAACTGGCCAAACTGAAAAAGGATTTCAGCCGCTCCCCAAAGGAGTCTGAAACAGAGTACGTCTGGAGAGTTAGTCTCACTGGCGGAGACCAGATCCTACTAACAGAGAAAGAAGCTGAAGGTTATTGGGGACCAGGAGTATTTTTAACCACTGGCAATAATCGTGCTCCCTGGTCCTTAACACAGAGGGCTGCCTATTGGGCAGGGGGTCTCAACCCTTTAGAAAGGGGGGACCCTCTTGCTATTACCGGAACTATCGACCAGTTAGTGGAGAATGTTCAGAAAGCTGCTTGTCTCCAAATGATGTATGATAGAAAGTTGCAGCCACATCATGAATCACCCATGATGTTACCTGTTAATCCGGAGAGACTGACACCTCTAATTAGGGGACTTCCTGAATCGTTAAAACCTATAGGTATACAACTCCAAGGAAAGATACAAGCCATGTCTCAGGGAGAGAGAACCTGGGCAGCGTTGGAGGGATCTGTAGCCCCTAACCACCAGTCAGGACCCAAAGTGTGGACTTGGGGAGAGGTTGCCCAAGAATTAATTAACTATGGAAGAAAATATGGGCCGGTGGTTTCTACCTCCAGTAAATTTGAGCCAAGAGGAGTAAGGCTTGCAGTAGCCAGCCTTGCCTCCAGGCCACCTAGCCCAAAACTTATTGGAACCAAAAAGGTTTCATCCCCAGTAAAAACGGGGACACGATGCATTGATCATAAACGCAATGGACTTTGGACTCTGGGCTGGAGAAAGGGTATTCCACGAGATTTGATGAATGGATTACCCACAGTCAGATTAGAGAAATTAGTTAACTGCTGGCCAGAACAAAAGCTCAAGGGGAGCTGATGCCTTCGCCCCCCCCCTCCCAGGTGAGCGGGAGGTGGGTGGGGGGGTGAAGGGTGGATGTTTATTAGGAAGCTCACGACTAAAGGAAACAATTTGTTAATTACTTGTTTATTTATTATTAGTGGTTATTGTCAAATGTACGGTTGTCTCTTTTCTCTCTTCTATTCATTATGTAATATTCATGTTACCACTCCTGAAGAATCACGGGGTGGTGTCTGTGGCAAGTTGCATTGTGTACTGTTGCAACTCTTATGTTTGTACCTTGTATGATTCCATGTTTTATACAAGATGTTGTATCCCCTATTTACTTTGTAACCAAACCTGAAAAATGTTTGTAATGATTGTATGAAACATTTGATTCCACAACNCCTCCCTCCTTTACCCTTGTGCTTGCTATCTTCTTCTCACCACCATGGATGCCCAGTGTCCCATTTTTAAGCAACCTTTGAGTCACGGGGTGG
>ENS1B-LTR#LTR/ERVL  GG000028 5 bp tds; 4% subst @cut  @general @gallus
TGTAAGAGATTATTCTTTTATATGATTGACTCAAAGTTTGCTGAGGAACAAGTCCAGGCAAGTCCTGGGCAAAGGTAGAGAAATCTTCTGTCTGGAGGACACTGATGGACAGGTCCTGGCTAAGGGTTGTGAAATCCTTTAAGGAGCACAGATGGACAAGGCCAGGGGCAACGAGAGAGGGATAAGCTGCTGATAATGGCCGGGAAACGGTCTTTTGTGTGGACTTATCTCGAGGAAGATGGCCATCTCAGGAGGTACGCACATGACTCTTGCTCAAGCACCCAGGGATGTCACGTAGGCAGGAAAAAANGGAGGATAAAAGAGGGTCCAACAACCATGAGGAGAGGGTTTCTGCCATCAGATCCCTCACCACGACGGACTAGGGGTTTCTGCCATCAGATCCCTCACCACGACGGACTCGAGGTTTCTGCCATCAGATCCCTCACTACGGACCGTATGCTGACGGACTTCCCTGGGCCTGCTACCTGAGACCTGCTGCTTCCTCCCGGACTTACTCTGCGGCTTCTTCCTGGACCCACCCGGTACCTGCACCCTCTCGTTGCCCAAGACCGGCCTCGCTGCTCCTGCCCTTCGGCCTCGGACCGTCGGAACGTCGTGCAACGGGACTACTGCCGGATCCTGGTGGTGACTATCCCCGCTTTACGCAATTCTTGCTTCTTTCTATCTTTTCTATCGCTCGCCTTCCCTTCCCCATCACCCCAATCCGTAATAGTGTCCGTCCTCCCCTTTCTTCATCTCCCTTATTAACATTTGTAATAAACTGGTCGGACCAACATTTGAACCGTTGTTTCTTAATCTCACGCCGGGCATACATATTTCAAAGAACCTCCTCTCCCTCCTATAAATTGGAGCGAGACA
>ENS3-int#LTR/ERVL Autonomous, currently active ERVL. ORF1 907-2367 encodes the "early response to neural induction ERNI" protein. Matches nothing, but most likely having a gag role. ORF2 2484-5555 enocdes a pol protein at least 35% identical (52% similar) to that of ERVL. Surprisingly, the ENV protein (ORF 5781-7241) is most siilar to that of class I ERVs in mammals, like HERVH48 and Harlequin. First 1354 bp are 'borrowed' from ENS1, as no full element is available and the sequence is identical to ENS1 where they overlap elsewhere. ENS3 named and described by Acloque,H., Risson,V., Birot,A.M., Kunita,R., Pain,B. and  Samarut,J. Identification of a new gene family specifically expressed in chicken embryonic stem cells and early embryo. Mech. Dev. 103 (1-2), 79-91 (2001). @erv @gallus
TTTTTTATGGCGTAGTCGAAGCAGGATACCCGCCGTGAGAGTGTTGTCCTTCCAGATAATAGTCTGAAACTTTCTGCGTGTACCTCCTGGAGTTGCAAGAAGCGATACTTTTTGATAACTTAGACGTGAGCACCTCTCCAGGAAGATCGCTTCATACTCTGAAACTTTACTATTTATGTGTGTACCTCTCGAGGATGTATGAATTTTGTCTAATTGCATTTATTTAATACGTGTGTGCCTCCTCGGGAAGATCTCTCTGCATTTTGTGGTTTAAGGAACCCCTCTACGTGTGCGCCTCTTGGGGAAGTAAGATACACGTTTTTTGACTTAAAAAACGTGTGCGCCTCTCCAAGAAGTTTACTCACTTTGCTGAAAATTGTTTATGTATGCACCTCTCGAGGACGTATGAATCTTGTCTAATTGCATTTAATACGTGTGTGCCTCCTCGGGAAGACCTCTCTGCATTTTGTGACTTAAGGATCTTGCAACTTAAGTGTGAAATTTGAACCTCTTTCGTGCGTGCCTCTTGGAGAAGTGAGGAAGTGATACACGTTTTTTGACTTAAAAAACGTGTGCGCCTCTCCAAGAAGTTTATTCACTTTGTTGAANCCTAGAAAGTGTTGTTTTAGCTTAAAATTAACTGCGGGTTTTGAAACCGAAGTGTGCCTTGCTTTGGTGTGGTGTTTGCAGTTTTTTGTGTGGCTTCGCAGGGAAGTTAGGAGCGATTTTAAGTTGGTTTAGCCTCTTTGTCCTTGTGCTTTCCTCAACAAAGGGAGGCGCGATCGGAACATTTACATTTCTTTAGGTGTGGTGTGCCTCCGTGGGAGAGGCGATAAGGAGTTATTTGTACTTTTGAATAGGAGTACCTCCTCCTCTCTCAGTGTATATCTTTCTGCGTATTTAGAAATGAGCAACAGTATGGCCAGTATGAAAAGTGAAGATGTATTATTTGATCTTTTAGAAAAGCATGGTGCTCGGCCTTCTGTATCAGGGGTGGATTGGGCACGACAGAACTGGTATAATTTGCAAAGTGTTTCAGACCGTATTCGTGTTTTACAAAATGAGGCTCGTACTCGGGCCGGAAAAGGGAAATCTTTTATTTGTGCAGTACTCGGTGCTGCTTTAAAAGCAGCTGTGGAGTTCCGAGAGGAAAAGAACTCTACGGAAACCCAGACTATTCAAGCATTACAGGAATCGGTTAAAGTGACGCAAGAATTGGTAAAATCTCTGCGAAGCCAAATAACGAGTCTTGAGGATCAATTAGAAAGAGAAAAACATAATTCGGTTCTGTTGCAAACAGCTTTTAAGGAGCTGATAACGTGTAAGGACACCGGTGACACTGTTGCCCACAGTGCACCTCAAGAAAAAGTTTATCCTCAAGGGAAATTACAAGAGGTCAATGAAAGGCTAGATAAATTAGAGGCCTCTCCAGCCCACATTTTTCCTTTGATAAAAACTGAATATACTTACGATAATAGTGAGGATCTAGATCCTCAAATGAATGTTAAGGATATTCCCTTTTCAGCCACTGAACTGGCCAAACTGAAAAAGGATTTCAGTCGCTCCCCAAAGGAGTCTGAAACAGAGTACGTCTGGAGAGTTAGTCTCACTGGCGGAGACCAGATCCTACTAACAGAGAAAGAAGCTGAGGGTTATTGGGGACCAGGAGTATTTTTAACCACTGGCAATAATCGTGCTCCCTGGTCCTTAACACAGAGGGCTGCCTATTGGGCAGGGGGTCTCAACCCTTTAGAAAGGGGGGACCCTCTTGCTATTACCGGAACTATCGACCAGTTAGTGGAGAATGTTCAGAAAGCTGCTTGTCTCCAAATGATGTATGATAGAAAGTTGCAGCTACATCATGAATCACCCATGATGTTACCTGTTAATCCGGAGAGACTGACACCTCTAATTAGGGGACTTCCTGAATCGCTAAAACCTATAGGTATACAACTCCAAGGAAAGATACAAGCCATGTCTCAGGGAGAGAGAACCTGGGCAGCGTTGGAGGGATCTGTAGCCCCTAACCACCAGTCAGGATCCAAAGTGTGGACTTGGGGAGAGGTTGCCCAAGAATTAATTAACTATGGAAGAAAATATGGGCCGGTGGTTTCTACCTCCAGTAAATTTGAGCCAAGAGGAGTAAGGCTTGCAGTAGCCAGCCTTGCCTCCAGGCCACCTAGCCCAAAACTTAATGAAATCAAAAAGATTTCATCCCCGGTAAAAACGGGTAGACGGAGCATTGATCATAAACGCAGTGGACTTTGGGCTCTGGGCTGGAAAAAGGGTATTCCACGACATTTGATGGATGGATTAACAACAGATAGGCTTGAGATGCTTGTGACTGAATGCCCTTACAAAGCTTGAAGAAAGGCAAAGTCCTAGGTTCCTAGTGCCCCCCCCGCAACACCAGAGGAGCTACTGCAATCATCGGGAAACTAATTCCTTCACCCCTTTCAAGTGAGCGGGGGGGTGAAGGGTGGATGTTTATTAGGAAGCTCACGACTAAAGGAAACGATCTGTTAATTACTTGCATTGTCGAACCTAAATTAGTCCCCATAACGTTTCTGGTGGATACAGGAGCACAGATTTCAGCTATCAAAAGGGAGGATGCTGACCGTGCTGGTGTAACCTTATCTCGCAGAAAAATATTCGTGGCAGATGCTATGGGCGGTGTACATTCACAGAACATGGCAACAGTAAGGCTAAGGTTACCTGGGGAAGAGCGCTCTCAGGATGTCCCCATGGTTGTGGGAACTCTCCCGCTTAATTTGTTAGGACTTGATATGTTGAAGGGCAAAAGTTGGACAGATGATAAAGGGAGAGAGTGGATGTTTGGTGTCCCTTCCCTAAATATCCGTTTATTACAGACAGCACCACCACTCCCACCCTCCAATTTGACCTGTGTTAAACCTTACCCTTTACCTCTAGGAGCACGTAGTGGTATTAGCCCAGTGCTGGCAGAATTAAAAGAACAGGGAATTGTGATACCCACCCATTCCCCTTTTAATTCCCCTGTGTGGCCTGTTAGGAAACCAAATGGCAAATGGAGATTGACTATTGATTATCGTAGACTGAATGCTAACACTGGACCACTAACTGCAGCAGTGCCTAACATTTTTGAATTAATAGCAGCTATCCAAGAGCAAGCTCACCCTTTTATGGCCACCATTGATGTTAAAGATATGTTCTTTATGGTTCCCCTACATCCCGATGATCAACTCCGTTTTGCTTTTACATGGGAAGGCCAGCAGTATACCTTTACCCGCCTTCCTCAGGGGTTCAAGCACTCCCCAACTTTGGCTCATTATGCCCTGGCAAAAGAACTTGAACAGATCCCCTTGGAGGAGGGGGTTAGGCTTTATCAATACATTGATGATATCCTCATAGGAGGTGATCATTTGACACCAGTAAAAATAATGCATGACAAAATAATCAAACGACTAGAGGAGCTGGGATTGACGATTCCCCCAGACAAAATCCAGTCCCCAGCTGCTGAGGTAAAATTCTTGGGCATCTGGTGGAAGGGTGGTATGGCCTGCATTCCACAGGATACCCTCTCAGCTTTAGACCAACTCAAAATGCCAGAGAATAAGAAGGAATTACAGCATGCTCTTGGACTTTTAGTGTTCTGGAGAAAACACATCCCTGATTTTTCTATTATTGCCCGTCCATTGTATGACTTGTTGCGAAAGGGAGTATCATGGGGATGGACCCCTGTTCATGAAGAAGCCTTGCAGCTTCTAATCTTTGAAGCTATCACCCACCAGTCCTTAGGTCCTATCCATCCCTCTGACCCTGTACAGATAGAATGGGGATTTGCTCACTCAGGATTGTCTATACATCTTTGGCAAAAGGGCCCAGAAGGTCCCATTAGACCTATTGGATTCTATTCCCGCAGCTTTAAAGACGCAGAGAAACGATACTCTCAATTGGAGAAGGGGCTATTTGTTGTTAGCCTAGCCCTGCGAGAAGCTGAGCGAACTATACGACAGCAGCCCATAATACTGAGAGGCCCATTTAAGGTTATCAAGTCTGTGATGTCTGGCACCTCTCCCCCTGACGGGGTGGCACAGAGAGCTTCTGTCCGAAAGTGGTATGCTCAAATTGAACATTATTGTAATATCTTTAAAGTCACAGAGGGTGCCCCGAAAACACTTGCCATCCAGGATGATATTCTGTCTACCACTGATACTGACCTTCCCTCTGTTGTCCAGGTTGCTCCCCCATATTCAGACCAGTTACAAAATGTTTGGTTCACAGATGCCTCCTCCAAGCGTGAAGGTAAAGTATGGAAGTATTGGGCAGTGGCCCTACAGATAGGGACTGACCTCACTATTATCACTGAGGGGGAGGGGAGTGCTCAGGTTGGGGAGCTAGTAGCAGTATGGAGTGTGTTCCAACACGAATCAGAGTCCACTACACGTGTGCATATTTATACTGACTCGTATGCCGTCTTCAAAGGCTGCACAGAGTGGCTTCCCTTTTGGGAGAAAAATAACTGGGAAGTTAACCGTATCCCAGTGTGGCAAAAGGAAAAATGGCAGGACATTATCTCTATTGCTAAAAAGGGACAATTTTCTGTTGCATGGGTTGCAGCACACCAGGAGGATGGGACCCCTGTTAGTCATTGGAACAACAGAGCAGATGAACTTGCTAGGATTGCTCCACTGAGACAAGGAGAACCGGACAGTGACAACTGGGAGAGACTTGTGGAGTGGTTGCATGTAAAAAGAGGGCATACAGGTGCTCTTGATCTCTACCGTGAGACCCAAGCCCGTGGCTGGCCTGTTACCAGGGAACAGTGCCGCACTTGCATTTCTGCTTGCGACCTATGCCGCACCCGTCTGGGCCAACACCCCTTACAGGATGCTCCTCTCCATTTAAGGGAGGGAAAGCACCTATGGGAAACATGGCAGATTGATTACATTGGCCCCTTCCGTAAATCTGAAGGTAAACAGTATGTGCTAGTAGGTGTAGAAATAATCTCTGGCCTACTTCAGGCTGAATCTTGCCCTCGAGCAACAGGGGAAAACACTGTAAAGGCACTAAAGAAATGGTTTAGCATTCTTCCAAAACCCACTTCCATCCAATCAGATAACGGCTCTCATTTCACCTCAGGGGTAGTTCAAGAATGGGCCAGGGAGGAAGGCATTCATTGGATCTTTCACACCCCCTACTACCCGCAGGCTAATGGCATTGTGGAACGATCCAATGGCCTCCTTAAGAAATTTCTGAAACCGGAAAAAACCAATTGGTCCACCCGCACCTCTGATGCGGTCAGAAGGGTAAATGATCGCTGGGGAATTAATGGCTGTCCTCGATTCAACGCTTTCTACCCCAAGGCCCCGCCACTTCTCCCAATTACACTTAATCCAGATAAGTTAGAAGAACCTTCTTATTCCCCTGGCCAACCTGTGTTGGTCGACTTGCCTCATGTAGGGCCAGTACCCCTGACTCTAATGGAATCTCTTAACAAATATACTTGGAGGGCCAAGGACGCCCGGGAAAAGGAATACAAGATTAACGCTCGCTGGATTATTCCCTCATTTTAACCATATTAACAAAGCCCAAGAGGGCAAGTCGATGTTTTGTTTTGTTTTACAGAAGACCTTCGTGGGACTCTAGTTGAACACAGTAGCAGCAGATCTTAATTATTGGTGTTTTGGTGATTATCTATGCAACACTCGGGTAAAACGTTATTTTTGTTAATCTGGGCTGTGACCTCTGTAACAGTCAGTCATCCCCTTACAGACGCTGGGGGTGGGGAAAATGGTATAAAAAACTCTTTTTTTTCAACTGGCTGAGCAAGTAGCAAATGTCTATAACTTAACTAATTGTTGGGTCTGTGGAGGACCCATGGGACTTGAAACTTGGCCCTGGGTGTCCACCCCTATTGCCCCTAAATGGCTTGCAAGCAACTACAGTGAAGCTAACCCCAGTACCCACTGGGAAGATAAGAATATGTCTCCATGGCCAGTACAATATCCTGCTATGGGAATGTATTGTCTGAATCGTACACAACCTGGTGGTATCTATGTTGGGACTAGCAATTGTACTTGGGTTTATCGTAAAGGGACTCATGGAATAGTACCACAGATAAGGGATGATCAGTGGGGATGGTACAATCAGTCGGGAATGAGACACAGGTTTTCTCATTTTTGGTCCTCCACCAACAACACTCTGTTTACTGAAGCTGGAGGGAAGAAATGTATATGGAGGCCTGATGCGGGAGCTTGGAAATGTAAGTGGTGTAAGGATGAAAGTATAACTGGTAACGGCTGGAACTGCAATGTGTTAGGACATCCTTTTGGACCTCTCAACACCACATACTTTCAAGCTAAGGAACATGTAAATGAATTAACCAACAAATGGAATGGACCTTTCGAAAATGGCTCAGTAGCGTTAAAGGGACATTACTGGATTTGTGGTCATTATGCGTATAAACGACTACCTGCAAATTGGACTGGGGTATGTTATGTTGGAGTAATCCGCCCGATGTTCTTTTTGCTCCCAGGAAAGGATGGCAGTGAATTAGGTGTCAGAGTATATGATGATCTGAACCGACACAGGAGGTCTATTGACACTTCCCTAACACGTGGTAGTGGCCAAACTTGGGGCAAAGATGACTGGCCCCCTCAACGTATAATCAAACACTACGGGCCAGCTACCTGGAACCCCAATGAATGGATTAGTGGTGCTCGAGAGCCCATCTATAACCTAAACCGTATTATCCGATTACAAGCCATCCTTGAAATCATTACTAATGAAACAGCCTATGCCCTTGATCTCCTTGCAGATCAAGCCTCACAGATGCGGGCGGCAATACTCCAGCATCGCATTGTTCTGGACTACCTGTTAGCTGAAGAAGGGGGTGTCTGTGGCAAATTAAATGATTCTACTTGCTGTCTAAAAATTGATGATAATGGTAAAGTAGTTAAACAAATTGCTCAAGGTATACGGAAAATAGCCCATGTTCCCGTCCAAACATGGAAAAGCCCAGACCTCGATCTCTTTTCCTGGCTCCCAGGTGGCCCATGGGTAAAACGCATCTTGTTTTATTTATTGTGTGCTGTTGTAACTCTCATGTTTGTCCCTTGCATGATACCATGTTTCATTCAACTGATACAGCGTGTTGTTTCTTCTATGTACTTTGTAACCTCCTCTACTGAGGGGGATGTCAAGCACATCAGGGGAACGTTTGTAACCAAGACTGAGAAATCTTTTGTAACGATTGTATAAAACATTTCATTCCCTGTCCCCTCCTTCCTTTACCCTTATGCTTGCTATCTTTTTCTCACCATCATGGATGCCCAGTGTCCCATTTTTAAGCAACCTTTGAGTCACGGGGTGG
>GGERVL18-LTR#LTR/ERVL around 10% divergence; first 250 bp 70-80% similar to GGLTR4A and B  @cut @general @gallus
TGTATGGGAACTGTTGAATCACGGCCTGAACCTCTGATTGATCACCTGAGGCAAGCACTGAGTCAGCCGCGGGAGCACAGGTGAAGGCAATTCACCTGTGTGACCGGAAGGGGTGGAGCCTGGCTCCACCTCTCCTAGACCCCATTTAAGGGCTGACTGCCACTGAGGAAGGATCTCTTTCTGGAGATCGCTCCTCTTGGAGTTTTTTCTGTGAGCCTAGGACACGGGTGAGCATTTTCATTTATTTCTGATTATCCCTTTCCAACGTGATAATCTTTCTAGCTGTACGATCTGTGGATACCAGCCTAACCACACCACTCTGTATATTTGTTGATTATACA
>GGERVL18#LTR/ERVL GG000165, GG000008 Two ORFs, gag from 39-1616  and pol from 1712-4993 (or 1529-4993 if polyprotein created by frameshift). Matches the primate element HERVL18 by 70% at the DNA level over the length of ORF2. gag product also closest to that of HERVL18 and RMER15-int and quite different from (H/M)ERVL @erv @gallus
CTTGGCGAGGCAGGCCAAATATACTAAAATATATATATATGTNTGTGTCTTTTCTNTGGAATNTCTATAAATGGGTCAGGGGGGAGAACATTACCCCCCTAGACAAAATGATCCCTGGGCAGATCCCAGGATTTCTGGGATCCCCCTATTATGAACTAGCAACCATNATTGAAAAATGGGGTCCCCTGCGNGTTATGGGAAATATCTCCCCATTCCGCATGGCGGACTATTTTCANGGNCTAAGCAAAGATATACTAATTACAAAAGAACGGCAGTTAGCTGCCTCTACGGTGGCATGGCCACTGTTAAATGCTTTAAACCAGGCTGAAATGAGGGCCAATACCTTAGAAAATGAAAACCAGCTATTGNGAGACCGCACTGAGAAATTAGAGCAAGAACTTAGTATATTGACGGGGAAAAAAACAACTTTGCATTTTCCGATAGGNCAGGTCCGTAATATTTCAATAGATAATGACCAGATTCCTGAATCAACGGACCTGGTTGATCAGGAAAATAAAAATTCTAAATCGGATCTNGANGCTCCGCTTGCGACGGATCCCTTGGAGATCCGTCCTATTATAACTCAAAAAACAAAAAAGATACAAGATAGACCAGCAGGGGTGCCCCCTGATCAGTGGCCCCCTGCCCAAACTCACTTACATGTAACGGCCCGNCCATACACGGCAACNGAATTAATGGACCTGGTACAACGGTTCCGGCAGAAGCCNAGGGAAAGTGTACCAACTTGGCTATTAAGATTATGGGACTCGGGGGCAGAAAGTGTCGTGGTTAACGGGCCAGAAATATCTAAATTGGCCACCATGACTGTGCACCCTGCCCTTAGGCAGAGATTATACGCNGGCGTCCAATATACCAATGAAAACCATTCTATAATAGATTGGTTGATGGCGGCATGCCGTATGGTATGGCCNAATAAATCAGATATACCATTACATACAGGNTTGTGGTCCTCCATGGAGGACCTTCAAAATTACATTCGTGAACTGGGCATAAGAGAAGCAATATATGAAGACNCATTTGANAGCCCAGATATGGTNAGATTTTCAGCGGGNATGAGAGACTTGATCTTGCAGCAGGCCCCTTCCCATCTATATGGGACCTTAGTTTCTATACTGAACCCCCTGGTGGCCTCAGAGTCNGTGGTCCAACAGGCTGCCCAACTAGTGGCTGATCTGGGGGAGACAGAGCGCCTGCGGACCAGGCGCAATATTCGAACANTGGAAGAAGCAGAGGTCCTNCCAGTAACTAAAACTAGGAGGCCAGCCGTACGAACTCCTCAATCGGGACCCATACGGGTNTCCCGAAAGCAAATGTTTAATGACCTAATCCGGGCTGGGGTCCAATTTGCNAAAATTGATCGCCAGCCCAATCATGTCCTCCTCCAGCTNTGGAAACAGCTGAAGGACAATCAAAAATTTCAAAATTACCCCAAAAAACCTAGGGTAAGAATTATNGACAGANTACCAACGACAACATGGAACTTAGAAGATTTTATAGTCCCTAGTAGGAAAAAGAAGCCTCCTCAGGTGTCTCGGGCCACAATGCCCGAGCCACCNGAGGCAAAAGACTTAGCCATAGCACAGTTTATGGCGTGACAAGGGATGCTAGTCCCCCTAGGGCCTCCAGATGGGACCGGAGGCCCTATGTAGAATTGACGATTTTTTGGTCCCGAAAGAATATTCAGAGAGTTATGGCATTGGTTGACACAGGNGCGGAAACATCAATAATTTATGGAGATCCGACTAAATTCGATGGCGATAGAGTGATGATTGGTGGNTTTGGGGGACAGACCATTCCGGTCACCCAAACGTGGTTGAAACTGGGGGTTGGGCGTCTCCCACCCCGGGAGTATAAGGTGTCTATTGCCCCAGTCCAAGAGTACATCCTGGGCATAGATATTTTATGGGGTCTGGCTCTCCAGACGACTGTGGGAGAGTTCAGACTTCGACAAAGGTGCATTAGTGTCCGGGCGGTGCAGGCAATATTGAGAGGCCATGCGAAGCATGAGCCTATTTGCCTGCCGAAACCGCGCCGGATTACTAATGTNAGACAGTATAGACTCCCGGGTGGGCAAGATGAAATATCAAGAACGGTGCAGGAATTAGAAAAAGTNGGCATTATAAGACCTGCACATAGCCCATATAATTCCCCCATATGGCCAGTGCGAAAGTCGGATGGAACATGGAGAATGACGGTGGATTATAGAGAATTAAATAAGGTCACGCCGCCTATTCATGCAGCCGTACCCAATATTGCCTCCCTAATGGACACATTGAGTAGGGAGATAAAAACCTACCATTGTGTCCTAGATTTGGCAAATGCGTTCTTCAGTATTCCAATTGCTGAAGAATCGCAAGATCAGTTTGCGTTTACATGGGGAGGCAGGCAGTGGACCTTTCAGGTCCTGCCACAGGGGTACGTGCATTCGCCAACATATTGCCATAATCTAGTGGCGCGTGACCTGGCTAATTGGAGAAAACCTGATAATGTTAACTTGTATCATTATATTGATGATCTCCTGTTGACATCTGACTCACTGGAGGCGGTAGGACAGGCAGCAGATTCATTAACTACCTATCTGCAGGAAAGAGGATGGGCTATAAATCCTCAGAAGGTGCAAGGTCCGGGCCTGTCCGTAAAATTCCTGGGGGTAGTTTGGTCAGGAAAGACCAAAGTACTACCCAGTGCTGTAATAGATAAGGTTCAGGCATTCCCAGTCCCTACAACACCAAAGCAGCTGCAGGAGTTTTTAGGTATATTGGGATACTGGCGCTCCTTTATACCTCATTTAGCGCAGCTGCTGAGGCCACTGTACAGACTCACGAAAAAGGGGCAGCTATGGGACTGGGGGAGAACGGAACAGGACGCTTTCCAACAGGCAAAACTGGCAGTTAAACAAGCCCAGGCATTGGGTATATTTGATCCTACCCTCCCAGCCGAGTTGGACGTTCATGTCACTCAGGATGGCTTTGGCTGGGGCCTGTGGCAACGCCAGAGTTCTGTTCGGACCCCCATTGGATTCTGGTCTCAGGTCTGGCACGGAGCAGAAGAAAGATATAGTATGATTGAAAAACAGTTATTGGCTGCCTACTCCGCATTACAGGCGGTAGAGCCGATAACCCAAACGGCTGAAATCATAGTTAAGACCACCCTGCCGATTCAGGGGTGGGTGAAAGATCTGACCCACCTTCCTAAGACGGGGGTGGCCCAAGCACAAACGGTGGCACGATGGGTCGCCTATCTCAGCCAGAGGAGTAGTCTGTCTTCATCACCACTAAAAGAAGAACTTCAGAAGATCCTAGGCCCAGTGACGTATCACAGTGATGCACCAAAAGAAACATTGGTCGCTCCACCAGAGAAGAGTCCCGTTCAGGAGGGGAAATATCCTATTCCTGAAGATGCCTGGTACACAGATGGGTCCAGCAAGGGCAACCCGAGCAAGTGGAGAGCGATAGCATACCATCCCTCCACCGAGACAATCTGGTTTGACGAGGGGGATGGTCAGAGCAGCCAATGGGCAGAACTGCGAGCCGTGTGGATGGTTATAACCAAGGAACCCGGTGACGGTATCCTGAACATCTGCACAGATAGTTGGGCTGTGTACCGGGGGCTCACTCTTTGGATTGCACAGTGGGCCACCCAGGAATGGACTATCCACGCCCGACCAATCTGGGGCAAAGATATGTGGTTAGACATATGGAATGCAGTTAAACACAGGACTGTACGTGTCTACCACGTTTCTGGTCACCAACCCCTACAGTCACCGGGAAATGATGAAGCCGACACACTGGCCCGAGTTCGATGGATTGAGAATTCACCATCTGAGAACATCGCCCGCTGGTTACATCAGAAGCTACGGCATGCTGGACAAAAGACAATGTGGGCAGCTGCTAAAGCATGGGGGCTGCCCATACAGCTATCTGACATCGCCCAGGCATGCCGAGACTGCGACGCTTGCTCCAAGATGAGACCGAGATCGTTGCCCGAAACAACAGCCCATCTTGCTAGAGGACACAATCCTCTCCAGCGATGGCAGGTTGATTACATTGGGCCCCTCCCTCGGTCTGAGGGGGCGAGATATGCCCTGACCTGCGTCGACACTGCAAGTGGGCTACTGCAGGCCTATCCAGTACCGAAAGCAAACCAGGCATATACCATCAAGGCACTTACCAAACTGATGTCTGCCTACGGGACACCTCAAGTCATCGAGAGCGACCAAGGGACTCATTTTACTGGTGCAATGATACAACGCTGGGCAGAAGAAAACAACATTGAATGGCGATTCCACCTGCCATATAATCCGACGGGGGCAGGCCTCATTGAACGTTATAACGGTATTCTTAAGGCTGCCCTGAAGACAGACTCCCAGTCCCTGCAGGGGTGGACAAAGAGACTCTATGAAACCCTGCGGGACCTGAATGAAAGACCTNGAGACGGCAGACCCAGTGCCCTGAAAATGCTACAGACAACATGGGCCTCCCCGCTTAGGATCCAAATTACGGGCACTGATAATCAGGTAAGACCCCAGATTGGCAATGAAAATAATCTTCTGCTCCCTGCCCCTGAGAATCTAGANCCAGGTACCCATAGAATAAAATGGCCTTGGAAGGTGCAGGTAGGACCAAAGTGGTGTGGCCTACTTGCACCTTGGGGGAGATTATTGGAGGTGGGAGGCTCGGTAGTCCCTCCGGTAATAGGTACATGGCCTACGGACATTGTGGTCAACACTCCGGTCTTCATTGCTAAAGGGACCCCCATCATGTCCCTGTGGCAGATCAGGACACCCCCTTTGGTGCCTGATATAGTTATGCAGCCGCAGACATCTGGCCAGAAGGTATGGTACAGGCGGCCGGGGCATGCCCCAGTACAAGCCGAAGTGTTGACCCAGGATAGAAATACGGCCTGTATCTTGCCCTGGAGGGCAGACCTTCCCCTCCTGGTACCCCTGAAACATCTGTATTACTCCCCGTGAGTCTTTGAGCCTCTAGGATCACCGGAAGGAACGAAATGCCATCAAAGCGTTCCAGTGTTGCTGTGAGATCACGTGCGACACCCGGTGATGGTCTACATGGGACTGATGGAGCATAGGATGGACCTGCACCNCACGACTACATGCCTCCAGTAACACCATCGAGCACTGGCCCATGAAAGAACATGAACTTTCACCATACCGATCATCACTCGTCTTAAATTGTGTCAACATACATCGCGACGGGAAATTGTATAAGCGTCGCGATGTGTCGGATCTCTGTATTAGGGAAGACTCACCCTTTAGTTAACTCAATCATTGGTTCATGCCGTGAAGGGGTGGAG
>GGERVL-A#LTR/ERVL Seen with GGLTR3A, -B1/3, -C, and -F1/2 LTRs. ORF1: 317-2677, ORF2: 2810-5863. The gag protein partially matches that of ERVL (44% similarity only), as well as that of MLT1H. The pol protein is 55% similar (36% identical) to that of ERVL in mesozoic mammals. From pos 686-1175 ORF1 contains a tandem repeat of a 21 bp unit AGAGAGAGTCTCCGAGCCGAG that slowly morphs into CGAGACACCCTCCAGTCCGAA, resulting in poly-QSERDTL string in the protein.  GG000227, GG000232 (pars), GG000221, GG000003, GG000092, GG000091, GG000097, GG000098, GG000025  @erv @gallus
TTCTTGGTGGAGAATGCGGGCAAAAGCTGCTTTTTAGCTTTTTAGAACGAATCTCTCTCTGCTCTCGGAGAGCTTCGTTGGGAAAGTTTATCTCTTTCGCAGGTGCTCACTGAAAACTTGACCTTGAAAGTCCAGGCGGACTGCCAATATTCTGGGATATTTTGTAAACTTTGAGCACTGCTATCTTGCTTCNGTAAAGAGAAAGGAAAAAAAAANGATTCTGCTTTCTCTTTTANACCNGTTTGCAGAGGGAGCTGCTAATTTTACAGAACTTGTGATTTTTAAGCAGGCTCCCAGTCTCTCCTTCGAATCCTTTATGNATTTTTTGAATGCTCATCTGATCACGTTGTTAATCTCCCTGAATGCACTGTTCGTCATTGTAATTATTTCACTCAGTATCTGTATTTATNATATTCTGAGGAAGCCTTCCCCAAAGCCAGAGAATACTGAGTGGCAGGGAGTGTGGAGAGGCTTGGGAGAGACTTTAGAGAGATGGACATCCTCGGTGTCATGGAACTTTACTCCTGAACACCTGAAAGATCCTGAGAGCCTAAACAGATATTTGAGACAGGGATGTTGTGGCTCAGGCAGATCTGAGGAGGCACAAATGATTTGGGGCCTGGCTAATGCTTATCGGGCCTTATTCAATACTATCCCAGAGAGGGAGAGAGTTTCTGAAATTGAGAGAGAGAGTCTCCGNGCCGAAAGAGAGNGTCTCNGAGCTGAGAGAGAGAGTCTCCAAGCCGAGAAAGAGAATCTCCAGNCTGAGAGAGAGAGTCTCCGAGCCGAGAGGGAGAGTCTCCGGGCTGAGAGAGAGANTCTCCAAGCCGAGAGAGAGGACCTCCAATCTGAGCGAGANAGTCTCCGGNCCGAGCGAGANANCCTCCAATCTGAGNGAGACACCCTCCAATCCGAGAGAGACACCCTCCAATCCGAGCGAGACNNCCTCCAATCCGAGCGAGACGNCCTCCGATCTGAGCGAGACACCCTCCAGTCCGAGCGAGACACCCTCCAATCCGAGCGAGACAGCCTCCAANCCGAGCGAGACGCCCTCCAATCCGAACGAGACAGCCTCCAATCCGAACGAGACANCCTCCAATCCGAACGAGACACCCTCCAATCCGAACGAGACACCCTCCAGTCCGAGNGGGACACCCTCCAGTCCGAACGGGACGTACTCCGAACCGAGCGAGATGCCCTCCAGCACGCAAAATTCAGTCTCCAAACTGAANTAACCAAAATTCAGTCTCATCGAGNCATNCTCNAATCTGAACTAAACACCCTCATAATCGAACAAGACAGACTCCGAGCCGAGCTGGAGAGTGAGAGCATCGGAACTGACCAACCTGATCAACCGCAGGAGGCACCAGAATCGATGTCAGTTGCCCCTGTAAGAGGACGGAAAACGAAACGAATCTCAACTCACTTAGAACAGAAGAAAGAGGAGGAGGAGAAAGTAGAGGAAGCAGACACTGTAAGAGAAGAGGAGGAAAGAGGTCCAGAGGAGCGGCTCCAAGATCCAGGGGAAGCGCCCCTGAGTCCAGGGGAGGGGCCCTCAATAAGATCGCGGTCACCAACGCCCAGGAGGGCAACAAGAAGTCCTGAAAGAGTAGGAGGTGAGCAAGACATCGTNACCATTACTGATCGATCTCTGAAAATGAATGAAATTCGAGGTCTGAGAAAAGACTTTTCACGCCACCCAAATGAGCCTATTGTCACCTGGTTACTTCGATGTTGGGACAATGGGGCCAACAGTGTGTNGCTAGATAGTAGAGAAGCTCGCCAACTGGGTGGCATTGCTAGGGACTCAGCCATTGACAGAGGTATTAGTACATGCCAGAACGAGGCCTTCACCCTCTGGAAGCGGATGCTGTTAGCCGTAAAAGAAAGATACCCCTTCAAAGATGATCTGATGCCTGAGAAAAAGAAATGGACTGATATGGAAAAAGGCATCCGTTATTTGAGAGAATGCGCCGTGGTGGAAATGTTACATGGCCCCACTTTCATTCCTGACGAGCCAGACCAAGAGCATGATCCTGAGAGAGTCAGGTGTACACCAAATATGTGGCGTATATTCACAAAGACTGCACCAGAAAGGTATGCCAGTACATTTGCAGCAATGTATGGCAGAGGGGAAAGAAGACCCCTTATAAATGAACTGATTAATAAACTTCAAGACTTTGAGTTACATTTAACCCCTCTACGAGCTTGTGTTTCAGCCATTACAAAAGTAGCTGAAAAACTGGACAGAATGGAGAGCAANCAAGAAGATATAATAGACGAACTGTCTACCGTGCTTNATGCTGATGGATCCATGGTGGTATCAGATACATCTGACGGGGACCAGGATTCCCAAAACAGCCTACTGGAGGGGCTGATCAAATTGGTTTCCTCCCAACCTGCATCATCCAACGTCTCAGCTATCAAAAGAAGACGTCCTCCTGCTCGAGCAAGTGACAACAGTAAGACTATGTCGCGTNTTGCCTTGTGGCGTTACCTACGTGACCATGGAGAAGATATGAAGAAGTGGCATAAAAAACCCACTCCTGCACTTCAAGCACGGGTAAAAGAATTACAAGACAGATCAACCACCAAGGTGAACTCCTCCAAAAAGGTGATTGCTCCAGTTGCTGCGGGACACGGCAATAGCCGTAAGAACGACAGAGGTAACAAATAGAGGGGCCCTGCCCCCAGCCAGGGGGGGGAAAGGGATAATAGAGTGTATTGGACTGTGTGGATTAGATGGCCTGGCACATCAGAACCACAGAAATATAAGGCACTGGTGGACACTGGTGCACAGTGCACTCTAATGCCCTCGAGTCACCAAGGGACAGAATCAATTTATATTCATGGGGTGACTGGGGGTTCCCAAGAGTTGACTATGTTGGAGGCCGAAATAAGCCTCACTGGTAAAGACTGGCAAAAGCACCCTATTGTGACTGGCCCAGGGGCTCCATGTATACTTGGTATTGATTACCTCAGAAGGGGATATTTTAAGGATCCCAAGGGGTATCGATGGGCCTTTGGAATAGCTGCTGTAGACACAGAAGGTGTTAAGCAGTTGTCTGTNTTGCCTGGCCTATCAGAAGATCCGTCTGTTGTGGGGTTGCTACGAGTGAAAGAGCAACAGGTACCGATTGCTACAAAAACGGTGCACAGACGGCAGTACCGCACCAACAGGGATTCCTTGCTCCCCATTCATAAGTTGATTCGTCAACTAGAGAGTCAGGGAGTGATCAGCAAAACTCACTCACCTTTTAACAGCCCCATATGGCCAGTGCGTAAAGCCAGTGGAGAATGGAGGCTGACGGTAGACTACCGCGGCCTGAATGAAGTCACACCCCCACTGAGTGCTGCTGTGCCGGACATGCTAGAACTCCAGTATGAACTGGAGTCAAAAGCAGCCAAGTGGTATGCCACCACTGACATTGCTAATGCCTTCTTTTCCATTCCTTTGGCCACGGAATGTAGGCCACAGTTTGCTTTCACCTGGAGGGGCGTTCAGTATACCTGGAATCGTTTGCCCCAGGGGTGGAAACACAGCCCAACNATTTGCCATGGGTTGATCCAAGCTGCACTGGAACAGGGNGGTGCTCCTGAGCACTTACAGTACATTGATGACATTATTGTGTGGGGCAACACAGCAAGGGAAGTTTTTGAGAAAGGAGAGCAAATAATCCAGATCCTTCTGCGTGCTGGTTTCGCTATTAAGCGAAGCAAAGTGAAAGGACCTGCNCAGGAGATTCAGTTCCTAGGTATAAAGTGGCAAGATGGACGTCGTCACATCCCAACGGATGTGGTCGACAAAATCACTGCCATGTCTCCGCCCACTAATAAGAAAGAGACACAGTCTTTTCTGGGCGTAGTGGGCTTTTGGAGAATGCATGTTCCAAACTATAGCCTCATTGTAAGCCCCCTTTATCAGGTGACGCGGAAGAAGAATGATTTTGCGTGGGGTCCTGAACAGCAGCAGGCTTTTGAGCAGATTAAACAGGAGATAGCCCGTGCCGTGGCCCTGGGGCCAGTACGGACGGGACAGGATGTAAAGAACATCCTCTACACTGCTGCTGGAGAGAAAGGTCCCACCTGGAGTTTGTGGCAAAGAGCCTCAGGAGAGACCCGAGGCCGACCCCTGGGATTCTGGAGTCGAGCATACAGGGGGTCTGAAGAGCGCTACACTCCAACTGAAAAGGAGATCTTAGCCGCGTATGAGGGGGTTCGGGCTGCTTCCGAAGTAGTCGGTACTGAAACGCAGCTCCTTCTGGCACCTCGACTGCCAGTGCTGAACTGGATGTTCAAGGGAAAGGTTCCCTCCACCCATCATGCTACTGATGCCACTTGGAGCAAGTGGATTGCGCTGATTACGCAACGAGCTCGGATGGGGAACCTCAGTCGTCCAGGAATCTTAGAGGTGATCATGGACTGGCCTGAAGGTAAAAAGTTTGGAACATCACCAGGAGAAGAGGTATCACGTGCTAAAGAGGCCCCACCATACAATGAACTACCAGAAAATGAAAAGAAATATGCCCTGTTCACAGATGGATCGTGTCGTATTGTGGGGAAGCATCGCAGATGGAAAGCTGCTGTGTGGAGCCCCACGCGACAAGTTGCAGAGGCCACTGAAGGNAAAGGAGAATCAAGCCAGTTTGCAGAGGTAAAGGCTGTCCAACTGGCCTTAGATGTTGCTGAACGGGAGAGGTGGCCAGTGCTTTATCTTTATACTGACTCATGGATGGTGGCGAATGCCTTATGGGGGTGGTTACAGCAGTGGGAGCAAAATAACTGGCAACGGAGGGGTAAACCTATTTGGGCTGCTGAACTGTGGAAAGACATTGCTGCCCGAATAAAGAATATGGTTGTAAAGGTGCGTCACGTAGATGCTCATGTGCCCAAGAGTCGGGCTACTGAAGAACAGAAAAATAACCATCAGGTAGATCGGGCTGCCAAAATTGAGGTGGCTCAAATAGACTTGGACTGGCAGAACAAGGGTGAATTATTTCTAGCTCGGTGGGCCCATGAGACCTCGGGCCATCAAGGAAGAGATGCAACATATAAGTGGGCTAGAGACCGAGGGGTGGACTTAACTATGGATGCTATTGCACAAGTTATTCATGACTGTGAAACATGTGCCATAATTAAACAAGCCAAGAGGATGAAACCTCTCTGGGAGGAAGGGCGATGGCAAAAGTATAAATATGGGGAGGCGTGGCAGATTGACTATATCACCTTGCCACGATCTCGCAATGGTAAGCGTTATGTGCTCACCATGGTGGAAGCAACCACTGGGTGGCTTGAAACATATGCAGTACCCCATGCTACCGCCAGAAACACCATATTAGGTCTGGAGAAACAAGTCCTGTGGCGACATGGCACCCCAGAAAGAATTGAATCAGATAATGGGACTCATTTCAAAAATTCTCTTATAAATACTTGGGCCAAAGAACATGGCATTGAATGGATTTATCATATTCCCTATCATGCACCAGCTTCTGGTAAAATTGAACGATACAATGGGTTGTTAAAAACTATGCTGAAAGCAATGGGTGGTGGAACATTTAAGCACTGGGAGAAGCATCTGGCAGAAGCCACCTGGTTGGTCAACACTAGAGGATCTATCAATCGTGATGGTCCTACCCAATCCAGCTCCCTACATACTGTAGAGGGAGATAAGGTCCCTGTAGTACATGTAAAGAGCATGTTGGGAAAAGCAGTTTGGGTCCTTCCAGCCTCTGGAAAGGGCAAACCTCTCCGTGGAACTGTTTTTGCCCAGGGACCTGGGTCCACTTGGTGGGTGATGCAGAAAGATGGGGATGTTCAATGTGTACCACAAGGGAATTTGATGTTGGGGGAGTGCAGTCAGTAGTTCTATGTATATGTATTAAGCATGATATAATGATGTAGAATAAGGGGTGGAA
>GGERVL-B#LTR/ERVL Seen with GGLTR3E1-3, and -F2 LTRs. ORF1 533-2110. ORF2 2243-5296. GG000006, GG000175, GG000210, GG000289, GG000413  @erv @gallus
GTTTTTGGTGGAGAATGCGGGCAATCTGAAGCTTTTAACGTTAGCAGAGAAAAAAAAGGATTTCTTTAAGCCGGAGACTGCGAGACTGCAAGGCATTGCTAGTGTGACCTTCATAGATTAGATTATAGTCTGGGCAGTCTGCCAAACTCCGGACACTGTACCGAGTGGGTTTTTTTGTTTTGTTTTTGTTTTTCCCCCCTTTTAGCAGCTACCAGCTATGAGTCTGCTCTTTATTGTAGGAGCGCTGTATAAGGGATTAAAAGCCATCATGTTCTTTGGAANTTACTGGCCTATAATTAACATCATGATTTCTTGCTGTGGAATTGTGTTCATATATAACCAAATAAGGGCACTGATGGAGACACCTGCCTGGTACCTTTATGCAATGTGGTATGATTTGAATTTTGACACTACATCCCAGATGGAATAGCTAATTTTACAAACAACACGATGTTTCAAACCGGTTTCCAGGCTTTCTTCTCAGTTTGTCACACGTTTTTCGAATGCCGAGCTAGTGCTCATACTCGTGTGCATGTTATCAATCTCCCTGAATGTATTCCTCTCCATTCGTGCTANGTGGAAGAAGTCTCCTCCAAAACCAGAGAATGCTGACTGGCAGGGAATATGGAGAGGTTTAGGAAAAATCTTAGAAGCGTGGGGACCCGCAATGTCATGGGATTTCACTCTTGAACACCTGTGGGATCCCGAGAAACTAAGCCAGCATTTGAGTCAGGGATGGTGCGGCTTAGATAGATCTAAGGAGGTACGGCTTATCTGGGGCTTGGCTTGTGCCTACCGCGCTCTATATAATACTATTCTGGAGAGAGAGAGTTTCCGAGCTGAGGTTCAAGCCAAAGGGGGAAATCTCCAAGTCAAATCTGATCAGTCACAGGAGACACCAGTAACAGTGTCAGTTGCCCCTGTGGAAGGCAAGAAATGGAAGCGGGTGTCCTCGCGTCTAGAACGGAAAAAAGAAGAAGAAGAAGCGGAGGAGGAGGTAGAGGAAGATCCAGGCGAGGGGNCCTCCTCAGAACCAAGAAAGGCAAAAGCAAAAACCAAGAGACACGGAGAGGAGAGTGATGAAGAGGAAGTCTCTATTACTGTTCGTCGACCTCTGAAGATGACTGAAATCCAAGGCTCAAGAAAGGAGTTTACACGGCGCCCGAACGAAACTCTTGTCACCTGGTTGCTTCGCTGTTGGGACGGCGGGGCCAGTAGCTTGTCTCTAGATGGTAACGAAGCCCGCCAACTAGGAGGCATTGCCAGAGACNNATCTATTGACAGAGGGATTAGTAGATGTTTGGATGGAGCCGCNACCCTCTGGGAACGAATGTTAGTAGCCGTGAGGGAAAGGTATCCCTNCAAAGACAGTCTGAAGCCTGCGATGAAAAAGTGGGATACAATTGAAAAAGGTATCCAGTATTTGAGGGAAATAGCCGTGGTGGAAATGTTGTATGACCCTAATTTTGTTCCTAACGATCCACGCCAAGACCATGATCCNGAGAGAGTGAGGACAACGCCTGATATATGGCAGAAACTCACAAGAGCAGCACCAGANAGATACGCCCCCACACTAGCAGCAACGTTCGACAGATACGAGGACCAACAGAGAAGACCCCTAGTTTTCGAATTGATTCTTACACTTCAAAACTATGAACAACATCTACCCCCAACTCACGCTTCCATTTCAGCCGTCTCAGAANTAGCAAACAGACTGGATGAAGTGCAAGAGCAGGTGTCTCTATTGATTAATCGTGACGAACCCGTAGTAGTATCAGAAACGTTTGATGAAGATCAGGATAAGCAAAGGGGCCTAATGAAGGAACTGATCAAACTAATGAAAATCCAATTAATTAAAGGNGATGGACCCCCCTCCTCACCTGTATCATCAAAAATCTCAGCTATTGAAGGCAAACGCTTTCCTGCTCAAGCGAGNAACAATAGTAAGACTACATCGCGTATTGCCTTGTGGCGTTACCTCCGTGACCATGGAGAAGACATGAGGAAGTGGCATGACCAAGCTACTCCTGTACTGCGAGCACGGGTGAGAGAATTACAGAACAGATCAACCACCAGTGTAGTTGCTCCAGTTACCACAGGTAATGAATAGAGGGGCCCTGCCCTCAGTCAGGGGGGGGAGAGGGATAACAGAGTTTATTGGACTGTGTGGATCCGATGGCCTGGCACATCAGAACCACAGAAATATAAGGCACTGGTGGATACCGGTGCACAGTGCACTCTAATGCCCTCGAGTCATGAAGGGACAGAATCAATCCATATTTCTGGAGTGACTGGGGGCTCTCAAGAATTGACTGTGTTGGAGGCCGAAATAAGCCTCACTGGTAAAGACTGGCAAAAACACCCTATTGTGACTGGCCCAGGGGCTCCATGCATACTTGGTATCGATTACCTCAGAAGGGGGCATTTCAAGGATCCTAAGGGGTATCGATGGGCCTTTGGAATAGCTGCTGTAGATACAGACAACATTAAGCAGCTGTCTGTTTTGCCTGGCCTGTCAGAAGATCCGTCTGCTGTGGGGTTGCTACGAGTAAAAGAGCAGCAGGTACCGATTGCCACAAAAACAGTGCACAGACGGCAGTACCGCACCAACAGGGATTCCTTGCTCCCCATTCATAAGTTGATTCGTCAACTAGAGAGTCAGGGAGTGATCAGCAGAACTCACTCACCTTTTAACAGCCCCATATGGCCAGTGCGTAAAGCCAGTGGAGAATGGAGGCTGACGGTAGACTACCGTGGCCTGAATGAAGTCACACCCCCGCTGAGTGCTGCTGTGCCGGACATGCTAGAACTCCAATATGAACTGGAGTCAAAAGCAGCCAAGTGGTATGCCACCACTGACATTGCTAATGCCTTCTTTTCCATTCCTCTGGCCACAGAATGCAGGCCGCAATTTGCCTTCACCTGGAGGGGCGTTCAGTATACTTGGAACCGTTTGCCCCAGGGGTGGAAACACAGCCCAACCATTTGCCATGGGTTGATCCAAACTGTATTGGAACAGGGCAGTGCTCCTGAGCACCTGCAATACATTGATGATATTGTTGTGTGGGGCGATACAGCAGAGGAAGTTTTTGAGAAAGGAGAGCAAATAATCCAAATTCTTCTGCAAGCTGGTTTTGCTATTAAGCGAAGCAAAGTGAAAGGACCTGCCCAGGAGATTCAGTTCCTAGGTATAAAGTGGCAAGATGGGCGTCGTCACATCCCAGCAGATGTGATCGACAAAATCACTGCCATGTCTCCGCCCACTAATAAGAAAGAGACACAATCTTTTCTGGGTGTAGTGGGCTTTTGGAGAATGCATGTTCCAAACTACAGCCTCATTGTAAGCCCCCTNTATCAGGTGACGCGGAAGAAGAATGATTTTACGTGGGGTCCTGAACAGCAGCAGGCTTTTGAGCAGATTAAACAGGAGATAGCCCGTGCCGTGGCCCTGGGGCCAGTACGGACGGGACAGGATGTAAAGAACATCCTCTACACTGCTGCTGGAGAGAAAGGTCCCACCTGGAGTTTGTGGCAAAGAGCCTCAGGAGAGACCCGAGGCCGACCCCTGGGATTCTGGAGTCGAGCATACAGGGGGTCTGAAGAGTGCTACACTCCAACTGAGAAGGAGATCTTAGCCGCGTATGAGGGGGTTCGGGCTGCTTCCGAAGTAGTCGGTACTGAAACGCAGCTCCTCCTGGCACCTCGACTGCCAGTGCTGAACTGGATGTTCAAAGGAAAGGTTCCCTCCACCCATCATGCTACTGATGCCACTTGGAGCAAGTGGATTGCACTGATTACGCAACGAGCTCGGATGGGGAACCTCAGTCGTCCAGGAATCTTAGAGGTGATCATGGACTGGCCTGAAGGTAAAAAGTTTGGAACATCACCAGGAGAAGAGGTATCACGTGCTAAAGAGGCCCCACCATACAATGAACTACCAGAAAATGAAAAGAAATATGCCCTGTTCACNGATGGATCGTGTCGTATTGTGGGGAAGCATCGCAGATGGAAAGCTGCTGTGTGGAGCCCCACACGACAAGTTGCAGAGGCCACTGAAGGAAAAGGAGAATCAAGCCAATTTGCAGAGGTAAAGGCTGTCCAGCTGGCCTTAGATGTTGCTGAACGGGAGAGGTGGCCAATGCTTTATCTTTATACTGACTCATGGATGGTGGCGAATGCCTTATGGGGGTGGTTACAGCAGTGGGAGCAAAACAACTGGCAACGGAGGGGTAAACCTATTTGGGCTGCTGAACTGTGGAAAGACATTGCTGCCCGAATAAAGAATATGGTTGTAAAGGTGCGCCACGTAGATGCTCATGTGCCCAAGAGTCGGGCTACTGAAGAACAGCAAAATAACCATCAGGTAGATCGAGCTGCCAGAATTGAGGTGGCTCAAATAGACTTGGACTGGCAGAACAAGGGTGAATTATTTCTAGCTCGGTGGGCCCATGAGACCTCGGGCCATCAAGGAAGAGATGCAACATATAAGTGGGCTAGAGACCGAGGGGTGGACTTAACTATGGATGCTATTGCACAGGTTATTCATGACTGTGAAACACGCGCCATAATTAAACAAGCCAAGAGGATGAAACCTCTCTGGGAGGAAGGGCGATGGCAAAAGTATAAATATGGGGAGGCGTGGCAGGTTGACTATATCACCTTGCCACGANCTCGCAATGGTAAGCGTTATGTGCTTACCATGGTGGAGGCGACCACTGGGTGGCTTGAAACATATGCAGTACCCCATGCTACCGCCCGAAACACCATATTAGGTCTGGAGAAACAAGTCCTGTGGCGACATGGCACCCCAGAAAGAATTGAGTCAGATAATGGGACTCATTTCAAAAATTCTCTTGTAAATACTTGGGCCAAAGANCATGGCATTGAGTGGATTTATCATATCCCCTATCATGCACCAGCCTCTGGTAAGATCGAACGATACAATGGGTTGTTAAAAACTATGCTGAAAGCAATGGGTGGTGGAACATTTAAGCACTGGGAGAAGCATTTGGCAGAAGCCACCTGGTTGGTCAACACTAGAGGATCNATCAATCGCGATGGTCCTACCCAATCCAGCTCCCTACATACTGTAGAGGGAGATAAGGTCCCTGTAGTACACGTAAAGAGCATGTTGGGAAAAGCGGTTTGGGTCCTTCCAGCTTNTGGAAAGGGCAAACCTCTCCGTGGAACTGTTTTTGCCCAGGGACCTGGGTCCACTTGGTGGGTGATGCAGAAAAATGGGGATGTTCAGTGTGTACCACAAGGGAATTTGATGCTGGGGGAGTGCAGTCAGTAATTCCATGTATATATATGTGTATATGTGTGCGTGTGTAATGCATGTTAATTATTGTTTGTTTGTATATATATATTAAGCATGATGTAGTGATGTGGAATAAGGGGTGGAA
>GGERVL-C#LTR/ERVL Seen with GGLTR3B2/3, -C2 and -G1/2 LTRs. ORF1 15-1841, ORF2 1973-4843. GG000098, GG000319, GG000428  @erv @gallus
ATTATTGGTGGAGAATGCGGGCAGCTATGGATCTCTACTTCATTTTAAGAGCATTGTATAGAGGACTAAGGACCATTATGTTCCTTGGAACATATTGGTTCCTTTTTAAGTTCATCATGTTCAGTGTCGGAGTTGCATATACGTATAGCCAATTAAGGGCACTGATGGAGATACCTGCCTGGTTCCTATACATCCCGGCTAATTTAACAGACAATATGATGTTTGGACTGGTTTCCAGGTGCTCTTCTCAGTTCCTTATGCATGTTCGGGATGCCAGCTTAGGTACTGTGCTATCAGTCTCTCTGAATGTATTCTCTGCAATAGTATTTTACATTATGTGGAGGAAGCTTTCCCCAAAACCAGAGAATGTTGAGTGGCAGGGAATATGGAGAGGTTTAGGAAAGAGATTAGAAGCGTGGGGACCCCCGGTGTCATGGGATTTCACTCTTGAACACCTGTGGGATCCTGAGAAACTAAGCGAGTATTTGAGTAAGGGATGGTGCAGCTCAGAAAGATCTGAGGAGGAACGGCTTATTTGGGGCTTGGCTTGTGCTTACCGAGCTCTATATAATACTATTCTGGAGAGAGAGAGTTTCCAAACTGAGATCCGAACCAAAGGGGGAAGCCTCCAAGTCAAACCCGACCAATCACAGGAGGCACCAGTATCAATGTCAGTTGCCCCTGTGGAAGGNCAGAAATGGAAACGGGTGTCCTCGCGTCTAGAACGGAAAGAAGAAGCGGAGGAAGTAGAGGAAGATCCAGGCGAGGGGCCCTCCCCAAAACCACCATCACCGAGAAAGGCAACNGAGAAAANTAAGAGACATGGAGAGGAGAGTGAGGAGGAGGGAGTCACTGTTACCACTATTCGTCGACCCCTGAAAATGACTGAAATCCAAGGCTCAAGAAAGGAGTTTATACGGCACCCGAACGAAACTGTTGTCACCTGGTTGCTTCGGTGTTGGGACAACGGGGCCAGTAGCGTGTCCCTAGATGGTAACGAAGCTCGCCAACTAGGAAACATTGCCNGAGACTCAGCTATTGACAGAGGGATTAGTAGATGTCTGGACGGAGTCGCCACCCTCTGGGAACGAATGTTATTAGCTGTGAAGGAAAGATATCCCTTCAAAGACGATCTGGAGCCTGAGATGAGAAAGTGGAATACTGTTGAGAAAGGCATCCAGTATTTGAGAGAAACAGCCGTGGTGGAAATGCTGTATGATCCCACGTTTGTTCCTAACGATCCACGCCAGGACCATGATCCTGAGAGAGTTAGGAGTACGCCCGATATATGGCGGAAGCTCACAAGAACAGCACCGGAAAGGTACGCCAGTACACTAGTAGTAACGTTCGATAGATACGAGGACCNACANAGAAGACCCCCAGTTTTTGAACTGATTCTTACACTTCAAAACTTTGAACAAAAATTACCNCCATCCCATGCTTCCATCTCAGCCATCTCCCAAGTGACAGAAAGACTAGATAAAGTGGAGAAGAAACAGGACGGCATGCTGGAGGAATTGTCTCTAGTGATTAATCGTGATGAACCCGTGGCAGTATCAGAAACACCCGATGAAGACCAGGATGATCAAAAGAGTCTGCTGAAGGAGCTGATCAAACTGATTAAAGTCTCAGCTATCAAAGGCAAACGCCTCCCTGCTCGAGCAAATGACAGCAGTAAATCTATGTCGCGTGCTGCCCTGTGGAGCTACTTACGTGAGCATGGAGAAGACATGAAGAAGTGGCATAAAAAACCCACTCCTGCACTACGAGCACGGGTGAGAGAATTACAAAACAGATCAACCACCACTGAAATTGCTCCCGTTACTGCAGGTAACNAATAGAGGGGCCCTGCCCTCAGTCGGGGGGGGAAAGGGATAATAGAGTGTATTGGACTGTGTGGATTCGATGGCCTGGCACATCAGAACCACAGGAATATAAGGCACTGGTGGACACCGGTGCCCAGTGCACTCTGATGCCCTCGAGTTATAAAGGGACAGAATCGATTTATATTTCTGGAGTGACTGGGGGCTCTCAGGAATTGTCTGTGTTGGAGGCAGAAATAAGCCTCACCGGTAAAGACTGGCAGAAGCATCCTATAGTGACTGGACAGGGGGCTCCATGCATACTTGGTATNGATTATCTCAGAAGGGGGCATTTCAAGGATCCCAAGGGATACCGATGGGCTTTTGGAATAGCTGCTGTAGATACAGACAACGTTAAGCAGCTGTCTGTCTTGCCTGGCCTGTCAGAAGACCCGTCTGTTGTGGGGTTACTACAGGTAAAAGAGCAGCAGGTACCAATTGCTACAAAAACGGTGCACAGACGGCAGTACCGCACCAACAGGGATTCCTTGCTCCCCATTCATAAGCTGATTCGTCAGCTAGAGAGTCAGGGAGTGATCAGCAAAACCCACTCACCTTTTAACAGCCCCATATGGCCGGTGCGTAAAGCCAGTGGAGAATGGAGGCTGACGGTAGACTACCGTGGCCTGAATGAAGTCACACCCCCACTGAGCGCTGCTGTGCCGGACATGTTAGAACTCCAGTATGAACTGGAGTCGAAAGCAGCCAAATGGTATGCCACCACTGACATTGCCAATGCATTCTTTTCCATTCCTTTGGCCACAGAATGCAGGCCACAGTTTGCTTTCACCTGGAGGGGCGTTCAGTACACCTGGAACCGTTTGCCCCAGGGGTGGAAACACAGCCCAACCATTTGCCATGGGTTGATCCAAACCGCACTGGAACAGGGCGGTGCTCCCGAGCACCTGCAGTACATTGATGACATTGTTGTGTGGGGCGATACAGCAGAGGAAGTTTTTAAGAAAGGAGAGCAAATAATCCAAATTCTTCTGCGTGCTGGTTTCGCTATTAAGCGAAACAAAGTGAAAGGACCTGCCCAGGAAATTCAGTTCCTAGGAGTAAAATGGCAAGATGGGCGTCGTCACATCCCAGNAGATGTGATCAACAAAATCACCGCTATGTCTCCACCCACTAGCAAGAAAGAGACACAGTCTTTTCTGGGTGTAGTGGGCTTTTGGAGAATGCACGTTCCAAACTACAGCCTCATTGTAAGCCCCCTCTATCAGGTGACGCGGAAGAAGAATAATTTTGCGTGGGGTCCTGAGCAGCAGCAGGCTTTTGAGCAGATTAAACAGGAGATAGCCCGTGCCGTGGCCCTGGGGCCAGTACGGACGGGACAGGATGTAAAGAACATCCTCTACACTGCTGCTGGAGAGAAAGGTCCCACTTGGAGTCTGTGGCAAAGAGCCTCAGGAGAGACCCGAGGCCGACCCCTGGGATTCTGGAGTCGAGCGTACAGGGGGTCTGAAGAGTGCTACACTCCAACTGAAAAGGAGATCTTAGCCGCGTATGAGGGGGTTCGGGCTGCTTCTGAAGTAATCGGTACTGAAACGCAGCTCCTTCTAGCACCTCGACTGCCAGTGCTGAACTGGATGTTCAAGGGAAAGGTTCCCTCCACCCATCATGCTACTGATGCCACTTGGAGTAAGTGGATTGCGCTGATTACGCAACGAGCTCGGATGGGGAACCTCAGCCGTCCAGGAATCCTAGAGGTGATCATGGACTGGCCTGAAGGCAAAAAGTTTGGAACATCACCAGCAGAAGAGGTATCGCGTGCTAAAGAGGCCCCACCATACAATGAACTACCAGAAAATGAAAAGAAATATGCCCTGTTCACAGATGGATCGTGTCGTATTGTGGGGAAGCATCGCAGATGGAAAGCTGCTGTGTGGAGCCCCACACGACAAGTTGCAGAGGCCACTGAAGGTAAAGGAGAATCAAGCCAGTTCGCAGAGGTAAAGGCTGTCCAGCTGGCCTTAGATGTTGCTGAACGGGAGAGGTGGCCAATGCTTTATCTTTATACTGACTCATGGATGGTGGCAAATGCCTTATGGGGGTGGTTACAGCAGTGGGAGCAAAACAACTGGCAANGGAGGGGTAAACCTATTTGGGCTGCTGAACTGTGGAAAGACATTGCTGCCCGAATAAAGAATATGGTTGTAAAGGTGCGCCATGTAGATGCTCATGTGCCCAAGAGTCGGGCTACTGAAGAACAACAAAATAACCATCAGGTAGATCGAGCTGCCAGAATTGAGGTGGCTCAAATAGACTTGGACTGGCAGAACAAGGGTGAATTATTTCTAGCTCGGTGGGCCCATGAGACCTCGGGCCATCAAGGAAGAGATGCAACATATAAGTGGGCTAGAGACCGAGGGGTGGACTTAACTATGGACGCTATTGCACAGGTTATTCATGACTGTGANACATGCGCCACAATTAAACAAGCCAAGAGGATGAAACCTCTCTGGGGGGAAGGGCGATGGCAAAAGTATAAATATGGGGAGGCGTGGCAGGTTGATTATATCACCTTGCCACGATCTCGCAATGGTAAGCGTTATGTGCTTACCATGGTGGAGGCAACCACTGGGTGGCTTGAAACATATGCAGTACCCCATGCTACCGCCCGAAACACCATATTAGGTCTCGAGAAACAAGTCCTGTGGCGACATGGCACTCCAGAAAGAACTGAGTCAGATAATGGGACTCATTTCAAAAATTCTCTTGTAAATACTTGGGCCAAAGATCATGGCATTGAGTGGATTTATCATATCCCCTATCATGCACCAGCTTCTGGTAAAATTGAACGATACAATGGGTTGTTAAAAACCATGTTGAAAGCAATGGGTGGCGGAACATTTAAGCACTGGGAGAAGCATTTGGCAGAAGCCACCTGGTTGGTCAACACTCGAGGATCTATCAATCGTGATGGTCCTGCCCATCCAGCTCCCTACATACTGTNAAGGGAGATAAGGTCCCTGTAGTACATGTAAAGAACATGTTGGGAAAAGCGGTTTGGGTCCTTCCAGCTTCTGGGAAGGGCAAACCTCTCCGTGGAACTGTTTTTGCCCAGGGACCTGGGTCCACTTGGTGGGTGATGCAGAAAAATGGGGATGTTCAATGTGTACCACAAGGGAATTTGATGCTGGGGGAGTGCAGTCAGTAATTCCATGTATATATATATGTATATGTGTGTGTGTGTTTAATGCATGTTAATTATNGTTTGTTTGTATATATATATTAAGCATGATGTAGTGATGTAGAATAAGGGGTGGAA
>GGLTR3A#LTR/ERVL   GG000001 5 bp TDS 3% subst level @cut @general @gallus
TGTCATGGTTTTATGATTTTTGGTTATCAGTATTCCACATCACAACATCATGCAGTGTACTGGGAGTTAAAGAGCAAATGCTTTAGTTCCGGGTACCTGTCTGGAAGAGAAGAAGAACTACGTTCCCCAAGAGCCTTTTCGAGTACTGTTATCATTCCTGCTCAAGGGAACAGATATAAGGGCGCAGGTCATCTGACTCGCCCCTCTTCTCGTCTCGCCGTGTTCCCTGTCGGATCGGCTCGCTACTGCTGCGCCCGACTGCACGCAAGGCTTCAGTATTAGCGTAAGGCCTTTGGCTCTCGGACAATCTTTCTCTCAATTATTGTTGATTTATATTGTATTATAGTGTGTTATCTTACATTCCGATACTATATTTAGTAAATTAGTTTGTTTCTCCTCAGATCGTTGCCGCTGTTTTTAATTATTTTGGGGTCCCCTGTTTCCCTTCCTGGAGGCGCGGATTTTGCGAAATCCCTCCGCCCCACTAGTCGCGGAACCGGGCCGGACCAGCCCTTAAACCGTCGACA
>GGLTR3B1#LTR/ERVL GG000014 5 bp dups 8% subst @cut @general @gallus
TGTCATGGTTTTATGATTTTTGGTTACTGGTATTCCACATCATAACATCATGTAGTGCACTGGGAGTTAAAGTGTTAATGCTCCAGTTCCGGGCACCTGTCCGGAAGAGAAGAAGAACTACATACCCCAGGGGGCTTTGCGGTCAGAGAGGAGATATAACCTCTGGCAAAGTCACCTGATGTCCCTTTCTTCCCTCGGCTCTCCTCCCTGTTGCTCGTCCCGACCGCACGCATCGCCTCAGCACTACTGTAAGGCCTACAGCTTTCAGATACTCTCTCATTATATTTGATTTATTTGCTTCAATTCTAATTATATTGTATTATAGTGTGTTATCTTGCATTCCGATACCGTATTTAGTAAATTAGTTTGTTTCTCCTCAGATCGTTGCCGCTGTTTTTAATTATTTTGGGGTCCCCTGTTTCCCTTTTCCGGAGGCGCGGATTTTGCGAAATCCCTCCGCCCCACTAGTCACGGAACCGGGCCGAACCAGCCCGTAAACCGTTGACA
>GGLTR3B2#LTR/ERVL GG000029 5 bp dups 10% subst @cut  @general @gallus
TGTCATGGTTTTATGATTTTTGGTTATCGGTATTCCACATCATAACATCATGTAGTGCACTGGGAGTTAAAGAGTTAATGCTCCAGTTCCGGGCACCTGTCCCGGAAGAGAAGAAGAACTACATTCCCCAGAAGACTGTTCGCTGTTCTGTTATCATTCCTGCTCAGGGGGAACACATATAAGGCCTCGGTAGGTCACCTGACGTCCCTCTTTTCGATCGTCAGGCTCTCTCGCTGCTGCTCGTCCCGACCGCACGCCATTAGTGTAAGGCCTTCAGCTTTTTCAGACACTCTTTCTCTCATTATATTTGATTTATTAGCTTCAATTCTAATTATATTGTATTATAGTGTGTTATCTTGCATTCCGATACCATATTTAGTAAATTAGTTTGTTTCTCCTCAGATCGTTGCCGCTGTTTTTAATTATTCGGGGTCCCCTGTTTCCCCTTTCCGGAGGCGCGGATCTGCGGATCCCTCCGCCCCGCTAGTCACGGAACCGGGCCGAACCAGCCCGTAAACCGTTGACA
>GGLTR3B3#LTR/ERVL GG000017 5 bp dups 10% subst @cut @general @gallus
TGTCATGGTTTTATGATTTTTGGTTATCGGTATTCCACATCATAACATCATGTAGTGCACTGGGAGTTAAAGAGTTAATGCTCCAGTTCCGGGCACCTGTCCGGAAGAGAAGAAGAACTACATACCCCAGAGGACTTTGCGTTCAGAGAGGAGATATAACCCCTGGCAAGGTCACGAGACCTTCCCTTTTTCCTTCGGCTCTCCTCCCTGCTGCTCGACCCGACTGCGCGTCTCACCTCAGCGTTATGGTGAGGCCTTTCCACCTTTCGGACACTCTCTCTCATTATATTTGATTTATTAGCTTCAATTCTAATTATATTGTATTATAGTGTGTTATCTTGCATTCCGATACCATATTTAGTAAATTAGTTTGTTTCTCCTCAGATCGTTGCCGCTGTTTTTAATTATTCGGGGTCCCCTGTTTCCCCTTTCCGGAGGCGCGGATCTGCGGATCCCTCCGCCCCGCTAGTCACGGAACCGGGCCGAACCAGCCCGTAAACCGTTGACA
>GGLTR3B4#LTR/ERVL GG000017 5 bp dups 11% subst @cut @general @gallus
TGTCATGGTTTTATGATTTTTGGTTATCGGTATTCCACATCATAACATCATGTAGTGCACTGGGAGTTAAAGAGTTAATGCTCCAGTTCCGGGTACCTGTCCCAGAAGAGAAGAACTACATACCCCAGAGGACTTTGCGTTCAGAGAGGAGATAAAACCCCTGGCAAGGTCACGAGACCTGGCTCTCCTCCCTTCTGCTCGNCCCGACCGCACGTCTCGCCTCAGCATTAGAGTAAGGCCTTCGGTTTTCGGACACTCTCTCTCATTNTATTTGATTTATTAGCTCCAATTCTAATTATATTGTATTATATTGTATTATAGTGTGTTATCTTGCATTCCGATATCTTATTTAGTAAATTAGTTTGTTTCTCCTCAGATCGTTGCCGCTGTTTTGTTTTGGGCCCATCTCTCTACCCTTTTCCCTTATCCCTTTCCGGGGCGCGGATCCGCGGGTCCCTCCGCCCCGCTAGTCACGGAACCGGGCCAAACCAGCCCATAAACCGTTGACA
>GGLTR3C1#LTR/ERVL GG000026 13% subst 5 bp dups @cut @general @gallus  
TGTCGTGGTTTTATGATTTTTGTTATCGGTATTCCACATCATAACATCATGTAGTGCACTGGGAGTTAAAGAGTTAATGCTGCAGTTCCGTGGATTGTCGATAGTTCCGGGTACCTGGTCTCAGAAGAGAAGAATGAACTACAGCTCCCAGAAGACTTCATTATTCCGTTTCCATTTTCCATTCAGAGGGAAAGATAAAACTGNCTGGGAGTCACGAGACTGTCTCTCTTTCTGCTCGTCTCTGCTGTGTGTGCTCCCTAGCCGTCTCGCCTACAGCATTAGAGTAAGGCCTTCGGTTTTCGGACACTCTCTCTCATTTATTTGATTTATTAGCTTCAATTCCAATTATATTGTATTATATTGTGTTATCTCGCATTCCGCTATCATATTTAGTAAATTAGTTTTCTCCCTTAGCTCGTTGCCGCTGTTTTCCTTCTCTAGGCCCATCTCCCTACCTTTTCCCTTTCCCCCTTTCCCGGGGCGTGGGTCCATGGGTCCCTCCGCCCCATTAGTCACGGAACTAGGCCGAACCGGGCCGGAACCGTGACA
>GGLTR3C2#LTR/ERVL GG000026 13% subst 5 bp dups @cut @general @gallus
TGTCATGGTTTTATGATTTTTGTTATCGGTATTCCACATCATAACATCATGTAGTGCACTGGGAGTTAAAGAGTTAATGCTCCAGTTCCGTGGATTGTCGATATTTCCGGGTACCTGGTTCTCAGAAGAGAAGAAGAACTACATATCCCAGAGGACTTCACTGTTCCGTTTCCATTTTCCGTTCAGAGGGAAAGATAAAACTGTTCGCAAGTCACGAGACTGCCCCTTCTTTTNCTGCTCGTCTCTGCGGTGTGTGCTCCCTAGCCGTCTCGCCTTCAGCATTAGAGTAAGGCCTTCGGTTTTGGACACTCTCTCTCTCATTTTATTTGATTTATTAGCTTCAATTCCAATTATATTGTATTATATTGTGTTATCTTGCATTCCGATATCNTATTTAGTAAATTAGTTTTCTCCCTCAGNTCGTTGCCGCTGTTTTGTTTTTAGGCCCATCTCCCTACCCTTTCCCCTTTCCCCCTTTCCCCTCTCCCGGGGCGTGGGTCCGTGGGTCCCCCCGCCCCGTTAGTCATGGAACCGGGCCGAACCAGCCCGTAAACCATTGACA
>GGLTR3D#LTR/ERVL GG000048  12% subst 5 bp dups @cut @general @gallus
TGTCATGGTTTTATGATTTTTGTTATCGGTATTCCACATCATAACATCATGTAAAGCACTGGGAGTTAAAGAGTTAATGCTCCAGTTCCGTGGACTGCCGATTTTCCGAATACCTGGCTCTCAGAAGAGAAGAACTACATACCCCAGAGGACTTTGCGTTCAGAGGGGAAGATAAAGCTCCTGGCAAGTCACGGGACTCGCTCTCTTCTCGCTGCCTGGCAGTGTGTGGGTGTGCTCCCCAGCCATTTCGCCTTCAATTCAGAGTAAGGCCTTCGGTTTCGGACACTCTCTCTCTCATTTTATTTGATTTATTAGCCTCAATTCCAATTATATATTGTATTATATTGTGTTATCTTGCATTCCGATATCATATTTAGTAAATTAACTTTCCTCCTCAGATCGTTGCCGCTGTTCTGTTTTTAGGCCCATCTCCCATCTCCCTACCCTTCCCCCTTTCCCTTTCCCCTTTCCCGGGGCGTGGGTCCGTGGGTCCCCTGCCCCATTAGTCACAGAACCGGGCCGAACCGGCCTGTAAACCGTCGACACCCCCCCCTCCCCTCCCCTTTTCGGGCCGGTGGGCCTGTGGGCCTGCTGTCCCCCTGTCACGGACACAGATAGATCTAGAGATAACTCCGTGACA
>GGLTR3E1#LTR/ERVL GG000046 5 bp dups 6-7% subst @cut @general @gallus
TGTCATGGTTTTGTAATTTTGCTATTGGTATTCCACATCATAACATCATGTACAGCACGGGTAATTAAAGGGTTAATACTCCAGTTCCGTGGATTGACAACCTTCCAGATACCTGCTTCTCAAAAGAGAAGAAGAACTACATATCCCAGAGGACCTCACGGTCAGAGAAGGAAGATACGTCACGGAAGTCACGGGATCTGAGTCACGTGATCGGGCTCACGCTCTCTCTCTGGCAGCCAGGCAGAGGGGTGGGTGTGCTTCCAAGCCGTGCGCCTTCATTCAAGTAGGCCTTTCGGTTTCGGAAACTTTCTCTCTCTTATTTTATTTGATTTATTACCCTTACTTTCAATTAGATTGTATTATATTGTGTTATCTTGCATTCCGATATCATAGTTAGTAAAATAAGTTTTCCTCCTTAGATCGTTGCCGCTGCTCCGTTCTTTTTCCCTCTCTGAGCCCAGCTCCCGTTCCCCTACCCCTTTCCCTTTTCCCTTCCCATTTTTGGGAGCCAGGGGGCCCACGGGCCTACTGCCCCCCTGTCACGGGCATAGATTTATCTAGATTGATCTAGATAACTCCGTGACA
>GGLTR3E2#LTR/ERVL GG000047 5 bp dups 7% subst @cut @general @gallus
TGTCATGGTTTTGTAATTTTGCTATTGGTATTCCACATCATAACATCATGTAAAGCACGGGTAATTAAAGAGTTAATACTCCAGTTCCGTGGACTGACAACTTTCCGGATACCTGCTTCTCAAAAGAGAAGAAGAACTACATATCCCAGGGGACCTCACGGTCAGAGAGGAAGATACGTCACGGAAGTCACGGGATCTCGCTCTCGGACGGGAGCTCNCTCTCTCTCGCTGCCTGGCAGAGGGTGTGGGTGTGCTTCCAAGCCGTGCGCCTTCAGTTCAAAGTAGGCCTTTTGGTTTTGGAAACTCTCTCTCTTATTTTATTTGATTTATTAGCCTCAATTTCAATTAGATTGTATTATATTGTGTTATCTTGCATTCCGATATCATAGTTAGTAAAATTTAGTTTTCCTCCTTAGATCGTTGCCGCTGTTCTGTCTTTGAGCCCAGCTCCCATCTCCCTACCCTTTCCCTTTTTCCCTTCCCATTTTTGGGGGCCAGGGGGCCCACGGGCCTACTGCCCCCCTGTCACGGGCATAGATTGATCTAGATAACTCCGTGACA
>GGLTR3E3#LTR/ERVL GG000047 5 bp dups 8% subst @cut @general @gallus
TGTCATGGTTTTATAATTTTGTTATCGGTATTCCACATCATAACATCATGTAAAGCACGGGTAATTAAAGAGTTAATACTCCAGTTCCGTGGACTGACAACTTTCCGGATACCTGGTTCTCAGAAGAGAAGAACTACATATCCCAGGGGACTTCACGTTCAGAGAGGAAGATAAGCCACGGGAGGAAGTCACGGGATCTCGCTCTCTGGCTCTCTCTCGCTCGCTGCCTGGCAGTGTGTGGGTGTGCTCCCCAGCCGTGCGCCTTCAGTTCAAAGTAGGCCTTTCGGTTTCGGACACTCTCTCTCTTATTTTATTTGATTTATTAGCCTCAATTTCAATTATATTGTATTATATTGTGTTATCTTGCATTCCGATATCATATTTAGTAAAATTAAGTTTTCCTCCTTAGATCGTTGCCGCTGTTCTGTTTTTGGGCCCAGCTCCCATCTCCCTACCCTTCCCCTTTTCCCTTCCCATTTTGGGGCCAGGGGGCCTACGGGCCTGCTGCCCCCTGTCACGGGCACAGATTGATCTAGATAACTCCGTGACA
>GGLTR3F1#LTR/ERVL GG000024, GG000025 5 bp dups 3% subst @cut @general @gallus
TGTCATGGTTTTGTAACTTCGCTATTGGTATTCCACATCATAACATCATGGACAAAAGAGAAGAACTACGTATCCCAGAGGACCTCACGGTCAGAGAAGGAAGACACATCACGGAAGATACGTCATCTGGTTGCGCGCGGTGCTTCTTCACTTTCGCTTGCTGCCGGGAGAGGAGTGGGTGTGCTTTCCAAGCCGGGCGCCTTCATCAAGTAAGGCTTTCGGTTTCGGAAACTCTCTCACTCTCTCTCTCTCTCCCTCTCTATCGCTCTTTCGCTCTCTCTCCCTCATTCCATTTGGTTTATTATACTTACTCCCAATTAGATTGTATTGTATCGTGTCATCTTGCATCCCAACATCATAGTTAGTAAAATAAGTTCTCCTTCTTAGATTGTTGCCACCGCTTCGTTTTTCTCGGGAAGTGAAGGGGGAGGGGGGCCCGCAAGCCTACCGGCCCCCTGTCACGGGCACAGATCTATCTAGGTAACTCCGTGACA
>GGLTR3F2#LTR/ERVL  GG000024, GG000025  6% subst @cut @general @gallus
TGTCATGGTTTTGTAATTTTGCTATTGGTATTCCACATCATAACATCATGGACAAAAGAGAAGAAGAACTACGTATCCCAGAGGACCTCACGGTCAGAGAAGGAAGATACATCACGGAAGATACGTCATCTGGTTGCGCGCGGTCTTTTTCACTTTCGCTTGCTGCCAGGGAGAGGAGTGGGTGTGCTTCCAAGCCGTGCGCCTTCATCAAGTAGGGCTTTCGGTTTCGGAAACTCTCTCACTCTCTCTCTCTATCGCTCTTTCGCTCTCTCTCATTTCATTTGATTTATTATCCTTACTTCCAATTAGATTGTATTATATCGTGTCATCTTGCATTCCAACATCGTAGTTAGTAAAATAAGTTCTCCTTCTTAGATCGTTGCCGCTGCTCCGTTTTTTTTCGGGAAGCCAGGGGGGCCCGCGAGCCTACTGCCCCCCTGTCACGGGCACAGATCTATCTAGATAACTCCGTGACA
>GGLTR3G1#LTR/ERVL 10% subst @cut @general @gallus
TGTTGTGGTTTGGTGATTTTTTGTTGTCAGTATTCCACATCAGAACATCATGTGAACCAGTGGAAGTTAAAGAGTTAATGTTCTGGTTCCGTTTACTGCCTCTTATGGGCATTTTGAGTATTCTGATGGGAGGGGAGGGGCGGCATCCCCGGAGGACTTGGCGCGAAGAGGAAGTGAGGTGGAGCTCCGGACAGGACCCCGGGCGTCTCTCCCTCCCTCGGGGCCGGCTCAGCTCGCTGCGGAGAAGGGCACGTGCTTCCCTCGCACTTTGGGTACTCTTCTCTCTCTCATTTTGTTTGATTTTGTTGGATTTAGTAAATTACCGTTCCTCCTCAGATCGTTGCCGGTGTGTTCCTTTTGTTAAACCCATCTACTAGCTCTCTGCCCTTCCCCCCACCCCTCCCGGAGCGCGCGGCCCGCGGCGCGCCCTGCTGTGAGGCCGGGGCCGGCCGGATCGCGCGGCAAATTGCTGGTACCCTTCCTTTTTTTTCCTTCGCCCTTTTGTCTCTCTTTTTTTTTTTTTTCCGGGCCTGTGCCCCCCTTGTCACGGACTCAGATAACTCCATGACA
>GGLTR3G2#LTR/ERVL  GG000401 11% subst @cut @general @gallus
TGTTGTGGTTTTGTGATTTTTGTTGTCGGTATTCCACATCAGAACATCATGCAGAACAGTGGGAGTTAAAGAGTTAATGTTCTGGTTCCGTGTTACCGCCTTTTTGGGCATTTTGGGCTCCCGGAGGGGAGGGGAGGGGCGGCATCCCCGGAGGACTTGGCGCGAAGAGGAAGTGAGGTGGAGCTCCGGACCGGACCCCAGCCGGCGCTCGCTCTGCCTCTGGCCGTCTCAGCTCGCCGCGGAGGAAAAGCACGTGCTTCCCTCGCACTATCGTGGTTTGACTCGTACTTTGGGTACTCTTGTCTCTCTCATTTTGTTTGATTTGGTTAAATTTAGTAAAATACCGTTCCTCCTCAGATCGCTGCCATTGTGTTTTCTCTTKGTTAAAACTATCTGCTAGCTCTCTGCCCTTCCCCCTCTCCCGGAGCGCGCGGCCCGGGGCCGGCCGGGTCACGCGGCAAGCCGTTAGTACCCCTTCCTTCCTTTTCCTTCGCTCCTTTGTCTCTCCTTTTTTTTTTTTTCCTTTTTTCCTTTTTTTTTTTCTTTCTCCCGGGGCCTGTGCCCCCCTGTCACGGACTTATATCTAGGGATAACCCCGTGACA
>GGLTR4A#LTR/ERVL GG000002, GG000050, GG000843 5 bp TSD 12% subst (oriented with GGERVL1) @cut @general @gallus
TGTAGCGGAAATGCTAAGTCACGGCTTGAAGCAGTGATTGAGCACCTGGTGGGAAGGCAGGGCCAACCCAGGGGAGCTCAGGTGCATGCAATGCACCTGAGTGACCGGAAGGGGTGGAGCCAGGATCCACCCCTTCCCAGACCTCATTTAAGGGTTGGCAGTGGAGGCAGAGGGATCTTGCTGGAGATCCCTGCCTACCTGAGGCCTTCCAAGGGTAAGCAGCTTTTTTCCTTTGTTTCTGTGTCCACAGCTGCTGCATTTGGGCNTATCCTCACTTGCTGCAGCCTAGGACTTTGCTACCCTGCTGTTATTGCTGTGCTTTCCATCGCATTATAGCGTTACA
>GGLTR4B#LTR/ERVL GG000050, GG000843 5 bp TSD  9% subst (oriented with GGERVL1) @cut @general @gallus
TGTAGTGGAAATGCTAAGTCACGGCCTGAAGCAGTGATTGAGCACCTGGTGGGAAGGCAGGGCCAACCCAGGGGAGCTCAGGTGCATGCAATGCACCTGAGTGACCGGAAGGGGTGGAGCCAGGATCCACCCCTTCCCAGACCTCATTTAAGGGTTGGCAGTGGAGGTGAGGGCATCTCTTGCTGGAGATCCCTGCCTACCTGAGGCCTTCCAAAGGTAAGCAGCTCTTTTCCTTCATTTCTGTATCTGTGGCTGCTGCATTTGGGCTCGTTCTCATTTGCTGTAGCCAAAGACTTTGCCACCCTGCTATTATCATCCCATTATAGCATTACA
>GGLTR5A#LTR/ERVL  GG000075 5 bp FSD; 20 % subst level (though subs possible)  @cut @general @gallus
TGCCATGGTTTTGGCTGGGATAGAGTTAATTTTCTTCGTAGAGGCTCGTATGATGCTGTGTTTTGGATTTTTGATGAAAACAGTGGTGATAACACACCGATGTTTTAGTTGTTGCNGAGCAGTGCTTGCACAGAGCCAAGGACTTTTCTGCTTCTCACGCTGCCCTGCCAGCGAGGAGGCTGGGGGTGCACAAGGAGCTGGGAGGGGACACAGCCAGGACAGCTGACCCAAACTGACCAAAGGGATATCCCATACCATATGGCGTCATGCTCAGCAATAAAAGCTGGGGTAAAGAAGGAGGAAGGGGGGGACGTTTGGAGTGATGGCATTTGTCTTCCCAAGAAACCGTTATGCATGATGAGCCCTGCTTTCCTGGAAGTGGCTGAACATCTGCCTGCCGATGGGAAGTAGTGAATGAATTCCTTGTTTTGCTTTGCTTGCACGCGCAGCTTTTGCTTTACCTAGTAAACTGTCTTTATCTCAACCCATGAGTTCTCNCACTTTTACCTTTCTGATTCTCTCCCCCATCCCACCTGGGGAGAGTGAGCGAGCGGCTGTGTGGTGCTGAGCTGCCTGCCGGGGTTAAACCACAACA
>GGLTR5B#LTR/ERVL GG000076, 5' and 3' 150 bp 80-85% similar to GGLTR5 Part of it known as GGREP1 5 bp FSD; 11% subst @cut @general @gallus (similar sequence occurs in goose)
TGTCTTAGTTTCAGCTGGGATGGAATTGTTTTCTTCAGAGTGTCTGGTATGATGCTATGTTTTGGTTCTAGGAGAAAAACAATGTTGATAACACACCGATGTTTATAGTTGCTGCTAAGCAGTGTTGTACAGAGCCAAGGCCATTCTCAGTGAAGGGCCCAAGGAGCTGGGAGGGAACAGAATTAGGACAGCTGACTTAAACTGGCCAAAGGGATATTCCATACCATATGACATCANGCGGAAGGAGTTTTGAAGGGGGTGGGAGTTCATCTCGCTCTCTTCCGCTGCTCGGGGGGCTAGCTGGGCATCGGTCGGGGGGTGGTGAGCAATTGCTTGTGCATCACTTGTTATATACATTCATATATATATATATAGTCATAACTATTATCCTTTTCCTTTTCTCTATCTTAGTAAATAGTTTTATCTCAACCCACGAGTTCTACTTTTGTTTTTTCCCGATTCTCTCCCCCATCCCACTGGGAAGGGGGGGAGTGAGCGAACGACTGTGTGGTGCTCAGCCACCTGCCGGGTTAAACCACAACA
>GGLTR6#LTR/ERVL GG000262, GG000263 5 bp TSD; 14% subst 3' 115 bases distantly related to GGLTR9 @cut @general @gallus
TGTGTGGAAAAATACAGATCACGGCCTGAACAGGCGACTAGCCCATGAGAAAGGGCTCGTGTTAGCTTGGGAACACAAGTAAACTGCCTCTAGCTTCTGCATGTAGCTAGAAGAAACTTGTTTGTGAGAAACTGCTCTGTAGCTGTAACTAAGTMTCCTTGCTTTCTGTGAATGACCTTGCTTATCCTGATACGCGATGCTTTATTGTCTCCCGCTGTTATATATATGGCCACGGTACTAAGGGGTTGTGCGGACATCTTGCCGGCCGGCCGCCACCGGTATCTGCTGGGGGWAACCCCAGGGCGGACACTCTACCGGCCGGCCGCCCCCAGTAATGTGAGTACCTCTCTATTAAACTGATGAATGTTAACTTGCCTCCGCGTACTTTCTTCGGGATCGGTAAACCTTACGCAGAAGCGCTGGCGCTTTTGCATTACA
>GGLTR8A#LTR/ERVL GG000081, GG000168 3' 120 bp 75% similar to that of GGLTR5A/B Many obscure subfamilies (other recon consensi 'included' are GG000062, GG000063, GG000070, GG000079, GG000265, GG000317, and GG000348; GG0000311 is part of a recent segmental duplication)  8% subst 5bp dups @cut @general @gallus
TGTATTGGGTTTACGTGGCAAGGTTTTGGTAGCGGGGGGGCTGCAGGGGTGGCCTCTGTGAGCAGAGCCCAGCAGCTGCCCCATGTCAGATCAGAGCCAGCTCCAGCTGCTCCAAAAGGGACCCGCTGCTGCCAGAGCTGAGCCGTGAGCGACGCTGGGTGTGCCTCTGGGAGAGCAGATTTAAGGAAGGGAAAAACTGCTGCGCAACAGCAGCTGGGAGAGAGGAGTGAGAAATGNGAGAGAAGCAGCCCTGCAGCCACCAAGGTCAGTGCAGGAGGAGGGCAGGAGGTGCTCCAGGCACGGAGCAGAAGCTCCCTGCAGCCCAGGAGAGGCCCACGGAGGAGCAGGCTGTCCCCCTGCAGCCCACGGGCACCACGCGGAGCAGATCTCCACGTGCAGCCATGGAGGAGCCCACGGTGCAGCAGTGGATGNGGCCTGAAGGAGGCACAGCCCATGGAGAGCCCCCGCAGGAGCAGCCCCGGGCCGGAGCTGCAGCCCGTGGAGAGGAGCCCGCGGTGGGGCAGGAGGGCTGGGGGAGCTGCCGCCCGTGGGGACCCGTGCTGGAGCAGTGCCTGAAGGGTGGGCCCCGTGGTACGGAGCCGTGTTGGAGCAGTGCTGGGAGAGCTGCAGCCTGTGGGAAGCCCACGTGGGATCAGTTCGGGAAGGACGGCATCCCGTGGGAGGGACCCACGTGGAGCAGGGGCAGAGAGTGACCATGGAGGAGCGGCAGAGACGAAGCGTTATGGACTGACCGCAGCCCCCATTCCCTGTTCCCCTGTGCTGCTCGGGGGGAGGAGGTAGAAGAGGGTGGATGGGGGGAAGGTGTTTTTAGTTTGCTTTTAGTTCTCACTGCTCTAGTCTGTTAGTAATAGGCAATAAATTACATTAATCTCCCTACGCTGAGTCTGTTTTGCCCGTGACGGTAATTGGTGAGCGATCTCCCTGTCCTTATCTCAACCCTTGAGCCCTTTTTCATTGTATTTTCTCCCCCTCTTCCTTTGAGGAGGGGGAGTGAGAGAGCAGTGTGGTGGAGTTTAGCTGCCCATCAGGGTGAAACCACCACA
>GGLTR8B#LTR/ERVL GG000081, GG000168 20% subst 5bp dups @cut @general @gallus
TGTATTGGGCTTACGTGGCAAGGTTTTGGTAGCGGAGGGGCTGCAGGGGTGGCCTCTGTGAGCAGAGCCCAGCAGCTGCCCCATGTCAGATCAGAGCCAGCTCCAGCTGCTCCAAAAGGGACCCGCCGCTGGCCAGAGCTGAGCCATGAGCGACGCTGGNTGTGCCTCTGGGAGAGCAGATTTAAGAAAGGGAAAAACTGCTGCGCAACAGCAGCTGGGAGAGAGGAGTGAGAAATGTGGAGAGAAACAGCCCTGCAGNCACCAAGGTCAGTGCAGAAGGAGGGCAGGAGGTGCTCCAGGCGCGGAGCAGAAGTTCCCTGCAGCCCAGGAGAGGCCCATGGNGGAGCAGGCTGTCCCCCTGCAGCCCACGGGCACCACGCGGAGCAGATCTCCACGTGCAGCCATGGAGGAGCCCACGGTGCAGCAGTGGATGTGGCCTGGAGGAGGTGCAGCCCATGGAGAGCCCCTGCAGGAGCAGCCCCGGGCCGGAGCTGCAGCCCATGGAGAGGAGCCCGCGGTGGGGCAGGAGGGCTGGGGGAGCTGCTGCCCGTGGGGACCCGTGCTGGAGCAGTGCGCTCCTGAAGGATGGGCCCCGTGGTACGGAGCCATGTTGGAGCAGTGCTTGGAGAGCTGCAGCCTGTGGGAAGCCCACGCAGGATCAGTTCGGGAAGGACGGCATCCCGTGGGAGGGACCCCACGTGGAGCAGGGGCAGAGAGTGACCATGAAGGAGCGGCAGAGACGAAGCGTTATGGACTGACCGCAGCCCCCATTCCCCGTTCCCCTGCACCGCTCGGGGGGAGGAGGTAGAAGAGGGTGGATGGGGGGAAGGTGTTTTTAGTTTGCTTTTAGTTCTCACTGCTCTAGTCTGTTAGTAATAGGCAATAAATTACATTAATCTCCCTACGCTGAGTCTGTTTTGCCCGTGACGGTAATTGGTGAGTGATCTCCCTGTCCTTATCTCAACCCNTGAGCCTTTTTTCATCGTATTTTCTCCCCCTGTTCCTTTGAGGAGGGGGAGTGAGAGAGCAGCGTGGTGGAGCTTAGCTGCCCATCAGTGTGAAACCACCACA
>GGLTR9#LTR/ERVL  GG000007 5 bp dups; bp 1-205 75-80% similar to GGLTR4; 13% subst @cut @general @gallus
TGTAGGGGAACTGTTAGGTCACGGCTTGAACTGGTGATTGAGCACCTGGTGAAGGGGTGTGGCTGGCCCAGGGAGCACAGGCAAATTGTTTGCACCTGTGCTCCCCACGTGACCAGAAGGGGTGGACCCAGGGTGGAGCCACCCTGGGCTCATATAAGGGCCAGCCACTGAAGGGAGAGCATCTCTTGGACCTAGGCTGCTTCCTGAGAAGGAGTGCTGTATAGCCAGAGAGCCCCTTCACCAGTTGGGTGAGTTCAACTCTTCTTTCTGTATATGACTATTGGCCTACCTGTGAATACTTTGCCTGGTATCGCCAAGAACCTGTCAGAAGCAATTTTGCTTCTTCGTGAGCAGAACA
>GGLTR12A#LTR/ERVL GG000043 5 bp dups; 3' 220 bp 70% similar to those of ENS1-LTR; 5% div @cut @general @gallus
TGTGAGAACCCTTCTTTGTCTTCTGTCTCAAAGCTTGCTTCCTGAGGTATTTCTTGTGATAAGACTCTTAACTGATTTATGGAGGTGGCAAATGATGGGTGCTACCGTGTGACAATCAACATCACTTTGACATTTGAAAGCACCTTCCTCCAGAGCTGCTTGCCTCCGGAAGAGAGTGCTCAGGAGTGGTTACTGGCGGAAGATCTGGCCTAATAGCCCCAGCTTGGTGTGGGAAAACTGGGGAACGACACCATCGTGCCCTGTGAAAAACAGGATGCAGATGGGCATCCCTGCTCCCTCTTATCTGCTGGCAAGGCCCGGAAGATGATAACAAAGGAATTTCTGCTGAGATCCCAGAGCCAGTAGCTGCCACTCCAAGGAGAGCTGACTCAACCACTTCGGATTCGAGCTGTCACTCAAAAGAGAGCTGACTCGACCACTTTGGACTTATAAATAAGTTTGTACTGCCATCGTCGTCGTCGTCGTCGCCGTGGWCACCGTCGTCAACAGAACAACACCCGACGACCCACCACTACTGAAGATCAATGACTGAACTACGAACCACGTTGGACCATGGTGGTGACTATCTCCCTCTTGCTTCCTATANGGACTCCTTGCTTCTATTTCCTATCTTTTCTGTCGCCCTTCTCCCCTTCCCCATCTCCCTGAACGACTAGGATTTGTAATAAACTGGTCGGACCAACATTTGAACCGTTGTTTCTTAATCTCATGCCGGGTATACACACATCAAAGAACCTCCTCTCCCTCCGATAAATTGGAGCGAGACA
>GGLTR12B#LTR/ERVL GG000043 5 bp dups; 3' 220 bp 70% similar to those of ENS1-LTR; 7% div @cut @general @gallus
TGTATGAATCCTTCTTTGTTTTTTGGCTCAAAGCTTGCTTTCTGAGGCATTTCTTGCGATAAGACTCTGACTTAGATGAGAGGTGGGTGTTGCCGTGTGGCAATCAACATCACTGTGTGGACAATTTTACATTTGAAAGCATTTCTCCGGAGCTGTTTGCCTCCGGAAGAGAGTGCTCAGGAGTGGTTACTGGCGGAAGATCTGGCCTGTGACTAAATAGCCCCAGCTTGGTGTGGGAAAACTGGGGAATGATACCATCGTGTCCTGTGAAAAACAGGATGCAGATGGGCATCCCTGCTCCCTCTTATCTGCTGGCAAGGCCCGGAAGATGGTAACAAAGCAGTTTCTGCTGAGATCCCAGAGCCAGTAGCTGCCACTCCAAGGAGAGCTGACTCAACCACTTTGGATTCGAGCTGTCACTCAAAAGAGAGCTGACTCGACCACTTTGGACTTATAAATAAGTTTGTACTGCCATTGCAAATCGTCGCCGTCGTCACCGTGGNCATCGTCAACAGAACAACAACGCCCGACGACCCACCACTACTGAAGATCAATGACTGAACTACGAACCACGTTGGACCCATGGTGGTGACTATCTCCCTCTTGCTTCCTATAAAGACTCCTTGCTTCTATTTCCTATCTTTTCTATCGCCCTTCTCCCCTTCCCCATCTCCCTGAACGACTAGGATTTGTAATAAACTGGTCGGACCAACATTTGAACCGTTGTTTCTTAATCTCACGCCGGGTATACATATATCAAAGAACCTCCTCTCCCTCCGATAAATTGGAGCGAGACA
>GGLTR12C#LTR/ERVL GG000043 5 bp dups; 3' 220 bp 70% similar to those of ENS1-LTR; 9% div @cut @general @gallus
TGTATGAATCCTTCTTTGTTTTTTGGCTCAAAGCTTGCTTTCTGAGGCATTTCTTGCGATAAGACTCTGACTTATCTAGGAGATGAGAGGTGGGTGTTGCCGTGTGGCAATCAACATCACTGTGTGGACAATTTTACATTTGAAAGCATTTCTTTGGAGCTGTTTGCCTCCGGAAGAGAGTGCTCAGGAGTGTTTACTGGCGGAAGATCTGGCCTGTGACCAAATAGCCCCAGCTTGGTATGGGAAAACTGGGGAATGATACCATCGTGTCCTGTGAAAAACAGGATGCAGGTGGGCATCCCTGCTCCCTCTTATCTGCTGGCAAGGCCCGGAAGATGGGAACAAAGGAGTTTCTGCTGAGATCCCAGAGCCAGAAGCTGCCACTCCAAGGAGAGCTGACTCAACCACTTTGGATTTGAGCTGTCACTCCAAAGAGAGCTGACTCGACCACTTTGGACTTATAAATAAGTTTGTACTGCCATTGAAAAGTCGTCGTCGTCAACGGAACAACAACGCCCGACGACCCACCACTACTGAAGATCAATGACTGAACTACGAACCACGCTGGACCCATGGTGGTGACTATCTCCCTCTTGCTTCCTACAAAGACTCCTTGCTTCTATTTCCTATCTTTTCTATCGCCCTTCTTCCCTTCCCCATCTCCCTGAATGACTAGGATTTGTAATAAACTGGTCGGACCAACATTTGAACCGTTGTTTCTTAATCTCACGTCGGGTATACATATATCAAAGAACCTCCTCTCCCTCCTATAAATTGGAGCGAGACA
>(AAAATAACG)n#Satellite  GG000011  @general @gallus
AAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACG
>(ACCCATAGAG)n#Satellite @general @gallus
ACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAG
>(ACCCATAGGG)n#Satellite @general @gallus
ACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGG
>(ACCCATTGGG)n#Satellite @general @gallus
ACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGG
>(ACCCCATAGGG)n#Satellite @general @gallus
ACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGG
>(CCCCATTGGG)n#Satellite @general @gallus
CCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGG
>(CTCTATGGGG)n#Satellite @general @gallus
CTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGG
>(GCCCCACAGCT)n#Satellite @general @gallus
GCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCT
>GGXHOI#Satellite/W-chromosome @general @gallus
AAATACCACTTTTCGCCCGAAAATCACGCATTTTCTCCCCGAAAATACCACTTTTCGCCCGAAAATCACGCATTTTCTCCCCGAAAATACCACTTTTCGCCCGAAAATCACGCATTTTCTCCCCGAAAATACCACTTTTCGCCCGAAAATCACGCATTTTCTCCCCGA
>Z-REP#Satellite/macro Consensus for part (10.5 kb) of a 24 kb macrosatellite. The 24-kb unit, 4% diverged on average from the consensus, is repeated about 830 times in the diploid genome of a female chicken, suggesting that nearly the entire terminal heterochromatin on the Z chromosome consists of this macrosatellite family. Ref: Hori T et al Characterization of DNA sequences constituting the terminal heterochromatin of the chicken Z chromosome. Chromosome Res. 1996 Sep;4(6):411-26. The current consensus contains fragments of interspersed repeats: GGLTR7-int (pos 1-2222), GGLTR5B (4271-4777) and CR1-F3 (5753-5812). Includes recons consensi GG000023, GG000132, GG000131, GG000041, GG000142, GG000205, GG000204, GG000563, GG000562, and GG000397  @erv @gallus
TTCATCGGCAAGATTGGACTATTGTATTTGGATTCACATTCAATTAGTAATCCGAAATCCACAAGTTATCTATGGTTTCTTTTCTCCTTCTCCAGTTGCATATCCTCAAAGGGACACGAAGCTTTACCCTGAGTGGGCTAGCCGTAGCTCTTGCTTTGAACTTAGGGCTGCATTTTGGCTCTACCAGGCATCCCTGATAGCCACACGGCTAAGCATACCTTAGTGAAGATTTCTGTAACTTCTGGGGGTACACCACTGTTTGTCCCAGTTTGTATGAAAGCCAGACTTACCATTTTCAGTCAGTTCATCTTGTTTGACCCTTAGCTCCAGTGTTATTGAATTGACTCTCTGCATCCATTTGTTCTGATGAGTCTTGCCAGAGGAACGGTTTTGGAGAACCTGGCATCTACAGGCATGTATGTATTCCTCCTTATTTTCTCAGCCTCTCTTGAACTGATCCCAAAAGGGAAGCCTTTTCTTGTTGGGCAGTAGCTCCGACTTGTGTTGCAAAATCATCTNCGGGTGGTAAGAGGCACCCGTGCCCACCGGAAACGAAACCTCTTTCTCCTGCTCTCCTAGCTGCAATTTCACCGGTGGATTTGCTAGGAATAACTTCCCAGGTTGCCATTCTTCAGCTTTTGCAATCAGAGACGGTTGGATTTGTGCACCGCTGTCTCATTTCCCTGCAGTTGGCACAGTGCTTTCGGTCCAGCAGGGCTGGAAGCCTCCCCCTCCACGGGCTCTTCCAGGCCCCCCCCCTACCTCTTTCTGAGGGGACCTCTGNGTCCTACGGCTCTACTCTAGCACCGCAACAGGAACAGCTGTTGCTCTTCCCAATGGCCTTACTATCTCTGTTCCTCAATCCGTTTTTTTCCTTTCTCTTGCTCAGCTCTCTTTGGATCTACCACCCTGTTCCACCTTGCTCATCTTGGCCTTCCTCAGCCTGCGTCCTTCTGCAACTTTTCCCTTCCCAAACTCTCATCACTACATAAACAACTAGCATGACATTTCAGTTTCACCTCCTCCTCTCCTCCCGGAGATTTCCAGTGCTAACACTGGAATTTTGGGTTTCCGAGATCTCTGCACATGAAGGCTATTCTCACTGCCAGTGCCCCATCCTCTCCACCTCCCCCCCTTTGCAAGTAACGCTGTTTACAACAGCACTCTCTGTGTGGGGCCGGGGCGGGGGGGGGGTGTGGGGGGTTGCTCTCCTGCCAGTGCAGATACACTCACTTTCTCTTTAACCCTTTTTCCTTTGTCCCCTCTTCATACCCTCAGTTACACTTCCACATACCCTCAGTCATGCTTCTGTTTCCCATTAGCAATTACACTTACTTCTGCCATCAAAACCGTTTGTCCCATTCCCTTCAGAACCCACCAATCAAACAGCACAGTTCTTCAGTGTCCATAAACACCCAGTACTTAGTCTCGTGATGAGAGCACTCCATTCTAACAACTGGTCATGTTACTTCATGGACCTTCCCTCCTTAAGAAGAACAGGAACTGTAAGAAGGTATGATAGTTACGGGTCCCCTTCCGATGCCGCTTCTCATCATCTTCTAACTTCCACATTAAGCACCACTGATTGCAATACTTGATGAGAGTTTCCTTCCTCAGGGTGCCTCCAGGTTCCCCTGCAGTATCCCACCAGTGTGCCAGTGCACATCCCAACGGGGTTTCTTTGGGAATTTCCTTCCCCTGGGAGCCTCCCACGATGTTGACCAAATTCTTCTTGATTCCTCATTTCCTCAGAGTTTCCACAGGCAACCCTGGACACCGCCTACTGATCTTGTTCAGATGTGAACACTTGGATCTCACAGATCTCACAGAAGCCTGTCCACCTTCCTTGACACGCTTCCCCGCAATCAGAAGACAGTACTACGCAAACAGGCTGACACTCATTCCCTGCAAGGAACGCATCTCACTCACACCACACTCACTCTGATCTTTAGAACAAAAGCCATGGTTTCGACGTAATCCACAATGCTGACGACGTCTTTTAGCTGGCATCTTCATAAGGCTAGTACATTAGTCAGTAAGCTTTCAGGTTTCTCTGAAAGTCAGCTGGACCTGCAATGATTAGATACACGGTACGGAACACTCAGCAGATGGTGATAACAATCACACAACCTAGAACTCCCACTACTATCTCCAGGAGAATGCCCGTTATCATTTGACAAAATCCCCACTGTTACCAATCACCGAAGGCAGCTGTGGTCTTTGCAGACAGCCACATCCACGGGGATTGGAGGCTTCTGAACCGGAACCTTGTCTTTCCCGTCTCGTGCCCGCTAAGTCACGTTGTTTGAAAGCAGCACCTTCGCGGCAACCTTGATTTCTGCAGCCTTCTCCGAGCTTTGTGCCACGAGAGCTGTGCCGCTTCTACCTGTGACGTGAGAGCATATGGAAGGCCCTGCAAGAAGTCTGGGTAGGTGATGNCAGTGTCTCTTCCTTTCCCCCCTGGTGCTGGACATAGCCGGGAACGGGAGTGGGGGACATCCCAGCAGTGGGTTCCTACCTCAGCAGAACGGAAGGGCTGTTCCGATGGGTGTATTTGAAGTGGAGTGAATCTGACGCTGATGAGAGAAACGAGGGGCCTGTGAAAAAAAGGAGCGTGCTGCATTTGGTGGTGCAAGATGTTCTGGGAACTGCTGCCAGCAATGCCCAGAAGGCTTCCTTTTTGCTGGGGAGAGCTTTAGCAAGGATTTTTTATATGAAAAGAGTTCATCCTATGTTTCCTTTCCATTGACATTTCATACGACTGCTTGAGAAATTGCTATTTCTTGCTGTAGAGAATGCACATACACCCTGCACTTGTATCTGCACAAAGAATCTTCTAAACATCACTGTCCGTGTTTCTTTTTGGCACTGGGATGGAGCTGTGTGGAACACAGACTTGGATGAACCTTCAGTCAGGTGCAGGGATGCGTAATGCTCATCTAAGATGTCACGCTGACAGCAGCAGTAGAGAGGCAAATTTCATAGGGTGGCATGCTTTTTTTTTTCTTTTGTTTCAGTGATAACCGTGGAAGCATAGAAGCGTTACCCAGACAAAATGGGCGTTTGTCACCTGGGCTTTCTACCAATGCCATAGGCAGTGGAAGTCAGCATCGGAAGCATCCGTGAGAGCCCTGCAAAAGACTGGTGAGAGTTACCCTGGCGGCCTCCTTTGGCAACCTCAGGTCTCTGTAAGCTCTCAAGCTGTGTCGTAAGTCCCCCCGTGGTGCTGACTCAGCTCTCCCTGTCTTTGGTGTAGGAGAGCTGGTCTTGAACTCCTTCCTGTTTCCTGCCTATCATCTGCTCCCTGCTTTGCCCATGGCCCAGCGAGCCTTTTATTCCTCGCCCCCAGATTTGCACGTGTGGATGAGAGCATCTGCTTATGTACGTTTCTTTTCTGCTTGTGGTGTCAGGCTGAGCGACAGCTCCCAGCCGAGCTTGTGGTTAGCGAGACACGGAGTAGCTGGAGATGGAGTTCTCTGTGTCACTAAAGCATGAGCTTGATGGCTGCCGTGAGCCAAAGCGAGAGAGTTTGTGTGTTTGATTTCTGTGTTGGGCTGAGCGGGTAGAGCAGGGCAAGGGGGCTGATTTGGACGTGCTGCTTTCCNAATACGGTGCTGTTTGCGTGGCAGTGCTTCTGGCGTTGCAAATTGTGTCAGATGTCAATGAATTCCTTGGAATCTGTTGAGTTGACTTGTGCAGGTTTCATTNTGGAGCTGAACCCTTCCTGGCCGCTTCTGTGCATAGCCATGGCCTTTGCTTCTTTCTTGCCTTTTTTTCTTGGTTGCGTTTGGCACTGTGCAAGCCGTGAATTGCCAGGGAAGAGCTGGAAGTGCTCTGGAGTTGTGGGGGACAAACTCCTAAGAAACAATGTGCAGCTTCAAAGCCCCAAAGTTTGGAGAGATGAGAGATGCGCTGCCTGGTGCAGGACATGATGCGCTCTGCAAGGCGCTTTCCATGAAGACCTCAGATCTGCGCTCAAACTGCATCCAAAGCAACCCAATGCCCCGTGCTTGTTGTACCCGGAGGTATCGGTGCCAGGAGTTGCTGCTGTGTTTGCCGTGCCATTGTGTCGGCAGGGTGACGTTCATGGGGTCCAATGCCCTCAGTCATTCAAAGCATCCTTGCAGATGTTCCTAGTGAGGGGCATGTTTCATTGACACCATAGGTTGTTTTCTGGAAAATGAAAGAGTGGGCTTGCGTACCTCCAGATGGTTTTCATTTCCTGCTGACCACAGTGCACGTCACGTCTGCTGCCATTGCCCCGCGGCCCTGTTGTGGTTTAAGCCGGTGGGTGGCTCAGCACCACACAGTCCTTTGCTTACTCCCCCCTTCCCGGTGGGATGGGGGAGAGAATTATGGGGGAAAAAAAAAGAAGGTGGAACTCATGTGTTGAGAGAAATCTCTTTCCAAAGGTAGAGAAAAGGACAGAAGTAATGGATGCACGCACACACACACACACACATATATATATATGAATGTATGTAANAAGTGATGTAGAAGCAGTGGCTCAGCACCTCCCAAGCAATGGGCAAGCAGAGGAAGAGAGTGAGATGAGCTCCCACCCCGTCCATAACCCCTTCCACTTGATGTCATATGGTATGGAATATCCCTTTGGCCCGTTGACATCAGCTGTCCTCATTTGGTTTCCTCCCAGCTCCTTCTTGAGAGCTTTGCTGAGAACGGCCTTGGCTCTGTCCAGGTCTGCTTCTCAGAAACTATAAACACGAGAGTGTTCTCACTGTTGTAGCATCATAGCAGACACTGAAGAAAAATGGATCCCACCTGAGACTAAGACAGCCCCCCAGTGTCCGTGCAGCGAGCCGTGTGGGGCTGCAGGTCGTGCATTTCCCTGGCAGCATTGGCCAGGGGTGCTGGGGAGGTTTGCGTGCTCAGCTTGGGCATCGCGCTGCTGTGCCTGTCAACACAGCATGCTTCGTGCTCTCCGAGCAGCAGAACAGCGTTTCATCAACAAGGTGCCGTAATATTTACTGGAACCAGATGCATTTGTGTCTCTGAGGCTGGGTTTACCCNACGAGCTCTTCTCGAAGGAGCTGTTTTGATTCCCTTTGTCCGTGTGCGAGCGGAAGCGCTTACCCCNCTTGTGTTCTGTCCCTCGGTATTACTCTTGGTGGGCAGAAGGAGCTGGTGGATTCAGCAGCAGTAGATTCTGTTGGTTTCCTCTNTGCTGCTTCATCCCTGGAGCTCGCTGCTGCACGGAAGAGTACAGGCGTGTTTATCCCAGGGCTGCTGTAAAGGGGAGCCCGGTTGGCGTAGCAGTGAGCAGCAGCTAACGGGCTGTGCAGAGGAGGGCTTTGCAGAAGGAGCAGGAGTGCCTGCGTCCATCTGTATCCTCGGATACGTTCTGGCAGTGAGGCAGCAGCTGTGGCCACAGTGACTGAATGCAGACTTGGCCTGGGGCTGCCACGTGGCGCTTCCTAGCCCGCTAGTATACCTGGCAAAGCACAGCCACCCTGCACCCAGGGCAAGCGTTTGTCTTAGTGTCATGTTTCATGCTGTCTTGTGAAGCTCAGGCACTGGGGGCAGCTTCCCCCCAAAGAAAAGGAGGAGGAAATGAGGTCGTCATGGAAGCCAAAAGGCAAAAATGCGCTCGGGAAAGAAATTGGCAAAGCAGTCTGGTAGTAGTGCTGTGTTTCTCTTCCTTTATTTCCATCCAGGTGAAAGAGATGGCTGCTCTAAGCCGCCCTTGGGTGCAAAGAAGGACCCTAGTGTGGATTTGCCATAGGCCCAGCAAGAGGCTCAACAGCACCAAGCGCCGGGTCCTGCACTTTGGTCCCGCCAACCCCATGCCAGCTTCTCCAGGATTTGGCTGGGATGGAATTCCAACCACGCACTGATTTCTCGAACGCTGGGGTGCCCTTTTGGAATCCTGTGGTCTTGTGACGTGGTCTTGCCTCCCCACCTTGTCCGTCCATGGTGGAGCAGCCGGGTGGCCCTTAGTGATGTCATAAGCGGCTAGAATGAGGGGAGGAGCAGCGCGTGCTGCTTCCCTTCATTGGAGCGCTTGAGCTCGGCGTGAGTACGTGGCTTGTTGCACTTGTGCATCGACTGAGTCCGTTCGTCTTCATCCCGTCTTGCGCAGCGCCTTGTAGGTAAGCTGAGACGGTGCGGGATAGACGGGTGGGCAGCGAGGGCTTGAGAAGTGCTGGCTGGCGGAGCTCCTAGGATCATATTGCTTAGTCTGGACCGTCAGANGCCATTTTCCCCCAGGCCATCCATTCCAAAGCCATCCATCAAGGTGGCATTTGTCCCACGGTTCTTCCCTCGTTCTTCCCTTTGCTNAATTGTGCAGGCTCACTGACCTGCTCTTTCTCCCTCCCCTGCCCACCCTCCGCCTGCTCCCTTGGTGCAGCTTTTGCTCGCGGAAGATCAGAGCAAAGTGACAAGGAACGGCTGCGGGTTCGAGGATCTTCTTCTCCCTTGTTCTGATCTCTTGCCAGGTACGTGCCACGTTTTGTNCCGCCACATGGTTCAGCAGCCCGTGTTTAGTCGCACCGTGTGTAGTAACACAGCCTCGTCCAGCTGGGATGCGGCNCTGGTCACGTGTGGGTTTTTTCCACTTCCCCTCCAGCTCAGCCCTCGGCAGGATGCTGCCTGTAGTGCTGGGAGCAGCTAGTGTGAAGGAAGGCAATCCCTTAGGCAAAGAGCCCTAGCCCCAGTCTGTGCAGAGCTGCACAACATGAGCCAGGGGCACAAGCGTGCATGCTTTGGCTGTGTGAGTGTGCCCGACAGCTGTAGGGAGCACAGCGGGCATGCAGGCAGAGGAAATGCGTGGGCAAGGCTGCGGCCGGCGCTGGTGGTGAGGCTGCTGCTGGGAGCCGGGGGCTGGGGAGCAGCTCCAGCCCCAGCAGTGACACCTCTCCCTGGCCTGCTACTGCGCTCTCAGCGTGCTGCGGGCAAATGCATCTGCTGCTTTGTGCCAGAGTCCCCATCTGCTAGCAGAGGGACAGCGACTTGGTCCAATGCTGCGTATTGCAACGGCTGTCCCGTTTGAATAGACTGCACANAGTGGTTGTTTCTAGAACACTGCCTCCGCCAGTGGGCAACTGAGAGTAGTTCTGAAGAAGNCTCTCGATCCAGTGCTGTGTGAGCACAGGAAATGTGTTTCTTTTCTGTTGCAGCTTGTCGCGCCTGCTGTGATGGGCATCGCGAGCAGCGAGATCAGCCGTGGGCCTGACCGGGCGTTGACGGAGGTACAGTGTGAAGCTCTGCTTGGTCTCTGTTCCCTGACTTGAGCCAGCAGAATGAGCCACCGGTGTGCTCTCCTGCTTTTCAAGAGAGAGAGCATCCTTCCGGCTCTCTCGGTGTCCCTGAAGAGCTGCCTTAAAAGCTTCATTTCCTTGCTAGTGGCATCGAGATGGCACCCTGAAATCCTCCTTGTTTGTCCTCAGCTCCTCACCATGGCCTGTGCTCTCTGTTTCAGCCTGAGAACCAGGGGAAGCCCTTGCTGGTCCGTGAGGAGCCATCTCTTAATATTCCGGCTATTGCTGCTGGCCATGTTATTAAGAGATACGTTGCCCAGGCAGCGGATGAGCTCTCCTTGGAGGTAAGCAGATAAAGAAGGCGTTCCTTGTTGTCACGGCCAGAAGAGTATACCGTGTGAATGCATCAGGAATATTCTCAGACACCTTCAGAATGCCTTGTGAGGCGAAGCCCAGAAGATGCAGGTCCAGATAGGACTTGCACTGGGTTGGATGCAGGGAGGAGTTCAGCCATGTCTAAAAGACGGTTTCATTTGGCATGCTTGCACTGTATTCTGTCTGGTGTGTAAGGCAGTGACTCTTGTACCTCCAAGCCCAGCTTTCCGACGGGAAATGCCTGAAGAGCTGCCCCGGTGCAATTGCTCTCAAGCTGTGCGCTCTTTGGCAGTGCAGAAGAAGGGTGCCATTTCAGCTGTGCTTTCCTCCCAGCTGTGCTGACGCTGGGATTGATGTTGCAATGTCTTGCAGGTGGGAGACCTGGTGTGCATTACTGCTATGCCAGCAAAGGAGCAGAGCCCCTGGTGGAGAGGCAAGCGTGGCTTTCAGGTAGGCACAAGCTTCAGACTCCTGGGCGCAACTGCAGTCAAGTCAGGAACGTCAGCTTCGAGCTGCTCGGCCTGCACAGGGTGGCTTCTGGACGTCAACAGTTTCCCTGTGTCGCTGTCAGAGGCCTTTCCCTTTGGCTCTGGGCTTGGGTGGGAAACCGTCTCCTCATGTGACTTAGAAGCAAGAGCCTCTCGTGCTCAATACGCAGTCAGGAGTTGACCATCTCTGTCCTTTGTACAAGCACGGAGGACAGAGCCATCTTNTGCGGAACCGAGTATTGCTTTTGTAGGTCTTCTGGCTGCAAATGTTGAATGAGGGTTACTTTTCTGCAGGCCATTCTTTCTTGGTTGAACAGTTGAGGCCTGAGAAACGCTGCATTCAGTATTCCATCCCTCTTTTTGTTCTTGTTCCAGGTTGGGTTTTTCCCTGGTGAGTGCGTGGAGCTCATTAACGGAAAACTTCCTGAGGCCCTCATCAATTCAGCGCCAAAGCCAGGTACGGATGTTACATGTGATGGCGCGGGGAAGTCAAATGGAGTCTTTTTCTGGGTGTGTTCTGTGTTGAATACCTCCTTTATCCATCCCACGTTCTCCTCTGTGTTGATGATCCTTCCTGCATCCCACGGGGCGTAGGGCTGCTGTTTTGTAGGCAGTGAGAATGAGGGCTTGGGCAAATGCTCGAATCCTTGTAGAATGCAGTGTTGGCAATGTTCTTGCCGCTTTNACGTGCTCTGTAGAATGTGTTTACGCTCAGCCTGGTCCCACTGAGCCCAACCTGAAATGAACTGGTTTCTTCCTTTTGTTGTGCAGTGCCAAAGAAGCGTGGCAAGCTCCTCAGCTTCCTTCGTTCCTTCGCGAAGGCCCGCCCAAAGGAACCGAAGCAGCGGGAGATGGAGCTGGAGAAGGAGAAGGAAGGGGTGTTTGGCTGTGACCTGGGAGAGCATCTTCTCCACTCTGGCCGTGACGGTAAGGAACAGCCCGTTCCTGAGAGCTTCCTCTGTTGGGCATGTAAAGATGAAAGGGAGATCATCTCTGGCAAGGGGCAGGTTGATAGCGGTGGAGAAAGGTGAGGTGGGAGTTGATGGCTGAAAGGTAAGCTGAGGCTAATGCCCATAGGAGAGCAGCCCACTTGTATTTGCTTAAAGCAAAAGGTGTAAGCCAATGCCACGCTAGCCTGAAAACAAAGGCAGCCTTTTGGCCCAAGAGAGTGTACTGCGTCAGTTTCCTAGCTCTTCTGGACGTGAGGTCTCACGCCTCCATTGCGGTGGGAGCTGTGATGGGACTTGCAGTGTCTCTGGCTTCCCCAGAATTACTTTCTGCAGGCTGGTTGGCAGGTCCTGGCATTTCTGGAAAGCCAAGAACACGTCTGTGTCCAGTTTCCTCCCCGGCTCCTGCCTGTCAGAGACGTCTGTGCCGGCTTTCTTTCTCCTCTAAGGAGGAGGCATGCAGTAGCGCGGCTGGGCTTAGTGGATGGGATGTGACAGGAGCAGCGGCTGAAGCAGGACTTGAATCAGGAGCTCAGCTAACCGCTGGCACTTGTTCCGTAGTCCCCCAGGTCCTGCAGAGCTGCGCTGAGTTCATTGAGCAGCACGGCGTGGTGCAGGGGATCTACCGCCTGTCCGGCGTGGCGTCCAAGATCCAGAAGCTACGGTAAGAGTGCTGCGACTGACACAGCTGTCAGTAGGGGCACGTGCCATGCTGCGGGCGTTCCGAGGCCTGCGCTGTGGGGCAGCTGTGTGCAGGCAGCGTGCGCTCAGCGGTGGTGCGCCAGGCTTGTGTCTGTTTGATAGGAACACGGGGCGTTGAGTAGACTTGCTGGGGCAGGAAGTTCTCCTTCAGTCCTTGAGAGCATTGGAAGGCTGTGGGGGACTGCGGTGTCAGCTCTCATTCCCGTTTCCTCTTGTTGGCAGAGCCCTTTGGAGCAGCCCGCACTCCTCCTTGCTGCTCTGGGCTCCTGGCATGTGATTGTGGAGTAGGCAGCCAGTTGTCAGAGCGTTTCTTTTCTCCTGTGAATCAGGAACCCCTTCCTTTTCTNGACTGTATCGTGTATTGCTTTGGACTTGTCTTCCTCTTTCTCAAAGCCCNNTGTTTTTGTGTCCTTCTCTCCAGCCATGANTTTGAGTCNGAGCAGATTCCGGAGCTNANCGTCCGGGACGTTCACAGCGTGAGCTCCCTGTGCAAGATGTACTTCAGGGAGCTCCCGACCCCTCTGCTGACCGAGCAGCTGCATGGCAAGTTCTCGGTAAGCACAAGGCAATGGCCTTCATGTCCCTCTTCCCTGGGCCTCTTGGCATGGCCTGTCNCATA