>Charlie12_GG#DNA/Charlie GG000088, GG000054, GG000052 Typical Charlie NTCTAGAN target site duplications. 80-85% identical at DNA level to mammalian Charlie12 element over pops 346-2241. Interal deletion products appear to have a few substitutions compared to the autonomous elements. 15% subst @general @gallus CAGGCATGTCCAACCCGCGGCCCACGGGCCGCACGTGGCCCAGCNCAGCCCGTCCTGCGGCCGCCCCCTGCCCCGCGCCATCATGGCGGCGGCTCTTCCCCGCCGAGCGGCCCGGCCCGGCCCCGGGCGCGCACCCATCGCTCAGCAACAACCAAACATCGGTGTGCNATTAGCACTGTCTGAGCTGAAACCAGGACACGGGGAGGGCGCAGTGCAGTGCTGACTCCGCCTCTCACGCCCGCCACACACACTCAGTCGNATCGAAACCCGCGTGTATTACACGTTACATGCGCTTGTGCCGCTTGNTGAGTAAAACGCAGTGATTGCCGATANTAATATTTCAACCTACCTAATGNCATCTCAAAAGAAAACAGAACCCAAAAAAAGAAAAATCGTGGATGAAGGAAGAGTGTTCAACGAAAAATGGACAGATGAGTACTTTTTTGTCAAGACAAATAATATGGCACTATGCTTAATTTGCAAGGAAATCGTGTCAGTTTTCAAAGATTACAATTTGAAAAGACATTATATGCAGAAACATGCTGCCAAATTCGATGCATATCAAGGAATGCTTCGTAAAGACAAAATAGCGGAACTGAAAAAAAGTCTGTCATCTCAACAAAATCTTTTTNAAAAAGTTAAAACTCAAACGGACTCTGTTATAAAAGCTAGTTACGTGGTAGCAAATCTGATTGCAAAAAAATCAAAACCATTTACTGATGGTGAGTTTATTAAGCAATGTATGGAAAGCATGGCAGATATAATGTGTCCTGATAAAAAAAAAACGGATTTTTCTAAAATCAGTTTGTCTCACCAGACTGTAGCCAGGCGAACTGAAGAAACAGGAAAATCTATCGAAAGAAATTTGGAGAGTAAAGCTGCTAATTTCAAATTTTATGCTTTGGCGATAGATGAAAGTACTGATGCTACAGATACGGCTCAACTTGCCATTTTCATTAGAGGTATTGATAACGAATATAATGTCACTGAAGAAATGGCTTCTTTGGTGCCATTAAAAGACACAACTAAATCTCTTGATTTGTATGAAGCAGTAAAAANTACATTAAAGCGATTTTCTTTAACCTTTGTCAACATATCTGGTATAGCTACTGATGGCGCCCCGGCGATGGTTGGTAAAAAAGAGGGACTTATAAAATTAATAGAAGATGATGCAATTGCCACCGGCAACTCACGTTTGATGAAATATCACTGCATCGTACATCAAGAAAATTTATGTGCGAAAGCTTTAAAAATGGATAATGTCATGCAAATCGTCATCAAAGCTGTGAATTTCATAAAGTCCAAGGGACTGAATCATCGCCAGTTCCAGGAGTTCCTTAAAAGTATGGATGCTGATTATGGGGACATCATTTACTTTTCTGAAGGAAGGTGGCTAAGTCGGGGTAAAATGCTAAAAAGATTTTATGATTTGCGAAATGAAATCAAGTCNTTTATGGAATCAAAAGGAAAATTTGTGCCAGAACNTGAAGATNAAAAATGGCTCACAGATTTAGCATTTTTGGTGGATTTGACCGCTCATTTAAATGAGTTAAACATGCGTCTTCAAGGTGAAAATCAACTTATCTGTGCTATGTTTCAAACCATAACAGCGTTCGAAATGAAACTTAAATTATGGCAAGCTCAAGTTATGGCAAATAATTTCATGCATTTTGATACGTTGGCTAAACACAGTCCTGTGAACAGCGAAAAATATGCAGCCGTGCTTTCCGTTTTGATAAAGGAATTTGAGAATAGGTTTCAAGATTTCCGAAAAAATCATCNATTTTTTTGTATATTTGCGACTCCATTTTCAGTCGACATAAATACATTACCTGCGAATTTTCAAATGGAATGTATAGAGTTGCAATCAGACATTCAACTCAAAGAAAAATTTGATCATGTCTCTTTACCAGACTTTTATAAGACCTNTCTTACCAGAGAAAAATATCCCTCGCTTCACAATCACGCCTTATTCATGTCATCGCTTTTTGGCAGTACGTACATTTGTGAACAACTGTTTTCAAGGATGAAGCACAGGAAGAGTAANATTTCATCAAAAATCTCTGACGAACACCTTGAGAACTCACTAAGAATTGCAACCACTNCCATCGAACCAGACTGATGCATTAGTTTCACAAAAACAAGGTCAAATATCCCACTAGTTTTATGTTTTTGTTGCTCTCTGTTTTTTATGTTTTAATAAAAAATACATTAAAAATAAGTTTTGTTACTTATATACATTAACTATATTATATATTTTATATGCGGCCCAAGACAATTCCTCTTCACTCAGTGCGGCCCAGGCAAGCCAAAAGGTTGGACACCCATG >Charlie12_GGa#DNA/Charlie Nonautonomous deletionproduct of Chap1_GG, with a ~1700 bp deletion at pos 233. About 80% identical at DNA level to Charlie12 in human genome. 16% subst level. @general @gallus CGCCCGGGCATGTCCAGCCTGCGGCCCACAAGCCACATGCAGCCCAGCCCACCACTGCGNGCTGCCCCCTGCTCTGTTATCGCGGCTGTGGNTCTTCCCATCTCAGCGGGCCAGCCCAGCCCCGGGCGCGCACCCATCGCTCAGCAACAACCAAACACCGGTGTGCGATCGGCGCTGTCTGGGCTGAAACCAGGGCATGGGGAGGGCGCAGTGCAGTGCCGACTCAAGTGATGGCAAATAAGTGTATGCATTTTGATACACTGGCTAAACACAGTCCTGTGAACAGCGAAAAAAAACGTGCAGCTGTGCTTTCCGTTTTGATAAAGGAATTTGAGAACAGGTTTNAAGATTGCCGAAAAAATCATCAATTTGTTTATGTTTGCGACTCCATTTTCAGTTGACATAAATACATTACCTGCAAATTTTCAAATGGAATGTATAGAGTTGCAATCAAAAATTTGATCGTGTCTCTTTACCAGACTTTNATAAGNCCTCTCTTACCAGAGAAATATCCCTCACTTCACAACCACGCCTTANTCATGTCATCGCTTTTTGGCAGTACGAACATTTGTGAACAACTGTTTTCAAGGATGAAGCACAGGAAGAGTAAAATTTCATCAAAAATCTCTGACGAACACCTTGAGAACTCACTAAGAATTGCAGCCACTGCCATCGAACCAGACTGATGCATTAGTTTCACANAAACAGGGTCAAATAGCCCCCATGATTTTATGCTTNTGTCGCCCTCTTTTTTAAATGTNTTTAATATTAAAAAAAAGTAAGTTTTGTTACTTATATACATTAACTATATTATATATTTTATATGCGGCCCAAGACAATTCCTCTCCACTCAGTGCGGCCCAGGCAAGCCAAAAGGTTGGACACCCATG >Mariner1_GG#DNA/Mariner GG000016, GG000051 TA dups ORF from pos 136-1221 encodes protein 43% identical (59% similar) to a mariner transposase found in the lacewing (gi|600833|gb|AAC46945) 17% subst @general @gallus CGAGGGCTGCTCCGAAAGTAATGCCTCCTATTTTATTATGTTGGCCCACGACGTCAGAGGCGGATGTTGGTGGTATGGCAGTAGAGGCTGAACCTTCCCACCAATATTCCGTTACATTTTGTTGCCGTGCGACAGATGGCAGCAGAGGGGCAGTCTGACAAAATGGCGTCTGACATGGAAGTGCGTATGAAGCAAAGGTGTGKCACTGAATTCCTCCATGCGGAAAAAATGGCACCCACTGACATTCATCGACGCTTGCTGAACGTTTATGGAGACCAAACAGTGGATGTGAGCACAGTGAGGCGGTGGGTGGTGCGTTTCAGCAGTGGCGACAGCGACGTGAAAGACAAGCCACGTTCCGGACGGCCATGCACAGCTGTCACACCACGAAATGAAGAGCGTCTCGATCAGCTCATCCGCGCGAATCGGCGGATTACGACCAGGGAACTGTGTACGGAGCTGAATATCGGCTTCAATGCATTGGAAACGATGGTGGCAACGTTGGAATATCGCAAAGTTTGCGCCAGGTGGGTCCCACGAATGCTCACACAGGAACAGAAAGAACACCGTATGCAAGTTTGTCAGGACCTATTGAACCAATACGAGGCTGAAGGTGACAGTTTCCTGGATCGCATCATTACCGGTGACGAGACGTGGTGTCACCACTACGAGCCGGAGTCAAAACAGCAGTCCATGGAGTGGCGACATGTGAATTCCCCATCGAAGAAAAAGTTCAAGACGCAGCCCTCAGCGGGTAAAGTGATGTGCACTGTCTTTTGGGATAGGAAAGGGGTGATCCTTCTGGATTTCCTGGAACCCGGACAAACCATCAACTCTGACCGCTACATCGCGACGCTGACTAAGCTGAAGGCTCGAACTTCCAGAGTCAGGCCAGAGAAGAAGACAACCTTTCTCTTGCAACACGATAACGCCAGGCCCCATACCAGTTTGAAGACCGTGGAGCACATTGCCAGTCTTGGCTGGACTGTCCTACCACACCCACCGTATAGTCCGGATTTGGCGCCTTCTGACTTCCATCTGTTCGGGCCGATGAAAGATGGACTGCGTGGGCAACATTTTCCTAGCAACGACGCCGTCATAGCAGCTGTGAAACAGTGGGTCACCTCCGCTGGTGCAGATTTTTACGAGCGCGGCATGCAGGCTCTTGTTCATCGCTGGCGAAAATGCATAGCTAATGGTGGTGACTATGTTGAAAAATAGTGTTTTGTAGCTGAGAATTTGCTCTATCAAATAGTGTTATTGTGCTCTTTGTATCTGTTGTAGTTTCCATGGAAATAAATAGGAGGCATTACTTTCGGAGCAACCTACG >Mariner1b_GG#DNA/Mariner 33 bp TIR, TA dups, 14-15% subst level, surprisingly common (expect ~ 20,000 in genome) Deletion product of Mariner1_GG (misses bp 370-1134) @general @cut @gallus CGAGGGCTGCTCCGAAAGTAATGCCTCCTATTTTATTATGTTGGCCCACGACGTCAGAGGCGGATGTTGGTGGTATGGCAGTAGAGGTTGAACCTTCCCACCAATATTCCGTTACATTTTGTTGCCGTGTGACAGATGGCAGCAGAGGGGCAGTCTGACAGAATGGCGTCTGACATGGAAGTGCGTATGAAGCAAAGGTGTGTCACTGAATTCCTCCATGCGGAAAAAATGGCACCCACTGACATTCATTGACGCTTGCTGAACGTTTATGGAGACCAAACAGTGGATGTGAGCACAGTGAGGCGGTGGGTGGTGCGTTTCAGCAGTGGCGACAGCGACGTGAAAGACAAGCCACGTTCCGGACGGCCATGCAGATTTTTACGAGCGCGGCATGCAGGCTCTTGTTCATCGCTGGCGAAAATGCATAGCTAATGGTGGTGACTATGTTGAAAAATAGTGTTTTGTAGCTGAGAATTTGCTCTATCAAATAGTGTTATTGTGCTCTTTGTATCTGTTGTAGTTTCCATGGAAATAAATAGGAGGCATTACTTTCGGAGCGACCTACG >CR1-B#LINE/CR1 4% (was B1a, B', CR1-GG) ORF1 228-1490, ORF2 1493-4465 119k @general @gallus TGCGACAACAGAGCGGTCACAGCTCTCAGCCGGGCAGCTCTCATGAGAGCGGCTGACGCGGCGTGACATTGCCAGTGGCAACGCCTCTGTATCCATGCCCACCTGCCTAGAAAAAGCCTTTGAGAGGGCAGCGATGTGTCACTGCCCATCAGAGACGGAGAGGAAGAGTCGGGGTGTGAGATCCACGTAGGCTGTTTTAACAAGTGTTACTGAGCCTGCTGGTTGCCATGGGTGCACCCCAGTGGAAAGTTGGTGTCACAAAAACTGTGGAGACCCAGGCAGAGGTCCCATGCTCAAGCAGGAGGAAGACAGTAGCCAAGAAGACTGTAGACAGCCAGACTGAGGACCTGTGCATGCACGAGAGGAAGGCTGATGGTAAGATATGTGTGGTGACTCAGATTGAGGTCCCATCACGAGATGCTAGTACACAGGTCACTGGCTGTGTTGACTGCTGGAGCCTGGCCTTTGCAGTGCCAGACGATGGAGGCCGCACTTGCATAAGATGTGACCAACTGAACGACTTACTCAGCCTTGTGATTGACCTGAAGGAGGAGGTAGAGAGGCTGAGGACCATAAAGGACTGTGAGAGGGAGATTGACTGGTGGTGCCAGTCCCTATCAGCCCTGAAATCTTGGCACACAGCTGAAGCTCTGCATGGAGCATGTCAACCCCTGCCGCCTTGCAAACAGGTGGTAGAAGGGAACCGGCCAGCAGACGGTGCTGCAGTGAGCTCCCTGTCCTCTCCTCCCCCTAGCAGCAATTTGAGAGAGGAGGAGGAGTGGAAACAGATACCGGCTCGGCGAGGTGGGCATCCCCCATCCCGACCATCCTCAGCTCCCCAGGTGCCTCTGCACAATAGGTTTGAGGCCCTGGAACTTGAGGGAGGGGTGAGTGAGACTGTGGAGGGAGGTCCACCCGTGAGGTTGCCTCGGGTGAAGCGGTCGACCCCACACCTCACGACTGCCTCCACCCGGAAGGACAGAAGGGTAGTTGTCATAGGTGACTCCCTCCTGCGAGGAATGGAAGGCCCTATATGTCAGCCTGACCCTACCCGTAGGGAGGTGTGCTGCCTCCCTGTGGCACGGGTCAGGGACATTTCAAGGAAACTTCCTGGACTGATTCGCCCTTCTGACTATTACCCCTTATTGATAATTCAGGCTGGCAGAGATGAAATTGCTGAGAAAAGCCTGAGTTCTATCAAGAAAGACTTCAGGGGACTGGGGCAGGTAGTTGATGGAGCTGGCGTGCAGGTGGTTTTCTCTTCTATACCTTCAGTGGCAGGAAAGGGTACTGAGAGGATCCAAAAAACCCACCTCTTAAATAAATGGCTCAGAGGTTGGTGCAAACACAGGAATTTTGGTTTTTTTGACCACGGGGCAATTTACTCAGCACCTGGCATGATGGCTGCAGATGGAAGTAGCCTGTCTCTGAGGGGTAAGAGGATCTTGGCTGAGGAACTGGCAGGACTCATTGAAAGGTCTTTAAACTAGGTATGAAGGGGGAAGGGGACAAAACGAAGGCCACTGGGGTTGAGCGGGTCGTTAGAGGGCTCGTACCAAACTCCATGGGCAAAGATGGTGGAGTACAAAGGAATGGAGTAGGGCAGGGGGATGCTGGGAATGCTACTGTTCTAGGGGATCCTAGATCCCCTATAAAGGCGGTGAGATGGAAAGCCCAGCTGAAGTGCCTTTATACCAATGCACACAGCCTGAGTAATAAACAGGACGAGTTGGAAACTGTGATGCACTTGGAAAGTTATGACCTTGTTGCTATCACAGAAACATGGTGGGATGACTCCCACAACTGGAATACTACCATTGATGGGTATCGGCTCTTTAGAAGGGATAGGCGAGGTAGGAAGGGTGGGGGAGTTGCCCTCTATGTCAAAGAGTGGATAGACTGTGAGGAGCTCCCTCTGAGAAACAGTCAGGAACAGGTCGAGAGCCTGTGGGTTAGAATTAGGGATGGGACTAATAAAGGTCAGCTGGTGATAGGGGTATACTACAGGCCACCTGATCAAGGGGAGGCTGTTGACGAGGCTTTCTTGCTCCAGATGTGGGAGGCATCGTGCTCACAGGCCCTCGTCCTGGTGGGGGACTTCAACCATCCGGACATCTGTTGGAAAGACCACACGGCGAGCTGCAAGAGGTCCAGAAGGCTCGTGGAATGCATTGATGACAACTTTCTGGTCCAGGTAGTGGACAGACCAACCAGAGGTGAAGTGTTGCTGGACCTGCTGCTCACCAATGCGGAAGAGATCATCAAAGGTGTCAACGTTGGAGGCAGCCTGGGCTGCAGCGACCATGCCCTGGTTAAGTTCATGATCTCAAGGGATGTGGGCCTGGCAAATGGTGGGGTCAGGACCCTGAACTTTGGAAGAGAGAACTTTAAGCTGTTCAATGGATCGTTAGCCATGATCCCCTGGAATGCTGTCATTAAAGATAAAGATGTTGAGGAGAGCTGGCTACTCTTCAAGGATGCCCTCCTGAAAGCACAAGAGGTCTCCATCCCTCTGAATAGGAAAGTGGGCAGACGAGATAGGAAACCAGCATGGCTCGGCAAGGACCTGCTGGGCACACTGAGGGTGAAGAAAGGTGCGTACAAGCTCTGGAAACAAGGGCGTGTCACCTGGGAAGAGTACAGGGATGCTGTCCGGACTTGCAGACGTAGGATCAGGAAAGCCAAGGCGCAGGTAGAACTGAACTTAGCGAGGGATGTGAAAAACAATAAGAAGACATTCTACAGGTACATTGGCCAGAAAAGACAGACCAAAACAGGTGTACCTTCTTTAGTAAACTTAAAAGGAGAACTGGCTTCAACGGATGAAGAGAAAGCGGAGGTACTGAATGAGTTCTTTGCCTCAGTCTTCACTGGAGGCCAGGATTCCAGTCTTTCTCACGTCCCTGAGCCCTGCACCCCCAAGCCTCCAGGTGGGGACCAGGGGGGTAAATCCCCCCCCACACTAAGGGCAGAGCAAGTCCGAGACCGCCTCATGAGACTGGATGAGTACAAGTCTTCAGGGCCGGATGGTGTGCATCCCAGGGTTCTGAAGGAGCTGGCTGAGGTGGTTGCTGAGCCACTCTCCATCATATTTGAGAAGTCATGGCTGTCAGGCGAGGTCCCAGATGACTGGAGGAAGGGTTACGTCACTCCCATTTACAAGAAAGGGAGCAAGGAGGACCCAGGGAACTACAGGCCGGTGAGTCTCACCTCTGTGCCTGGGAAGATCATGGAACAGATCCTCCTGGATGACATGCTCGATCACATGAGGAATGAGCGTGTGATCCGAGACAGCCAGCACGGCTTCACCAGGGGAAGGTCATGCTTAACCAATCTTGTGGCCTTCTATGATGGAGTGACGGCGTTGGTGGATGAGGGGAAGGCGACCGATGTCATTTACCTGGACTTGACCAAGGCCTTTGACATGGTCCCCCACCACATCCTTATCTCCAAATTGGAGGGATGTGGATTTGATGGGTGGACCACTCGTTGGATAAGAAATTGGTTGAAAGGCCGCAGACAGAGGGTGGTGATCAATGGTTCTATGTCCAGGTGGAGGCCGGTAACGAGCGGAGTCCCCCAGGGGTCTGTCTTGGGACCGGTGCTCTTTAACATCTTTATCAATGACATCGACGATGGAATCGAGTGCACCCTCAGCAAATTTGCTGACGACACCAAGCTGAGTGGTGCGGTTGACACGGAGGAAGGAAGGGATGCCATTCAGAGGGACCTTGACAGACTTGAAAGGTGGGCCCGGGTGAACCTAATGAGGTTCAACACGGCAAAGTGCAGGGTTTTGCACTTGGGCCGGAGGAACCCCAGGCATCTATACAGACTGGAAGGAGCAGTCCTTGAGAGCAGCTCTGCAGAGAAGGACCTGGGGGTCCTGATGGATGACAAACTTAACATGAGCCAGCAGTGTGCTCTTGCAGCTCGGAAAGCAAATGGTATCCTGGGCTCCATCATGAGAGGGGTGGCCAGCAGGGACAGGGAGGTGATTGTCCCTCTCTACTCTGCTCTTGTGAGGCCCCATCTGGAGTACTGTGTCCAGGTATGGAGCCCCCAGTACAAGAAAGACAGAGAGCTGTTGGAGAGGGTCCAGAGGAGGGCCACAAAGATGATCAGGGGGCTGGAGCACCTCCCCTACGAGGACAGGCTGAGGGAGCTGGGCTTATTCAGCCTGGAGAAGAGAAGGCTGCGGGGTGACCTCATTGCAGCCTTTCAGTACCTGAAGGGAGCCTATAAACAGGAAGGGAGTAAACTCTTTGAAAGGGTAGATAACAGCAGGACAAGGGGGAACGGTTTTAAGTTGAAAGAGGGAAGATTTAGGTTGGATGTTAGGGGGAAGTTCTTTACCAGGAGAGTGGTGAGGTGCTGGAACGGGCTGCCCAGAGAGGTTGTGGATGCCCCGTCCCTGGAGGTGTTCAAGGCCAGGTTGGATGGGGCCCTGGGCAACCTGGTCTAGTAAATGGGGAGGTTGGTGGCCCTGCCCGGCAGGGGGGTTGGAGATTCATGATCCTTGAGGTCCCTTCCAACCCAGGCCATTCTGTGATTCTGTGATTCTGTG >CR1-B2_3end#LINE/CR1 8% and lower (B', CR1-GG) 60k 5%_B1a @general @gallus GGCCTTCTATGATGGAGTGACGGCATTGGTGGACAAAGGGAAGGCGACCGATGTCATTTACCTGGACTTGAGCAAGGCCTTTGACATGGTCCCCCACCACATCCTTATCTCCAAATTGGAGGGATGTGGATTTGATGGGTGGACCACCCGGTGGATAAGGAATTGGTTGAAAGGCCGCAGACAGAGGGTGGTGATTAATGGTTCTATGTCCAGGTGGAGGCCGGTAACGAGCGGTGTCCCCCAGGGGTCTGTCTTGGGACCGGTGCTCTTTAACATCTTTATCAATGACATCGATGACGGAATTGAGTGCACCCTCAGCAAGTTTGCTGATGACACCAAGCTGAGTGGTGCGGTTGACACAGTGGAAGGAAGGGATGCCATTCAGAGGGACCTCAACAGACTTGAAAGGTGGGCCCGGGTGAATCTAATGAGGTTCAACACAGCAAAGTGCAAGGTTTTGCACTTGGGCCGGAGGAATCCCAGGCATATATACAGACTGGAAGGAGCAGTCCTTGAGAGTAGCCCTGCAGAGAAGGACCTGGGGGTCCTGGTGGATGAAAAACTTAACATGAGCCAGCAGTGTGCTCTTGCAGCTCGGAAAGCAAATGGTATCCTGGGCTCCATCAGAAGAGGGGTGGCCAGCAGGGACAGGGAGGTGATTGTCCCTCTCTACTCTGCCCTTGTGAGGCCCCATCTGGAGTACTGCGTCCAGGTCTGGAGCCCCCAGTACAAGAAAGACAGGGAGCTGTTGGAGAGGGTCCAGAGGAGGGCCACAAAGATGATCAGAGGGCTGGAGCACCTCCCCTACGAAGACAGGCTGAGGGAGCTGGGCTTGTTCAGCCTGGAGAAGAGAAGGCTGCGGGGTGACCTCATTGCAGCCTTTCAGTACCTAAAGGGAGCCTATAAACAGGAGGGGAGTCAACTCTTTGAAAGGGTAGATAACAGCAGGACAAGGGGAAATGGTTTTAAGTTGAAGGAGGGAAGATTTAGGTTGGATGTCAGGGGGAAGTTCTTTACTATGAGAGTGGTGAGGTGCTGGAACAGGCTGCCCAGAGAGGTTGTGGATGCCCCGTCCCTGGAGGTGTTCAAGGCCAGGTTGGATGGGGCCCTGGGCAGCCTGGTCTAGTATTAAATGTGGAGGTTGGTGGCCCTGCCTGTGGCAGGGGGGTTGGAGNTTCATGATCCTTGAGGTCCCTTCCAACCCGGGCCATTCTGTGATTCTGTGATTCTGTG >CR1-C#LINE/CR1 7% (was B3a) ORF1 439-1530, ORF2 1533-4448. 7% subst level Wicker had bp 333-1550, 2212-end (CR1_G). GG000161, GG000278, GG000792, GG000228 @general @gallus CCAGCCAGAACCGCAGCGACTGATCGCGAGGTACAGGGGGGTTTTGGTCAGTTCCTTCATCCAGGGAACCCTGAGATAACAGGGCAGCCTGGCAGCTCTCACGAGAGCGGCTGATGTGGAGTGGGCGTTGCCAGGGCAACGGCTCTGCATCCACGCCCCCTNCCTAGAAAAAGCCTCGGGGACGGAGAGGAGGAGTCGGGGTGTGTGAATCACGTGGGCCGTTCAGACGAGGAGAAACGGTAAGCCACCTATTCGCGCGACTACACAGGGAGGAGGGTTGTTATCTCGCTGTGAAGCGAGTGATTTTCAGGGCAAACCCCGAGCGGATCAGCGAGCAGGCAGGGCAGGGCACCTTGCCGTATAGGAGGGGGCTTAGCACCTAGCACTTAACAGGTCACTTAACAGGTCGTTGCTCTCTGGACACACCGAGGTGCAACCATGGTCACCACACGGCGGCGAGCTGCTGCTAAAAGGAATGTGGAGACTCAGACTGAAAGCATGAATGCCCATGCCGCAGTTCAGGTCTCAGGCTGCGGAGAATGCCTGGCCCTGTCACTGCTACAGGAGGGCAGCCGGGATACCACCTGTGTGCGGTGTGAGCAGGTGGATGATCTGCTCAGCCTGGTGGTAGAGCTAAAGGAGGAAGTAGAAAGGCTGAGGAGCATCCGGGATTGTGGGAAGGGGATTGATTGGTGGAGTTGCACTCTGCCATCCCTACAGGAAGGGTGCGGGGGAGATGCTCCTCAAGCAGTGGGGGATCATCTGCCGTCTCACAGTCAGGTGGGAAGGGGCGACCTCAAAGACAGCGAGGGATGGAAACAAGTCCCTGTTCGGGGCAACAAGCGGACTGCCCCTCAGCCTGTCCCACCTTCCCAGGTGCCCTTACATAACAGGTATGAGGCTCTGGAGCTGGAGGGACTGGGGGATGTGGATGTTGGTGAAAGTCCATCCGTGCAGGAGAGGTTGCCCAAGGCTAGTCAGTCTGCTCCCCGTTTTGCTACAACATCAGTCAGGAAAAAAAGAAGGGCTGTCATCATAGGGGACTCCCTTCTGAGGGGAACCGAGGGCCCGATATGCCGCTCGGACCCGTCCCACAGGGAGGTGTGTTGCCTGCCTGGAGCCCGGGTGAGAGATGTTGCTAGGAACATCACTCGCCTGGTTAAGCCCTCCGATTATTATCCATTACTAGTTTTCCACATTGGAAATGAAGAGGTAGGCAAAAGAAGTTCTCGGGCGATCAAAAGGGACTTCAGGGCTCTGGGAAGACTTCTGAAGGGATCGGGAGCGCAAGTTGTGTTCTCCTCTGTCCTCTCAGTTGGTGACTGGGATCCGCACAAAAGGAGGAGGGTGGACACGCTGAATGAATGGCTTTGCGAATGGTGTCGCACTCAGGGCTTTGGGTACTATGGCTTGGGACGCAGCCTTGAGAAAGGGGGAATGCTGACGGCGGACGGGAGCCGACTGACTAGAAGGGCCACAAATATTCTTGGGAACAAGCTGGCTGGGCTGGTTAGCAGGGCTTTAAACTAGATATGATGGGGGAAGGGGGTGTACTGGGTGACAGAGAAGTGCGTGGGAACGCTGTCACCTTGGGAGGCGGTAAGGGAAAACCCCAGACTTGTCCTGGAGGTATTAGGGAGGGCTCCTCCGAGAAGGCAACGAGGCCAATAGCTAAGCTGAAGTGCCTCTATACCAGTGCGCGCAGCATGGGAAATAAACAGGAGGAGCTAGAAACCGTGGTGCAATTGGGAAAGTATGACCTAATTGCTATCACGGAAACATGGTGGGATGAATCCCACGATTGGAATACCCTGATTGAGGACTACAGGCTTTTCAGAAGGGATAGACAGGGTAGGAGGGGTGGCGGAGTTGCCCTCTATGTTAGGAAGTGGATAGATTGCGAAGAGCTGTGTCTGAGGAACAGCCACGATCAGGTCGAGAGCTTGTGGGTAAAAATCAAGGATCGGTCCAGTAAAGGGCATCTAGTGGTTGGGGTCTGCTACAGGCCACCTGATCAGGGGGAGGCTGTTGACGAGGCCTTCTTGCTTCAGCTGCAGGAGGTGTCGCGCTCGCGGGCTCTTGTCCTGATGGGGGATTTCAACCACCCGGATATCTGCTGGGATAGTGGCATGGCGGGTGGCAGACAATCCAGGAGATTCCTGGAGTCTGTCGAGGACAACTTCCTGGTCCAGGTAATAGATGGACCAACCCGAGGTGAAGCCTTACTGGACCTGGTGCTCACTAATGCAGAGGAGAGCATTAGAGAGGTTAAGATTGGAGGCAGCCTGGGCTGTAGTGACCATGCCTTGGTGGAGTTTGTGATCTTGAAGAATGCGGGCCTGGCAAAAAGCAGAGCTAGGACCCTGTGCTTTAGGAGAGCAAACTTCCGGCTGCTCAAGGAACTGCTGAGTGGGATCCCCTGGGAAACTGTCCTTAAGGGCATGGGTACAGAACAGAGCTGGCAGCTCTTTAAGGACACCCTTCTGAGAGCGCAACGGCTCTCCATCCCCCAGCAGAAGAAGTCGAGCAGGGGAGGCAGGCGACCGTCGTGGCTGTGCAAGGACCTGCAGCTTAAACTGAGAGAAAAGAGGGAAATGTACAGAAAGTGGAAGCAGGGTTGTGTATCCTGGGAGGAATACAGGGCTGTTGTCCGTGTGTGTAGAGATAGGATTAGGAAAGCCAAGGCGCAGATGGAGCTGAACTTGGCGAGGGATGTGAAAGATAACAAGAAGGGGTTCTACAGGTACATAGGCAGGAGGAGACAGGCCAAGGAGAGTGTTCCCCCTCTGATGAAAGGTAATGGGGAGCTGGCTTCCTCAGACATAGAAAAAGCTGAGGTACTCAGTGAGTGCTTTGCCTCAGTCTTCACGGGTGGTCAGGCTTCCCGTGTCTGCCAGGACCATGAGCCTCTAGGTGAGGGTGTGGGGAGTGGTTTCTGTCCCACTGTAACGGTGGAACAAGTCCGAGTCCTCCTCATGAAATTGAACGTGTATAAGTCCATGGGGCCGGATGATATCCATCCTAGGGTTCTGAAAGAGATGGCTGATGTGGTTGCCGAGCCGCTCTCCATCATATTTGAAAAATCATGGCTGTCTGGTGAAGTCCCCGGTGACTGGAAAAAGGGAAACATTACTCCCATTTTTAAGAAAGGGAGAAAGGAAGACCCGGGGAACTACAGGCCGGTGAGCCTCACCTCTGTGCCTGGGAAGATCATGGAGCAGATCCTCCTAGAAGCTATGTTAAGGCACATACGAGATAAAGAGGTGATTCGAGACAGCCAGCATGGCTTCACCAAGGGCAGATCGTGCCTGACCAATCTGGTGGCCTTCTATGATGGAGTGACGGCTTCGGTGGACGGGGGAAGGGCGGTGGATGTCATCTACCTGGACTTCTGCAAGGCCTTTGACATGGTCCCTCACCACATCCTTCTCTCTAAATTGGAGAGGTGTGGATTTGAAGGATGGACTGTTCGATGGATTAGGAATTGGCTGGCTGGACGCAGCCAAAGGGTTGTGATCAATGGTTCTGTGTCAGGGTGGAGGCCGGTCACAAGCGGTGTCCCTCAGGGGTCGGTCTTGGGACCGGTGCTCTTCAACATCTTCATCAATGACATAGACGATGGCATCGAGTGCACCCTCAGCAAGTTTGCGGATGACACCAAGCTGAGCGGTGCAGTCGATACGTTGGAAGGAAGGGAAGCCATCCAGAGGGACCTGGACAGGCTGGAGAAGTGGGCCCATGAAAACCTAATGAGGTTCAATAAGGCCAAGTGCAGGGTGCTGCACTTGGGTCGGGGCAATCCCAGGTATTTATACAAACTGGGGGAAGATCTCCTTGAGAGCAGCCCTGCGGAGAAGGACTTGGGGGTCCTGGTGGACGAGAAGCTGGACATGAGCCAGCAGTGTGCGCTTGCAGCCCGGAAGGCCAACTGTGTTCTGGGCTGCATTAAAAAAGGGGTGGCCAGCAGGGAGAGGGAGGTGATTGTCCCCCTCTACTCAGCTCTTGTGAGGCCCCATCTGGAGTACTGCGTCCAGGCCTGGGGCCCCCAGTACAGGAAGGACGTGGAGCTCTTGGAGCGGGTCCAGAGGAGGGCCACTAAGATGATCAGAGGGCTGGAGCACCTCTCCTATGAGGAAAGGTTGAGGGAACTGGGCTTGTTTAGCTTGGAGAAGAGAAGGCTCCGGGGAGACCTCATTGTGGCCTTCCAGTACTTGAAGGGAGCGTATAAACAGGAGGGGGAACGGCTGTTTACGAGGGTGGATAGTGATAGGACAAGGGGGAATGGTTTTAAACTGAGACAGGGGAGGTTTAGGTTAGATATTAGGAGGAAGTTTTTCACACAGAGGGTGGTGACGCACTGGAACAGGTTGCCCAAGGAGGTTGTGGATGCCCCATCCCTGGAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGGTGGTTGGCGACCCTGCACATAGCAGGGGGGTTGAAACTNGATGATCATTGTGGTCCTTTTCAACCCAGGCCATTCTATGATTCTATGATTCTATG >CR1-C2_3end#LINE/CR1 10% (was B3b) GG000228 39k 2%_B3a @general @gallus GGCCTTCTATGATGGAGTGACGGCATCGGTGGACGGGGGAAGGGCGACGGATGTCATCTACCTGGACTTCTGCAAAGCCTTTGACATGGTCCCTCACCACATCCTTCTCTCTAAATTGGAGAGGTATGGATTTGAAGGATGGACTGTTCGGTGGATTAAGAATTGGTTGGCTGGTCGCAGCCAAAGGGTTGTGATCAATGGTTCTGTGTCAGGGTGGAGGCCGGTCACAAGCGGTGTCCCCCAGGGGTCGGTCTTGGGACCGGTGCTCTTCAACATCTTCATCAATGACATAGACGATGGCATCGAGTGCACCCTCAGCAAGTTTGCAGATGACACCAAGCTGAGCGGTGCAGTCGATACACTGGAGGGAAGGGAAGCCATCCAGAGGGACCTGGACAGGCTGGAGAAGTGGGCCCATGNGAACCTAATGAGGTTCAACAAGGCCAAGTGCAGGGTGCTGCACTTGGGCCGGGGCAATCCCAGGTATTTATACAGACTGGGGGAAGANCTCCTTGAGAGCAGCCCTGCGGAGAAGGACTTGGGGGTCCTGGTGGACGAGAAGCTGGACATGAGCCAGCAGTGTGCGCTTGCAGCCCGGAAGGCCAACTGTGTTCTGGGCTGCATTAAAAAAGGGGTGGCCAGCAGGGAGAGGGAGGTGATTGTCCCCCTCTACTCAGCTCTTGTGAGGCCCCATCTGGAGTACTGCGTCCAGGCCTGGGGCCCCCAGTACAAGAAGGACGTGGAGCTCTTGGAACGGGTCCAGAGGAGGGCCACTAAGATGATCAGAGGGCTGGAGCACCTCTCCTATGAGGAAAGGTTGAGGGAACTGGGCTTGTTTAGCTTGGAGAAGAGAAGGCTCCGGGGAGACCTCATTGTGGCCTTCCAGTACTTGAAGGGAGCGTATAAACAGGAGGGGGAACGGCTGTTTACGAGGGTGGATAGTGATAGGACAAGGGGGAATGGTTTTAAACTGAGACAGGGGAGGTTTAGGTTAGATATTAGGAGGAAGTTTTTCACTCAGAGGGTGGTGACGCACTGGAACAGGTTGCCCAAGGAGGTTGTGGATGCCCCATCCCTGGAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTAGTGGTTGGCGACCCTGCNCATAGCAGGGGGGTTGAAACTAGATGATCNTTGAGGTCCTTTTCAACCCAGGCCATTCTATGATTCTATGATTCTATG >CR1-C3#LINE/CR1 15% (was B3e, X2) GG000915 (part), GG000575, GG000077 @general @gallus CTTTTCTGCGAGGCACTCGGCTCCGGGGCGGACGCATTCCGTGCCGAAGCAAGGAATCGCCTCAGCAGGCGAGGGGAGCNCCTGTCAGGGAGCAGCTGCCGGGCGCCATTAGCCCTCCTCGTGGCGGCAGCGCCCTGACGCGGCGGGGGCGGGGCCAGGAGCGGCGGGGCCACNCCCTGNGCATACAAAGGCGGCCANCAGGGAGCGCAGTGACCCAGGAGCANGGCGAACAGGACGGGCAAACAGGGCGTGGCGCGTCAGAAGGGCGTGGTGCGGCAGTTTGCGCGGGCAGTTCGTGCAGGGCAGGGGGGGCGAGCAGGGCGCGCTGCTCTTCTCATCCAGGGCCGCNAGGGGAAAGCTCTCTATTAGTACCAACATGGTGACCACCCGGCGTGGCAGACAGGCNGAGGCAGAAACACAGACGGGGGGCCCACAACCTCTCTGGGCTGACGCGTGCACCCAGACGGACCTCCTGAGGAGCGAGAGGGCTGCCCAGACCTTTGGCTGTGGGGAGCTCTGGAATCTGGAGGTCACCCGAGGGACTGAGGTAGGTGAGGGGTGTCATGGGTGCAGGTGTGCCCAACTTGATGATCTTCTTGAGCAGCTGACCAGGCTGNGAGAGGAAGTCGCCAGGCTGAGATGTATTCAGCAGTCTGAGAGAGAGATTGATGCCTGGTATCGCGCGGTGGCACGGGCAGACAGACAGCCCTGTCTTGGGGCCCAGCCAGGGGAGNAAGATAAGCAGACTTCCCACCTGACAGAGGGTAAACACGTGCAGGGTGAGGGAGACTGGACCTTCGTCTCTGCTCGGGGCAAAAGGAGAAGACTCCCCCTTGCTCCTGAAGTCCCACTAGCTAATAGATTTCAAGCTCTGGTGTGGGAGAGAGAAGAAGGTATGGATAGCGGCTTGGNACCGGAAAGGGGTGATCACATTAAAAAGGTCCAGCCGAGGACCTGAGTCACGACCAGTGCCACTAAAAAAAAGGCGAAGGGTCTTAGTAATTGGAGACTCTTTGCTGAGAGGCACTGAGGCGCCCATCTGCCGCCCGGATAACCTCTCTAGAGAGGTTTGCTGCCTGCTGGGGGCCCGCATTCGGGACATCAAGAAGAGGATATCGGGTACGATAAAGCCGGANGACTACTATCCCCTCCTGGTCTTTCAAGCTGGGTCGCGTGAGGCTGCGACCAGGAAATTAAAAAATATCAAAGAAGACTTTACGTCCCTTGGGAAGATGTTGAAGGGATCGGGAGCGCAGGTAGTGTTCTCCTCAGTCCTCCCAGCTGGAGACTGGGATCCGGGCAGAAGGAGGAGAACGGATCAGTTGAATGACTGGCTGCGTGGGTGGTGTCACGCCGAAGGCTATGGGTTCTATGATCTAGGACGCACCTTTGACAAACCAGGAATGTTGACGTGGGATGGGACGCAACTGACCAGGAGGGGCAAGAATATACTAGGCAGCAAGCTGGCTGGGCTCATCACCAGGGCTTTAAACTAGAGCTGCTGGGGGAAGGGGGTGTACTGCTGAGTGACAGAGAAGAGCCAGGGAACACTGTCACTTTAGGAAGCAGCAGGGGAAAACCTCAGATTTGTCCCGGAGGTTTGTGGGAGGGCTCCTCTAGGAAGGTAATGCGTCCGAAAGCCCAGCTGAAGTGCCTCTATACCAATGCACGCAGCGTGGGAAATAAGCAGGAGGAGTTGGAAACCGTGGTGCACTTGGAAAACTATGATCTTATTGCTATCACGGAAACATGGTGGGATGATTCGCATAACTGGAATACCACCATTGAGGGCTATAAGCTTTTTAGAAGGGATAGGCAAGGTAGGAGGGGTGGGGGAGTTGCCCTCTATGTTAAAAAGTGGATAGACTGCGAGGAGCTCCCTCTGAGAAACAGTCAGGAACAGGTTGAGAGCCTGTGGGTTAAGATTAGGGATGGGACCAATAAAGGACAGCTGGTGGTCGGGGTCTACTACAGGCCACCTGATCAAGGGGAGCCTGTTGACGAGGCCTTCTTGCTTCAGCTGCAAGAAGTGTCATGCTCGCAGGCTCTCATCCTGATGGGGGATTTCAACCACCCGGATATCTGCTGGGAAAACAACACGGTGAGCTGCAAGCGATCCAGGAGACTCCTGGAGTCCATCGACGATAACTTTCTGGTTCAGGTATTGGACAGACCGACCAGAGGTGAAGCGTTGCTGGACCTGGTGCTCACCAATGCGGAGGAGATCGTTAAAGACATTAAGATTGGAGGCAGCCTGGGCTGCAGCGACCATGCCCTGGTTGAGTTCGTGATCTCGAGGAACGTGGGCCTGGCAAAGAGTGGAGTCAGGACCCTGAACTTCAGGAGAGCGAACTTCAGGCTGTTTAAGGAATTGTTGGACGAGATCTCCTGGGAAGCTGTCCTTAGAGACAAAGGAGTGGAGCAAAGCTGGCTACTCTTTAAGGATGCCTTTCTGAGAGCGCAAGAGCTCTCCATCCCTCAGAATAAGAAAGCAGGCAGGGGAGGCAGGAAACCAGCATGGCTTGGCAAGGACCTGCTGGTCAAACTGAGGGAAAAGAAGGGCANGTACAGGCAGTGGAAGCAAGGACGTGTCACCTGGGAAGAATACAGGGATGCTGTCCGGACNTGCAGAGATGGGATTAGGAAAGCCAAGGCACAGATGGAACTGAACTTGGCGAGGGATGTTAAAAACAACAAGAAGGGATTCTACAGGTACATNGGTCAGAAGAGACAGGCCAAAGAGAGCGTACCTCCTCTGATAAATGAGAAAGGAGAACTGGCTACAACAGATATGGAGAAGGCTGAGGTACTCAATGAGTTCTTTGCCTCAGTCTTCACTGGCAGCCAGGATTCTCATATTTCTCACATCCCTGAACCTCACATCCCTGAACCTCTNGGTGGGAACTGGGGGAGCAAACTCCCCCCCACTGTAAGGGCAGAGCAAGTCCGAGACCGCCTCATGAGACTGAATGTGTACAAGTCCATGGGGCCGGATGACATGCATCCCAGGGTCCTAAGGGAGCTGGCTGATGTGGTTGCTGAGCCGCTCTCCATCATATTTGAAAAGTCGTGGCTGTCAGGCGAAGTCCCCGGGGACTGGAAAAAGGGAAACATCACTCCCATTTACAAGAAAGGGAGGAAGGAGGACCCGGGGAACTACAGGCCGGTGAGCCTCACCTCTGTGCCTGGGAAGATCATGGAACAGATCCTCCTGGAAGACATGTTAAGGCACATGAGGGATGAGCAGGTGATCCGAGACAGCCAGCATGGCTTCACCAAGGGAAGGTCGTGCCTGACCAATCTGGTGGCCTTCTATGATGGAGTGACGGCATCGGTGGACAAAGGGAAGGCAACTGATGTCATCTACCTGGACTTCTGCAAGGCCTTTGACATGGTCCCCCACCACATCCTTATCTCTAAATTGGAGAGATACGGATTTGAAGGGTGGACTATTCGGTGGATAAGGAATTGGTTGGAAGGTCGCAGCCAGAGGGTTGTGGTCAATGGCTCTATGTCCAGGTGGAGGCCGGTGACGAGCGGTGTCCCCCAGGGGTCTGTCTTGGGACCGGTACTCTTTAACATCTTTATCAGTGACATAGATGATGGGATCGAGTGCACCCTCAGCAAGTTTGCTGATGACACCAAGCTGAGTGGTGCGGTTGATACAGCAGAAGGAAGGGATGCCATCCAGAGGGACCTTGATAAACTCGAAAGGTGGGCCCNTGTGAACCTAATGAGGTTCAACAAAGCAAAGTGCAAGGTTTTGCACTTGGGTCGGGGTAATCCCAGATATGTATACAGACTGGGAGAAGAACTCCTTGAGAGTAGCCCTGCTGAGAAGGACTTAGGGGTCCTGGTAGATGAAAAACTTAACATGAGCCAGCAGTGTGCGCTTGCAGCCCAGAAGGCCAATGGTATCCTGGGCTGCATCAGAAGAGGGGTGGCCAGCAGGGCGAGGGAGGTGATTGTCCCCCTCTACTCTGCCCTCGTGAGGCCCCATCTGGAGTACTGCGTCCAGGTCTGGGGCCCCCAGCACAGGAAAGATGTGGAGCTTTTGGAGNGGGTCCAGAGGAGGGCCACGAAGATGATCNGAGGGCTGGAGCACCTCTCCTATGAAGACAGGCTGAAGGAGCTGGGCTTGTTCAGCCTGGAGAAGAGAAGGCTGCGGGGAGACCTCATTGCGGCCTTCCAGTATTTAAAGGGAGNTTATAAACAGGAGGGAAATCAACTTTTTACACGGGTAGATAGTGATAGGACAAGGGGGAATGGTTTTAAACTAAAGGAGGGAAGATTTAGATTAGATGTCAGGGGGAAGTTTTTCACTGAGAGGGTGGTGAGGTGCTGGAACAGGTTGCCCAGAGAGGCTGTGGATGCCCCGTCCCTGGAGGTGTTCAAGGCCAGGTTGGATGGGGCCCTGGGCAACCTGATCTAGTACTTGATCTAGCGGTTGGCAACCCTGCCTGTGGCAGGGGGGTTGGAACTTGATGATCCTTGAGGTCCCTTCCAACCCAAGCCATTCTATGATTCTATGATTCTATG >CR1-C4#LINE/CR1 18% GG000915 (part), GG000575, GG000077 (once was X1) @general @gallus CTTTCCTGTGAGGTGCTCTGCTCCAGGGCAGGTGNACGCCGTGCCGAANCANGNAACNGNCTTGGTGGGCGGAGGGGTAGCCCCTGTCAGGNAGNAGCTGCCAGGCGCCACTGTCCTCCTGTGGCGGCAGTGCTCTGACGCGGCGTGGGCGGAGCCGGGAGCGGNGGCGTCACACCCCGCACATACAAAGGCTGTTCCCAGGGAGCGCAGTGACCCAGGAGCATGGTANCAGGACATGCAAACAGGGCATGGCGCGTCAGAAGGGCATGGTGCGGCAGTTTGCGCGGGCAGTTCGTGCAGGGCAGGGAGGGCGAGCAGGGCGGGCTGCTCTTCTCATCTGGGGNCGCGAGGGNGCGGCACTCTATTGAAACNAACATGGTGACCACCCGCCGCAACGGCCGGGCTGAGGCAGAAACCCAGACNGAGGGGCCACAACCTTTCTGGGCTGACACGTGCACCCAGACGGACCTCCCGAGGAGCGANAGAGCTGCCCAGACCTCCGGTTGTGGGGAACTCCAGAATCTGGAAGTCCCCCAAGGGCCTGAGGNAAGNGGGGGGTGTCACGGGTGCAAGTGCGCCCAGCTTGATGAACTTTTTGAGCAGGTGGCCAGGCTGCGAGAGGAAATCGCCAGGCTGAGANGTATCCAGCAATCAGAGAGAGAGATTGATGCGTGGTATCGTGCAGTGACACGGGCAGACCGACAGCCCTGTCTTAAGTCCCNGCAAGGGGAAGAAGATAAGCAGGCTTCCAACCTGACAGAGGGCAAANACATGCAGGATGAGGGAGACTGGACCCTCGTCTCTGCTCGGGGCAGAAGGAGGAGCCTCCCCCTTGCCCCTGAAGTCCCCCTAGCCAACAGATATGAAGCTCTGGGGATGGAAAGAGAAGAGGGTGTGGATAGTGGTTCGGAACCGGAAAGGGGCAACCACGTTAAGANGGTCCAACCGAGGACCCGAGTCAGAACCAGTGCCACTAAAAAAAAGGCGAAGGGTCTTAGTAATTGGGGACTCCGCGCTGAGGGGCACTGAGGCACCCATTTGCCGCCCGGATAATCTCTCTAGAGAGGTTTGCTGCCTGCCGGGGGCCCGCATTCGGGACATCAGGAAGAGGCTACCAGGTATGATAAAGCCGGAGGACTACTATCCACTCCTGGTCTTTCAAGCTGGGTCACANGAGGCTGCAACTAGGAAATTANAAAATATTAAAAAAGACTTTACGTCCCTTGGGAAGATGTTGAAGGGATCGGGAGCACAGGTAGTGTTCTCCTCGGTCCTCCCGGTTGGAGACTGGGANCCGGGCAGAAGGAGGAGAACGGACCAGTTGAATGAATGGCTGCGTGGATGGTGTCACGCTCAGGGCTTTGGGTNCTATGATCTNGGACGCACCTTCGATAGACCGGGCATGTTGACGTCGGATGGGACGCAACTGACCAGGAGGGGCAAGAATATACTGGGCAGCAAGCTGGCTGGGCTCATCACCAGAGCTTTAAACTAGATTTGATGGGGGAAGGGGATGTACTGCTGAGTGACAGAGAAGAGCCAGGGAACACTGTCACTTTAGGAAGCAGCAGGGGAAAACCTCAGATTTGTCCCAGAGGANTTTGGGAGGGCTCCTCCAAGAAGGTAACGCGGCCGATAGCCCAGCTGAAGTGCCTCTACACCAATGCACGCAGCATGGGAAATAAGCAGGAGGAGNTGGAAACCGTGGTGCAATTGGAAAACTATGACCTAATTGCTATCACGGAAACATGGTGGGATGANTCACACAACTGGAATACTACGATTGAGGGCTACAAGCTTTTTAGAAGGGATAGGCAAGGTAGGAGGGGCGGGGGAGTTGCCCTCTATGTTAAGAAGTGGATAGACTGTGAAGAGCTGCCTCTGAGAAACAGCCACGANCAGGTTGAGAGCCTGTGGGTTAAAATTAGGGACCGGACCAATAAAGGACATCTGGTGGTCGGGGTCTACTACAGGCCGCCTGATCAAGGGGAGCCTGTTGACGAGGCCTTCTTGCTTCAGCTGCAAGAGGCGTCGCACTCGCAGGCTCTCATCCTGATGGGGGATTTCAACCACCCGGATATCTGCTGGGAAAACAACACGGCGAGCTGCAAGCAATCCAGGAGACTCCTGGAGTCCGTTGANGATAACTTTCTGGTCCAGGTATTGGACAGACCGACCAGAGGTGAAGCGTTGCTGGACCTGGTGCTCACCAGTGCGGAGGAGATCATTAAAGAGGTTAAGATCGGAGGCAGCCTGGGCTGTAGTGACCATGCCCTGGTTGAGTTCGTGATCTCGAGGAATGTGGGCCTGGCAAAGAGTAGAGTCAGGACCCTGAACTTCAGGAGAGCAAACTTCAGGCTGTTTAAGGAATTGTTGGACGAGATCCCCTGGGAAACTGTCCTTAGGGACANAGGAACGGAACAGAGCTGGCAGCNCTTTAAGGACGCCTTTCTGAGAGCGCAAGAGCTCTCCATCCCCCAGCATAAGAAATCAGGCAGAGGAGGCAGGAAACCGGCGTGGCTGAGCAAGGACCTGCTGGTCAAACTGAGGGANAAGAAGGAAANGTATAGGCAGTGGAAGCAGGGATGGGTGGCCTGGGAAGAATACAGGGATGCTGTCCGGACGTGCAGAGATGGGATCAGGAAAGCCAAGGCGCAGATGGAANTGAACTTGGTGAGGGATGTGAAAAACAACAAGAAGGGNTTCTNCAGGTACATTGGTCAGAAGAGACAGGCAAAGGAGAGTGTACCCCCTCTGATAAATGAGAAGGGAGAACTGGCTTCANCAGACATGGAGAAGGCTGAGGTACTCAATGAGTTCTTTGCCTCAGTCTTCACTGGCAGTCAGGCTTCCCATGCCTCTCGTGTCCCTGAACCTCTAGGCGGGGGTCGGGGGAGCAAAATCCCTCCCACTGTAAGAGCAGAGCAAGTCCGAGACCACCTCATGAGGCTGAATGTGTACAAGTCTATGGGGCCGGATGACATGCATCCCAGGGTCCTGAAGGAGCTGGCTGATGTGGTTGCCGAGCCGCTCTCCATCATATTTGAAAAGTCGTGGCTGTCAGGTGAAGTCCCCAGCGACTGGAAAAAGGGAAACATCACTCCCATTTTTAAGAAAGGGAGAAAGGAAGACCCGGGGAACTACAGGCTGGTGAGCCTCACCTCTGTGCCTGGGAAGATCATGGAGCAGATCCTCCTGGAAGANATGTTAAGGCACATGCAAGATGAGGAGGTGATCCGAGACAGCCAGCATGGCTTCACCAAGGGCAGATCGTGCCTGACCAATCTGGTGGCCTTCTATGATGGAGTGACGGCATCGGTGGACAAAGGAAGGGCAACTGATGTCATCTACCTGGACTTGTGCAAGGCCTTTGACATGGTCCCACACCACATCCTTATCTCTAAATTGGAGAGATATGGATTTGAAGGCTGGACTATTCGGTGGATAAAGAATTGGTTGGATGGTCGCAGCCAGAGGGTTGTGGTCAATGGCTCTATGTCCAGGTGGAGGCCGGTCACGAGTGGTGTCCCCCAGGGGTCCGTCTTGGGACCGGTGCTCTTCAACATCTTTATCAATGACATAGACAGTGGGATCGAGTGCACCCTCAGCAAGTTTGCTGATGACACCAAGCTGAGTGGTGCAGTTGACACAACAGAAGGAAGGGATGCCATCCAGAGGGACCTGGACAGGCTTGAAAAGTGGGCCCATGAGAACCTAATGAGGTTCAACAAGGCCAAGTGCAAGGTGTTGCACTTGGGTCGGGGCAATCCCAGATATGNGTACAGACTGGGAGAAGAACTCATTGAGAGCAGCCCTGCGGAGAAGGACTTGGGGGTCCTGGTGGACGAAAAGCTGGACATGAGCCAGCAGTGTGCNCTTGCAGCCCGGAAGGCCAACAGTATCCTGGGCTGCATCAAAAGAGGGGTGGCCAGCAGGGAGAGGGAGGTGATTGTCCCCCTCTACTCTGCCCTTGTGAGGCCCCATCTGGAGTACTGCGTCCAGGCCTGGGGCCCCCAGCACAAGAAGGATGTGGAGCTGTTGGAGCGGGTCCAGAGGAGGGCCACGAAGATGATCAGAGGGCTGGAGCACCTCTCCTATGAAGAAAGGTTGAGGGAGCTGGGCTTGTTCAGCTTGGAGAAGAGAAGGCTCCGGGGAGACCTCATTGCGGCCTTCCAGTACTTGAAGGGAGCTTATAAGCAGGAGGGGGACCGACTTTTTACACGGTCTGATAGTGATAGGACAAGGGGGAATGGCTTTAAACTAAAAGAGGGGAGATTTAGGTTAGATGTTAGGAAGAAATTCTTTACTCAGAGGGTGGTGAGGCGCTGGCACAGGCTGCCCAGAGAAGCTGTGGATGCCCCATCCCTGGAGGCGTTCAAGGCCAGGTTGGATGGGGCCCTGGGCAGCCTGATCTGGTGGNTGGCAGCCCTGCCCATGGCAGGGGGGTTGGAACTAGATGATCTTTAAGGTCCCTTCCAACCTAAGCCATTCTATGATTCTATGATTCTATG >CR1-D#LINE/CR1 12% (was B5a) GG000176, GG000123?, GG000834 ORF1 <655-1542, ORF2 >1422-4583 23%_B3c (b5b a bit included) @general @gallus GGCCATTTTAGCAAAGACTTCGTGCGGATCAGCTGCATAGCAGAAGTTCGCACCGAGGGAGCCTTCACAGAAAGGTAAATCCGCGGCAAAGCACCGCGGAAAAAGCCGTTGNGAAGGGNGGGAGCAGCCCCTGACGTGCGGCAGCGCTGACGCGGTGTGGGCGGAGCCGGGGGGTGACAGCGGCCGAACCCCCCCGCGTGTATAAAACCTGCCGCTNGGGAGCGGNGCGAACGGGACGGGCAAACAGGGCGCGGCGCGTCAGAAGGGCGTGGCGCGGCAGTTCGCGCAGGCNGGGCGAGCAGGGAGGGCGAGCACCCTGAGGGCTAGAGAGATAAGTTCATTAGGTGATTATCACCCGCNAAGTACAGGGTCATCACACTCTAAGTGCAGGATTATCACCCTCCGAGGACAGAGACTTAGTCATGGTATCCACCCGAAGGAGAGCNAGGGTGTCTGCCCCTGTCAGGAAGGATGCTGCAACCCTGACTGAGTNCGGAGGCAACCATGCAGCCGTCCAGACCTCCGGCTGTGTAGAGTGCATGAGCCTTTCACTGGCATCGTGGGGCAGCAGTCAGAACAGCTGTGTGAGGTGTGAGCAGGTAGACGATCTGCTCNGCCTTGTGGCGAGGCTACAGGATGAAATATATAGATTAAAAAGTGTCATGGGGGACAAAAAGAAGGAGCAGGGAAACCACAGTTCACCCATGCACAGACAGGTTATTTCAAAGGAAAAAAACACAAAACCCAAGGCAGCCTGTATCACATCAGGTTGAGGAAAAAAATTGCAAGGCTGGAGGCAAGAACACAAAGGAAAGGAGCGGATGGAGGCAAGTCTGCGCTCGAAGCTGCAAACGAAAACCCTCCTTGCCTGCTCCACCCCCCCAGGTGCCTCTGTACAACAGGTATGAGGCCCTGGATGTGGAAGGCCCGTCTGTGGGTGATAACAGCCCACTCAGNCTAGACANACTAACAAAACCAAACCAGGAAAAGCCTTCCCCCAACATCAAGACTACATCACTGAAGAAGAAGAGACGGGTATTAGTTGTAGGTGATTCCTCCCTACAGGGAACTGAACGTCCAATATGCCGAGCAGACCCTCTTCTTAGAGAAGTCTGCTGTCTTCCTGGGGCTCGGGTGAGGGATGTCACCAGGAAACTACCTAGCCTGGTACGGCCGACAGACCACAACCCCTTACTGCTTTTCCATATAGGGAGAGATGAAGCAGCTACATGTGGGTCAAGGGCTATCAAAAGGGACTTCAGGGCCTTGGGACGACGGCTGAAGGAATTGAATGCACAGATCATCTTTTCTTCTCTGCCTCCTGTATTGGGTAAGGACACGGAAACAAATCAAAGGATCTTATCTTTAAATACCTGGCTTTGTGGCTGGTGCCGTCGCCAGAACTTTGGTTTTTTTTTTGACAACCAAATGGCCTACATGGCACCGGGTTTGTGGGCACCAGATGGGGTTCGCCTTTCTCAAAGGGGGAGAAGGGTCCTTGGGGAAAAGCTAGCGGGGCTCATTGGGAGGGCTTTAAACTAGGTCTGAAGGGGGACGGGGGGGATAGTGAGCCTTCCCATGATAAGGTGTGGGATGGCATAGCTATATTAGAGGGACAGGGTGCTAGCAGGGGCCTTGAAGGACCCGCTGCCTTGAGAGGTGCTGGCAACACTGCAGCACATACGAAATCCTATGATGATGAGGCAGTGACTGCTGGGGCAACAGGAGAAGGCAACGGGGAAAATCAAGGGAAATACTTAAAAGGAATTAAGGAGTTATCCTTTAAGGAGGTGACAAGACCAGCTGCCCAGCTGAAGTGCCTCTACACCAATGCACGCAGCTTGGGAAACAAACAGGAGGAGCTGGAAGCTACTGTGCTACTAGAAAACCACGATATAGTTGCCGTCACCGAAACCTGGTGGGATGATTCCCATGACTGGAGTGTGGCTATCGACGGCTACAAGCTGTTCAGAAGGGACAGGCGAGGAAGGAGGGGAGGGGGTGTTGCTATCTACATCAGGAAAGGAATAGAATGTGAAGAGCTGTCCCTAAAGAACAGTCATGAGCAAGTCGAAAGCCTATGGGTGACAGTTAGAGACCGAGGCAGCAAAGGGAGCCTTGTGATCGGTGTCTACTACAGGCCACCCGATCAAGCAGAGCCTGTCGATGAGGCCTTCTACCTCCAGCTACAGGAGGCGTCGCGATCGCAAGCGCTCGTCCTGCTGGGGGACTTCAACCACCCAGACATCTGCTGGAAAAGTAGCACGGCGAGCTGTAGGCAATCCAGGAGGCTCCTGGAATGCATTGAGGATAACTTCCTGAGTCAAGTAATNGACGGCCCCACCAGGGGGGATGCAATACTGGACCTGTTGCTCACCAATGCAAATGAACTGATTGGTGACATCAGGATTGGAGGCTGCCTGGGCTGTAGTGACCATGCTATGGTTGAGTTCACGCTCCGGAGGGATATGAGACAGGCAAAGAGTAAAATTAGGANGCTAAATTTTAGGAAAGCTAACTTCCAGCTCTTCAGGGAGTTAGTCAACAAAACACCCTGGGAAACTGTCCTCATGGGCAAGGGTGCGGAGCAGAGCTGGCAGATCTTTAAGGAAGCTTTCCTCAGGGCGCAAGAGCTCTCCATCCCCAGGTGTAGCAAGTCAGGAAAGGAAGGCAAGAGACCGGCGTGGCTGAACCGGGACCTGCTGGTCAAACTGAAGAGCAAGAAGAAAATGCACAGGCAGTGGAAACAGGGACAGGTACCGTGGGAAGAGTATAAGGAAGCTGCTAGGCTGTGTAGGGATGGGGTCAGGAAAGCCAAGGCCCAGCTTGAACTGAACTTGGCAAGGGATGCCAAGAAGAACAAGAAAGGCTTCTACAGGTACCTCAACCAGAAAAGGAAAGTCCAGGAGGGCGTACCCCCCCTAGTGAGTGACACAGGCAGGCTGGTAACAACAGACAAGGAGAAGGCTGAGGTACTTAACAACTTTTTTGCCTCGGTCTTCTCTGATAACTGCTCGCCACACAGCCCTCAAACGTTTGGTTTGGTAGGAGGGGATTGGGGAAGCAACGTCCCTCCCACTGTAAGCGAAGATCAGGTTCGTGACCACCTGAGGAACCTGAACATCCACAAGTCTATGGGTCCCGATGAGATGCATCCCAGAGTCCTGAGGGAATTGGCTGATGTAGTCGCCAAGCCACTCTCAATGATATTTGAAAAGTCGTGGCAATCAGGTGAAGTCCCTGGTGACTGGAAAAAAGGCAACATCACACCCATTTTTAAGAAGGGTAAAAAGGATGACCCCGGGAACTACCGACCTGTCAGTCTCACCTCTGTGCCGGGAAAGATCATGGAGCAGATCCTCCTGGAAGCTATGCTAAGGCACATGGAAGACAGGGAGGTGATACGGGAGAACCAGCATGGCTTCACCAAGGGCAAATCCTGCTTGACCAACCTAGTGGCCTTCTATGATGGTGTCACTGCATCAATGGACAAGGGAAGAGCCACTGATGTCATCTATCTGGACTTCAGTAAGGCCTTTGACACGGTACCCCACAACATCCTTCTCTCCAAATTGGAAAGATATGGATTTGATGGGTGGACTGTTCAATGGACGAAGAACTGGCTGCAGGATCGAGTCCAGAGAGTGGTGGTCAATGGCTCAATGTCTGGATGGAGATCAGTGACGAGTGGTGTCCCCCAGGGGTCAGTGCTGGGACCGATACTCTTTAATATCTTCATCAGTGACATTGACAGTGGGGTCGAGTGCACCCTCAGCAAGTTTGCTGATGACACCAAGCTGTGGGGTGCAGTCGACACACCAGAGGGACGGGATGCCATCCAGAGGGACCTAGACAGGCTTGAGCAGTGGGCCCAGGTGAACCTCATGAGGTTCAACAAATCCAAGTGCAAGGTCTTGCACCTGGGTCGAGGCAACCCCCACTACCAATACAAGCTGGGGGATGAAAGGATTGAGCGCAGCCCTGCCGAAAAAGACCTGGGGGTACTGGTGGATGGGAAGCTGGACATGAGCCAGCAATGTGCCCTCGCAGCCCAGAAAGCCAACCGTATCCTGGGCTGCATCAAAAGAAGCGTGGCCAGCAGGTCGAGGGAGGTGATCCTGCCCCTCTACTCTGCGCTGGTGAGGCCTCACCTGGAGTACTGCGTCCAGATGTGGAGTCCTCAGTACAGGAGAGACATGGACCTGTTGGAGCGCGTCCAGAGGAGGGCCACAAAAATGATCCAAGGGATGGAACACCTCTCCTACGAGGACAGGCTGAGAGAGCTGGGGCTGTTCAGCCTGGAGAAGAGAAGGCTNCGAGGTGACCTGATAGCGGCCTTTCAGTATCTAAAGGGGAGCTACAGGAAAGAAGGGGACAGACTCTTTAGCAGGGTCTGTGGTGATAGAACAAGGGGAAATGGCTTCAAGCTCAAAGAGGGTAGATTTAGGTTGGATATAAGGAAAAAGTCTTTTACAGTGAGGGTGGTGAGGCACTGGAACAGGTTGCCCAGAGATGTGGTTGATGCCCCGTCCCTGGAGACTTTCAAGGCGAGGCTGGATCAGGCCCTGGGCAACCTGATCTAGCTGTGGATGTCCCTGTTCATTGCAGGGGAGTTGGACTAGATGACCTTTAAAGGTCCCTTCCAACTCTAAGGATTCTATGATTCTATGATTCTATG >CR1-D2_3end#LINE/CR1 15% (was B5b) 58k 7%_B5a @general @gallus GGCTTTTTATGATGGCGTAACTGCGTCAGTGGACAAGGGAAGAGCCACTGATGTCATCTATCTGGACTTCAGTAAGGCCTTTGACACGGTCCCCCATAACATCCTTCTCTCCAAATTGGAAAGATATGGATTTGATGGGTGGACTGTTCGATGGACGAGGAACTGGTTGCGAGATCGTACCCAGAGAGTGGTGGTCAATGGCTCAATGTCCGGATGGAGATCAGTGACGAGTGGTGTCCCTCAGGGGTCAGTACTGGGACCGGTGCTCTTTAACATCTTCATCAATGACATCGACAGTGGGATCGAGTGCACCCTCAGCAAGTTTGCGGATGACACCAAGCTGTGTGGTGCAGTCGACACGCCCGAGGGACAGGGATGCCATCCAGAGAGACCTAGACAGGCTCGAGCAGTGGGCCCAGGNGAACCTCATGAGGTTCAACAAATCCAAGTGCAAGGTCTTGCACCTGGGTCGTGGCAACCCCCGCTATCAGTACAAGCTGGGGGATGTAAGGATGGAGCACAGCCCTGCCGAAAAGGACCTGGGGGTACTGGTGGATGGCAAGCTGGACATGAGCCAGCAATGTGCCCTCGCAGCCCAGAAAGCCAACCGTATCCTGGGCTGCATCAAAAGAAGCGTGGCCAGCAGGGCGAGGGAGGTGATCCTGCCCCTCTGCTCTGCGCTGGTGAGGCCTCACCTGGAGTACTGCGTCCAGATGTGGAGTCCTCAGTACAGGAGAGACATGGACCTGTTGGAGCGCGTCCAGAGGAGGGCCACAAAAATGATCCAAGGGATGGAACACCTCCCCTACGAGGACAGGCTGAGAGAGCTGGGGCTGTTCAGCCTGGAGAAGAGAAGGCTCCGGGGAGACCTGAGAGCGGCCTTTCAGTATCTAAAGGGGGGCTGTAAGAAAGAAGGGGACAGACTCTTTAGCAGGGTCTGTTGTGACAGGACAAGGGGAAATGGTTTCAAACTAAAAGAGGGGAGATTTAGATTGGATATAAGGAAGAAGTTTTTTACAATAAGGGTGGTGAGGCACTGGAACAGGTTGCCCAGAGAGGTGGTGGATGCCCCATCCCTGGAGACATTCAAGGTCAGGCTGGACGGGGCTCTGAGCAACCTGATCTAGCTGTAGGTGTCCCTGTTCATTGCAGGGGAGTTGGACTAGATGACCTTTAAGGGTCCCTTCCAACTCAAACGATTCTATGATTCTATGATTCTATG >CR1-E#LINE/CR1 12% (was B4) GG000090, GG000292 ~30% different from other CR1s... ORF1 ~208-1497, ORF2 <1644-4430 92k @general @gallus CTCAGTNGTCGAGAGCAGCTGCTTTGGAGCCAGCCTGGNCAGAACCAGAGCAACCGATCTCAAGGTACAAGGAGGTCTCAGGGNTTTCCTTTGCCAGGGAAACACCGAGANAGCAGAGCAACCCTNCAGCAACGGGCAGCTCTCGCGAGAGAGGCTGACACGGCATGGGCATTGCCAGGGCAATGGAGGCCACACCCGCGCCCCTAAAAGAAGCCTCAGGGAGGGCAGCGACTAGTCGCTGCCCACCAAGCACAGGGTGGGCAAACAGAGTGTGGGTGTCACCTGCACACCACTGTGTGCTGCAACAGCCGGAGCAGTAGCTCACACGGCAGGGCACTAAGGTTCTGCCAGCTTCAGAAGCGAGGGGCACTCATTCCAACTGACCCTCGAGGCAGAATGGTGAGCACTCGACGCCGAGCTAAGGCTGCAGCTCTGGCAGGGGGGTATGCACCACCTACCCCGGNCATGACCAGTGCCTCCACCCAGACAGAGCTNCTAAAGGAAGAAGCATCTGTGCAGACCNTGGTCTGTGGGAAGTGTCTGGACCTTGCTCCTGGAGCAGAGGTGAGTGGCAAACTCGCCTGTGTAAGATGTGCCCAGGTGGAGGACCTCCTGCGACAGTTGACTGACCTGCAGGAGACAGTCAAAAGGCTGTGTACTATCAGGGAGGCAGAGATAGAGAGAGTCAGCCGGATTCACGTGCAACCTGCACTGAATCCACAGTCCGGGGCCAAACAGCCCCAAACTCCCCCACTGGCACATCCAGTTGGAGGGGAAGCCAACAGTGATGAGAAATGGCAAATTGCCACGAGAAAGACTAACAAGAGGAAGAAGCCTGCCTCAAAGCCTGAGGTGCCTCTGCAGAACCGCTTCACGGTTCTGCAGACTGAGAAGGAAAAAGAAACNATAACAGGTAAGTCGTCNGAGCTGAGTAAGGCAGCCAGACCTGCTCCCCATTGCATAACAACTACTGCAACTAAGAAAAAGCGACGGGTGATAGTGGTGGGTGATTCTCTTCTGAGGGGTACAGAGGCACCCATTTGTCGCCCTGACCCGCTATCTAGAGAGGTCTGCTGCTTGCCAGGGGCCCGCATCAAGGATGTGACGGAGAGGCTGCCAGACCTTGTACGTCCCACAGACTACTACCCGCTGCTGCTGTTTCACGTAGGCACCAGTGACACAGCTGTCAGCAACCTGAAGAATATCAAGAGGGACTACAAGGAGCTGGGAGCAGCAGTGAAGAACTCGGGAGCACAGGTAGTCTTCTCATCAATCCTCCNGGTTAGGGGAATGGGGAGGGAAAGGACTGACAGAATTAAGAAAATCAATAAATGGCTAAGGGAGTGGTGTCGTGAACAGGGCTTTGGCTACTTATGTCATGGAACTAGTTTTGAGAAATCTGGTCTTCTGGGGGAGGATGGGGTTCATCTCTCAGAGAAGGGGAAGACCATCTTTGGCAGCAAGCTTTCCAATTTAATCAGGAGGGCTTTAAACTAGAGTTGCCGGGGGAGGGGATCCTCAAACCATCCCACTTTGAGGCTGACGATGGTAATGGATGCCCTGGGCCTGGAGTTGGATCACAGGCCAGTAAGACAGCACCTAAGGTGCAGGATAAGGGAACTCCAATTGGTAAATCAGCCTCAATGGGAGCCCAACTCAAATGCCTGTACACTAATGCACGGAGCATGGGGAACAAGCAGGAAGAGTTGCAGGCGTGCGCGTGCCTACAGGGCTATGATGTCATTGGCATCACTGAGACGTGGTGGGATGGCTCTCATGACTGGAATGTAGGAATAGACGGGTATAAACTCTTTAGGAAAGACAGGCAGGGGAGAAGGGGAGGGGGTGTTGCCCTCTACATCAACGACCAGCTGGAGTCCATGGAGCTCCACCTGGGGATAGATGAGGAGCTGACAGAGAGCTTATGGGTTAGGGTTAAAGGGAAGGCAGGGGAAGGAGACATCGTAGTGGGGGTCTGCTACAGGCCGCCTGACCAGGAAGACCGAGTGGATGAGGCCCTCTATAAACAGATAGGAGCAGCTTCACGTTCACAAAACATGGTCCTCATGGGGGACTTCAACCACCCCGATATCTGTTGGAGGGACAACACAGCAGGGCACCAGAAATCGAAGAGGTTCCTGGAATGTGTTGATGATAACTTCCTCTTCCAAGTGGTACAGGAACCCATGAGAAAAGGTGCTATGCTGGACCTTGTCCTCACCAACGAGGAGGGGCTGGTGAGTAATGTGAAGCTCAAGGGCAGCCTTGGCTGCAGTGACCACGAAATGGTGGAGTTCAAGATCCTTAGGGCGTCAAAGAGGGTGCGCAGCAAGCTTGCTACTCTGGACTTCAGGAGAGCAGACTTCGAACTCTTCAGGGAACTGCTTGGCAGGGTGACATGGGANAAAGCCCTGGAGGGAAGAGGGGCCCAAGAAAGCTGGTCAGTATTCAAGGACCATCTCCTCCAAGCCCAGAAGCAGTGCATCCCGAGAAAAAGGAAGGCAGGCAAGAATGCCAGGAGGCCTCCGTGGATCAACAAGGAGCTCCTGGACTTACTTAAGCGCAAAAAGAAAGTCTATAGGGAGTGGAAGCAGGAACGGGTTACCTGGGAGGACTACAAAGAAGTTGTCCGAGCAGCCAGGGATCAGGTTAGGAAAGCTAAAACCCAGACAGAATTAAATCTAGCCAGGGACATAAAGGGGAACAAGAAGAAATTCTACAGGTATATCAGTGATAAAAGGAAGGCCAGGGAAGATGTGGGCCCTCTCCGGAAGGAAACTGGAGACCTGGTCACGAGGGATACGGAGAAAGCTGAGGTGCTCAATGACTTCTTTGCCTCAGTCTTCACCGGCAAGGGCTCTAGCCACACCGCCCAAGCTGCAGAAAGCAAAGGTAAGAACTTGGAGAAGGAAGATCTGCCTGCTGTAAGTGAAGATCAGGTTCGAGACCATCTAAAGAACCTGAAGGTGCACAAGTCCATGGGACCCGATGAGATCCATCCACGGGTTCTGAGGGAACTGGCGGATGAAGTTGCCAAGCCGCTATCCATCATATTTGAAAGGTCATGGCAGTCTGGTGAAGTTCCCACTGACTGGAAAAGGGGAAACATAACCCCCATTTTCAAGAAGGGAAAAAAAGAAGATCCAGGGAACTACAGGCCAGTCAGTCTCACCTCTGTGCCTGGCAAGATCATGGAGCAGATCCTCCTGAAGGCCCTACTAAGGCACATGGAAAATAAAGATGAGGTGATTGGTGGTAACCAACATGGCTTCACCAAGGGCAAGTCATGCCTGACAAACTTGGTGGCCTTTTATGATGGAGTTACAGCGTCAGTGGATAAAGGAAGAGCAACTGACGTCATCTACCTGGACTTGTGCAAAGCGTTTGACACTGTCCCGCATGACATCCTGGTCGCCAAATTGGAGAAAAATGGATTTGATGGATGGACCACTCGCTGGATAAGGAATTGGCTGGATGGTCGCACTCAGAGAGTTGCGGTCAACGGCTCAATGTCCAAGTGGAGACCGGTGACGAGTGGCGTTCCTCAGGGATCGGTGCTGGGACCGGTGTTATTTAACATCTTTGTAGGCGACATGGACAGTGGGATCGAGTGCACCCTCAGCAAGTTTGCAGATGACACCAAGCTGAGTGGTGCAGTTGACACGCTAGAGGGAAGGGATGCCATCCAGAGGGACCTGGACAGGCTTGAGAGGTGGGCCCATGCCAACCTCATGAAGTTCAACAAGGCCAAGTGCAAGGTCCTGCACCTGGGTCGGGGCAATCCCAAGCACAGATACAGGTTGGGCGGAGAATGGCTTGAGAGCAGCCCTGAGGAGAAGGATTTGGGGGTGTCGGTTGATGAAAGACTCAACATGAGCCGGCAATGTGCGCTTGCAGCCCAGAAGGCCAACCGTATCCTGGGTTGCATCAAGAGAAGCGTGACCAGCAGGTCGAGGGAGGTGATTCTGCCCCTCTACTCTGCTCTCGTGAGACCCCACCTGGAGTACTGCGTCCAGTTCTGGGGCCCCCAACACAAGAAGGACATGGAGCTGTTGGAGCGGGTCCAGAGGAGGGCCACGAAGATGATCAGAGGGCTGGAGCACCTCCCCTATGAGGACAGGCTGAGAGAGCTGGGGCTCTTCAGCCTGGAGAAGAGAAGGCTCCGGGGGGACCTTATAGCGGCCTTCCAGTACCTGAAGGGGGCCTACAGGAAAGCTGGGGAGGGACTTTTTATAAGGGCATGTAGCGACAGGACGAGGGGAAATGGCTTTAAACTGGAAGAGGGTAGATTTAGACTAGATATTAGGAAGAAATTCTTTACTGTGAGGGTGGTGAGACACTGGAACAGGTTGCCCAGNGAGGTTGTGGATGCCCCCTCCCTGGAAGCATTCAAGGCCAGGCTGGATGGGGCTTTGAGCAACCTGGTCTAGAGGGAGGTGTCCCTGCCTATAGCAGGGGGTTGGAACTAGATGATCTTAAAGGTCCCTTCCAACCCAAACCATTCTATGATTCTATGATTCTATG >CR1-F#LINE/CR1 (was F1a) 3-4% subst ORF1 183-1304, ORF2 1307-4162 @general @gallus GAAGCTAGCTTCCACCCCCTTAACGCACTAGGTGAGAAAAGGGTGTTACCTTCCACTGTTAACAGGAAGGGAGTCAGTGTGTGAGCACAGCCCACCTGCCCATACTGCAGCAGCAGGTGTGGGAGGTGGGTCTTGTGGCAGGATACGTGAGTGTTTCTTTTGTTCCTTTTGTCTTCGCTTAGGAGACCAGCTCTCCTACGGACAGTCCCTGTGACCTNCAGTTTGAACATGGTCTCTACAGGCAGCGGGCTTGCACCAGGAAGACTGTGGCGACCCAGACAGAGGGCCTGCCCAGAAATGTGGCCGTGCAGGTCTCTGGCTGCAGGGAGTGCCAGAGCCTGCTGCTGCCGAGGGAGGATGGGAAGGATGCCACCTGTGTGAGGTGCGAGCAGGTAGATGAGCTGCTCAGCCTGGTGGTAGAGCTCAGGGAGGAGGTGGAGAGATTAAGAACCATCAGAGAGTGCGAGCGGGAGATTGACTGGTGGAGTGACTCTCTGAGAGAAAGATGCAGAGATTCCGCCCCCCAAACCGTAGTGGACCCTCTCCCTTGCTGTAGTCGAGCACAGAGAGCCGATTCGAGAGGAGAGGAGGAATGGCAGCAGGTCCCAGCTCGGAAACGCAGGCGACCCCCACCCCGACCTACCACGGTTCCTCAGGTGTCTCTACGTAATAGGTTTGATGCCCTGAAACCGGAGGGAGAGGTGAGTGAGGATAAGGTGGGAAGACTGCCTCCAAGTGTGACTAAGGTGAGGAGGTCAGCTCCACGCTTAAAGACTGCCTCCTCCAAAAAAGAAAGGAGGGTGATAGTCGTAGGTGACTCCCTCCTGAGAGGAACAGAGGGCCCGATATGTCGGCCTGACCCTACCCGCAGGGAGGTGTGCTGCCTCCCTGGGGCCCGGGTCAGGGATATTTCCAGGAAACTTCCTGGTCTGATCCACCCCTCTGATTACTATCCGTTATTGATAGTTCAGGCTGGCAGCGATGAGGTTGCTGACAGAAGCCTGAGGGCTATAAAAAATGATTTTAGGGGGCTGGGGAGGTTAGTTGACAATGCAGGCATACAAGTAGTATTTGCAGGTATTCCTACAGTGGCAGGGAAAGATAATGCAGTGACCAGGAAAACCCATCGCATAAACACATGGCTGAGAGGCTGGTGCAAACGCAAGAATCTCGGGTTCTTTGATCATGGGGCGGTCTACTCGGCACCTGGCCTGAGGTCTGCAGATGGGTATCACCTGTCTCAAAGGGGGAAACGGATCCTTGCCCAGGAGCTGGCAGGACTTGTAGAGAGGTCTTTAAACTAGACATGAGGGGGGAAGGGGATAAAACCAGGCCTGCTAGAGATGAGCCTGGGGGAGCGATAATAGGATTAGGGGTGAGGCGAGAGGCCCAGCTAAAGTGTGTCTATACCAATGCACGCAGCATGGGCAACAAACAAGAAGAGTTAGAAGCCATTGTGCAGCAGGCAAGCTATGACCTAGTTGCCATTACGGAAACGTGGTGGGACCACTCCCATGACTGGAGTGCTGCAATGGATGGCTACAAACTCTTCAGGAAGGATAGGCAAGGAAGGAGGGGCGGTGGCGTGGCTCTCTATGTTAAAGAGTGCTTTGAGGTTACTGAACTTATGACTGGGGATAATAAGGTTGAATCCTTATGGGTTAAGATCAGGGGAAGAGCCGACAAGGCAGACATCCTGGTGGGCGTCTGTTATAGACCGCCAAACCAGGATGAAGAGACAGATGAGTTGTTCTATGAGCAGCTGGCGGAAGCTGCGCGATCGCCGGCCCTTGTCCTCATGGGGGACTTCAACTTCCCCGACATATGCTGGGAATACAATTTAGCACAGAAGAAGCAGTCTAGGAGGTTTCTGGAATGTATGGAGGACAACTTCTTGATGCAGATGATAAGAGAACCTACGAGAGGAGCTGCCCCGTTAGACCTGCTGTTCACAAACAGAGAAGGTCTGGTGGGAGATGTAGAGGTTGGGGGCTGTCTTGGGCAGAGTGACCACGACATGGTAGAGTTCTCGATTCTTGGTGGAGTCAGGAGGGGGAACAGCAAAACTGCTACCTTGGACTTCCGGAGGGCAGACTTTGAATTGTTCAGGAGACTAGTAGGGAGAGTCCCCTGGGGCTCAGTCTTAGAGAGTAAAGGGGTACAAGATGGCTGGTTGCTCTTTAAGAAGGAAGTCTTAAAGGCGCAGGAGCAGGCTGTCCCCCTGAGCCGCAAAATGAGCCGGCGCGGAAGAAGACCGGCGTGGATGAATAGGGAACTATTCTTGAGGCTCCAGGAGAAAAAGAGAATCTACCTCCTGTGGAAGAAGGGACGGGCAACCCGGAAAGAATACAAAGAAGTTGTTAAGATGTGCAGGGAGAAAATCAGAAAGGCAAAAGCCCAGCTTGAACTCAACCTGGCTGCTGGGGTAAAAGGGAACAAGAAACTCTTTTACAAGTATATCAACAGTAAGAGGAGGACCAGGGAGAATCTCCATTCTCTACTGGATGAGGCTGGGAATGTGACCACTGAGGATAAGGAAAAGGCAGACGTTCTGAATGCCTTCTTTACATCTGTCTTTAAAAGTCAGACCAGTTATCCTCAGGTTTCTCCACTCTCTGACCTGGCAGCCTTGGCTGGGGAGCAGACTAAACCCCCCACGATTCAGGAGGAAACAGTCAGAGACCTGCTACTCCAACTGGACTGCCACAAGTCCATGGGACCGGATGAGATTCACCCGAGAGTGCTGAGGGAACTGGCGGAGGTGATAGCCGAGCCGCTTTCCATCATCTATCAGCGCTCCTTGTTGACGGGTGAGGTCCCAGAAGACTGGAGGCTTGCCAATGTGACTCCCATCTACAAGAAGGGCTGCAGGGAGGATCCGGGGAACTACAGGCCTGTTAGCCTGACCTCGGTGCCGGGGAAGATTATGGAGCAGATTGTCTTGAGGGAGATCACGCGGCACGTGCGGGACAACCGGGGGATCAGGCCTAGCCAGCATGGGTTCACGAAGGGCAGGTCCTGCTTGACCAACCTGATCTCCTTCTATGATCTAGTGACCCGTCTGGTGGATGAGGGAAAGGCTGTTGATGTGGTCTACCTAGACTTCAGCAAAGCCTTTGACACTGTCTCCCACAGTATTCTCCTGCAGAAGCTGGCAGTCCGTGGCTTGGACAGATACACTCTTGGCTGGGTAAGGAACTGGCTGGAGGGCCGGGCCCAGAGAGTGGTGGTGAATGGAGTTAAATCCAGCTGGCGACCGGTCACGAGTGGTGTTCCCCAGGGGTCGGTGCTGGGGCCTGTCCTGTTTAATATCTTTATTGATGACCTGGATGAGGGCATTGAGTGCACCCTCAGTAAGTTTGCAGATGACACCAAGCTGGCTGGAAGTGTTGATCTGCCTGAGGGTAGCGAGGCCCTACAGAGGGATCTGGATAGGCTGGATAGCTGGGCTGAAGCCAATGGGATGGGATTCAACAAGACCAAATGCCGGGTCCTGCACTTTGGCCACAATAACCCCAGGCAACGCTACAGGCTTGGGGCAGAGTGGCTGGAAGACTGTGTAGAGGAAATGGACCTGGGGGTGTTGATTGACGCTAGACTGAACATGAGCCAGCAGTGTGCCCAGGTGGCCAAGAAGGCCAATGGCATCCTGGCTTGTATCAGAAATAGTGTGGCCAGCAGGAACAGGGAAGTAATTGTCCCCCTGTACTCAGCACTGGTGAGGCCGCACCTCGAGTACTGTGTCCAGTTTTGGGCCCCTCACTGTAAGAAAGACATCGAGGCCCTGGAGCGTGTCCAGAGGAGGGCAACAAAGCTGGTGAGGGGTCTGGAGCACAGGCCTTATGAGGAGCGGCTGAAGGAGCTGGGATTGTTCAGTCTAGAGAAGAGGAGGCTCAGGGGAGACCTTATTGCTCTCTATAACTACCTGAAGGGAGGTTGTAGTGAGCTGGGGGTCAGCCTCTTCTCTCGTGTGACTAGTGATAGGACTAGAGGGAATGGCTTCAAGCTGCGCCAGGGAAGATTCAGGCTGGACGTTAGGAAATACTACTTCTCTGAAAGGGTGGTCAGGCACTGGAATGGGCTGCCCAGAGAGGTGGTGGAGTCACCGAGCCTGGTGGTGTTCAAAGAGCGTTTGGATGTTGTGTTGAGGGACATGGTTTAGCGAGAACCATTGGTGAAGGGCGAATGGTTGGACTGGATGATCCTGTGGGTCTTTTCCAACCTTAGCGATTCTATGATTCTATGATTCTATG >CR1-F0_3end#LINE/CR1 3% (was F1b) 27k 2%_F1a @general @gallus CTCCTTCTATGATCCAGTGACCCGTCTGGTGGATGAGGGAAAGGCTGTTGATGTGGTCTACCTAGACTTCAGCAAAGCCTTTGACACTGTCTCCCACAGTATTCTCCTCCAGAAGCTGGCAGATCGTGGCTTGGACAGATACATTCTTCGCTGGGTAAGGAACTGGCTGGAGGGCCGGGCCCAGAGAGTGGTAGTGAACGGAGTTAAATCCAGCTGGCGACCGGTCACGAGTGGTGTTCCCCAGGGGTCGGTGCTGGGGCCTGTCCTCTTTAATATCTTTATTGATGACCTGGATGAGGGCATTGAGTGCACCCTCAGTAAGTTTGCAGATGACACCAAGCTGGCTGGAAGTGTTGATCTGCCTGAGGGTAGCGAGGCCTTACAGAGGGATCTGGATAGGTTGGATAGCTGGGCTGAAGCCAATGGGATGGGATTCAACAAGACCAAATGCCGGGTCCTGCACTTTGGCCACAATAACCCCAGGCAACGCTACAGGCTTGGGGCAGAGTGGCTGGAAGACTGTGTAGAGGAAATGGACCTGGGGGTGTTGATTGACGCTAGACTGAACATGAGCCAGCAGTGTGCCCAGGTGGCCAAGAAGGCCAATGGCATCCTGGCTTGTATCAGAAATAGTGTGGCCAGCAGGAACAGGGAAGTAATTATTCCCCTGTACTCAGCACTGGTGAGGCCGCACCTCGAGTACTGTGTCCAGTTTTGGGCCCCTCACTGTAAGAAAGACATCGAGGCCCTGGAGCGTGTCCAGAGGAGGGCAACAAAGCTGGTGAGGGGTCTGGAGCACAGGCCTTATGAAGAGCGGCTGAAGGAGCTGGGGTTGTTCAGTCTAGAGAAGAGGAGGCTCAGGGGAGACCTTATTGCTCTCTATAACTACCTGAAGGGAGGTTGTGGTGAGCTGGGGGTCAGCCTCTTCTCCCGGGTGACTAGTGATAGGACGAGAGGGAATGGCTTCAAGCTGCGCCAGGGAAGGTTCAGGCTGGACGTTAGGAAATACTACTTCTCTGAAAGGGTGGTCAGGCACTGGAATGGGCTGCCCAGAGAGGTGGTGGAGTCACCGAGCCTGGTGGTGTTTAAAGAGCGTTTGGATGTTGTGTTGAGGGACATGGTTTAGCGAGAACCATTGATGAAGGGCGGATGGTTGGACTGGATGATCCTGTGGGTCTTTTCCAACCTTAGCGATTCTATGATTCTATGATTCTATG >CR1-F2_3end#LINE/CR1 8% (was F1c) 41k 2%_F1a @general @gallus CTCCTTCTATGATCTAGTGACCCGTCTGGTGGATGAGGGAAAGGCTGTTGATGTAGTCTACCTAGACTTCAGCAAAGCCTTTGACACTGTCTCCCACAGTATTCTCCTGCAGAAGCTGGCAGCCCGTGGCTTGGACAGGTACACTCTTGGCTGGGTAAGGAACTGGCTGGAGGGCCGGGCCCAGAGAGTGGTGGTGAATGGAGTTAAATCCAGCTGGCGACCGGTCACGAGTGGTGTTCCCCAGGGGTCGGTGCTGGGGCCTGTCCTCTTCAATATCTTTATTGATGACCTGGATGAGGGCATTGAGTGCACCCTCAGTAAGTTTGCAGATGACACCAAGCTGGCTGGAAGTGTCGATCTGCCTGAGGGTAGCGAGGCCCTACAGAGGGATCTGGACAGGCTGGATAGCTGGGCTGAAGCCAATGGGATGAGGTTCAACAAGACCAAATGCCGGGTCCTGCACTTTGGCCACAACAACCCCAGGCAACGCTACAGGCTTGGGGCAGAGTGGCTGGAAGACTGTGTAGAGGAAATGGACCTGGGGGTGTTGATTGACGCTNGACTGAACATGAGCCAGCAGTGTGCCCAGGTGGCCAAGAAGGCCAATGGCATCCTGGCTTGTATCAGAAATAGTGTGGCCAGCAGGAACAGGGAAGTAATTGTCCCCCTGTACTCAGCACTGGTGAGGCCGCACCTCGAGTACTGTGTCCAGTTTTGGGCCCCTCACTGTAAGAAAGACATCGAGGCCCTGGAGCGTGTCCAGAGGAGGGCAACAAAGCTGGTGAGGGGTCTGGAGCACAGGCCTTATGAGGAGCGGCTGAAGGAGCTGGGATTGTTCAGTCTGGAGAAGAGGAGGCTCAGGGGAGACCTTATTGCTCTCTATAACTACCTGAAGGGAGGTTGTAGTGAGCTGGGGGTCGGCCTCTTCTCTCGTGTGACTAGTGATAGGACTAGAGGGAATGGCTTCAAGCTGCGCCAGGGAAGGTTCAGGCTGGACGTTAGGAAATACTACTTCTCTGAAAGGGTGGTCAGGCACTGGAATGGGCTGCCCAGGGAGGTGGTGGAGTCACCGACCCTGGAGGTGTTCAAGGAACGTTTGGATGTTGTGTTGAGGGACATGGTTTAGTGAGAACTATTGGTGATGGGTGGATGGTTGGACTGGGTGATCCTGTGGGTCTTTTCCAACCTTGGTGATTCTATGATTCTATGATTCTATG >CR1-G#LINE/CR1 80% similar to CR1-F ORF1 220-1296, ORF2 1353-4151. 7-8% subst level (CR_J of Wicker) @general @gallus AGCTAGCTTCTGCCCACAGAGCACAGCAGGTGAGTAACCGTTGTCGCTGCCCACTGAGAACGGGGAGGTTCAGTGAGTGAGCACAGCCCACACTGCCCATACGGTGCTGCAGCTGTGGGTGTGGGAGGTGGGTCAAGTGGTGAGGAGTGTAAGTGTTGTCCCTCCTTGCTCAGGAGACTGGCTTTCCTCTTGGCAGTCTCTGAGACCGCAGGCCTAAACATGGTCTCCACCAGACAGCAGGCTTATTCCAAGAAGACCGTGGCGACCCAGACGGAGGGCCTGCCCAGAAATGTGGCTGTTCAGGTCTCCGGCTGCAGGGAGTGCCTGAGCCTGCTGCTGCCCGGGGAGGGTGGCAGGGATTCCACCTGTGTGAGGTGTGAGCAGGTGGATGAGCTGCTCAGCCTGGTGGTGGAGCTCAAGGAGGAGGTGGAAAGACTAAGGACCATCAGGGAGTGTGAGCGGGAGATCGACTGGTGGAGTGACTCGCTGGCGTGCCAGAGGGAAGGGTGCCAGGGAGATACCCCCAGAAAAGTGGTTGACCCCCTGCCCTGTCACAGTCGGACAGACCTGACNGATGAGGAGGGTTGGAAGAGAGTCCCGACTCGGCGTCACGGGAGCCCCCCCCGCCTGCCTACCCCGCTTCCCCAGCTCCCACTAAGCAACAGGTTTGAGATGCTGGAAATTGAAGGGGAGGTGAGTGGGGAGGCGATGGAGGATCTGCCTAGGAGGGAGCCTAAGGCGAGGCGGTCACCCCCACGCCTTGAGACTGCCTCTGTCAGGAAAGAAAGAAGGGTGGTCGTGGTGGGCGACTCCCTTCTCAGAGGAACGGAGGGCCCCATATGCAGACCGGACCCGAGCCGTCGGGAAGTGTGCTGCCTTCCTGGGGCCCGGGTCAGGGACATAACTAGAAAACTCCCAAAGCTGGTTAGGTCCACTGATTACTTTCCATTACTCATAGTTCAGGTGGGCAGTGATGAAATTGCTCAGAGAAGCCTACGAACTATGAAAAGAGATTTCAGGGGTTTAGGGCGTTTAGTTCAAGGAGTGGGAGCTCAAGTGATCTTTTGTTCTATACCTTCAGGGGCAGTGAGGGACACGGAGCGGGCTTGGAAAGCACAAGTAATGAATAATTGGCTCAGAGGCTGGTGTCGAGGCAGAAACTTTGGGTTCTTTGATCATGGGGCAGTTTACTCGGCCCCTGGCCTGTTGTCCGTGCATGGAACCCACCTATCTCAAAGGGGGAAACGAATCCTAGCGCAGGAGCTAGCAGGGCTTATCGAAAGAGCTTTAAACTAGCTACGACGGGGGAAGGGGACAAAACAGGGCTCACCAGAGATGAGCCTAGGGGAACGATGCTTGAGCTGGGGGTGAGGCAGATGACTCGGCTGAAGTGCATCTACACCAATGCACGCAGCATGGGCAACAAGCAGGAGGAGCTGGAAGCGATTGTGCGGCAGGCTAACTATGACCTAGTTGCTATTACCGAAACATGGTGGGACCACTCCCATGACTGGAGTGCTGTGATGGATGGCTACAAGCTCTTCAGAAGGGATAGACGAGGAAGGAAGGGTGGTGGTGTGGCCCTTTATATTAAAGANTGTTTTGATGTTGAAGAGCTTGGGGTTGGGAATGATAAAGTTGAGTGTCTGTGGGTAAGGATCAGGGGGAAGGCCTGTAGGGGCGACATCTTGGTGGGGGTCTGTTATAGACCGCCTAATCAGGATGAAGAGANGGACGAGGCATTCTATGAGCAGCTTGCGGAAGTCGCGCGATCGCCAGCACTCGTTCTCATGGGAGACTTCAACTTCCCTGATATATGTTGGAAATATAATACAGCGCAGAGGAAGCAGTCCAAGAGGTTTCTAGAGTGCGTGGAAGATAGCTTCCTTACGCAGCTGGTACGAGAGCCTACCAGGGGTGGTGCCCTGCTAGACCTGCTCTTCACTAACAGTGAAGGACTGGTGGGAGATGTGAAGGCTGGGGACTGTCTTGGGCAGAGCGACCATGAAATTGTAGAATTCTCTATTCTTGGAGATGTCAGAAGGGTGACTAGCAAAACTGCTATCTTGAACTTCCAGAGGGCGGACTTTGACCTGTTCAGGACGCTTGTNGCANGGGTCCCTTGGGAGTCGCTCCTTAAGGGTAAAGGGGTCCAGGAAGCCTGGACGCTCCTCAAGATGGAAATCTTAAAGGCACAAGAACAGGCTGTCCCTGAATGCCGTAAGGCGAGCCGTAGGGGAAGAAGACCGGTGTGGATGAACCGGGAACTACTGTTGAGACTCCGGAAGAAAAAGAGAGTCTATGTCCTCTGGAAGAAGGGACAGGCTACTTGGGGAGATTACAAGGAAGTTGCTAAGGTATGCAGGGAGGAAGTTAGGAAGGCAAAAGCCCAACTTGAACTCAGATTGGCCACTGCAGTAAAAGAGAATAAGAAATCCTTTTACAAATATATCAGCGGTAAGAGAAGAACCAAGGAGAATTTCCATCCTTTACTTGATGCAGCGGGGAATGTGACCACTGAGGATAAGGAGAAGGCTGAGGTCCTCAACGCCTTCTTTACATCTGCCTTTAATAGGCAGATCAGTTATCCTCAGGGCACTTTACGCCCTGATCTGGAAGTCTGGGATGCTACGCAGAATACACCCCCGGTGATTCAGGTGGAGACAGTTAGAGAGCTCCTCCTCCATCTGGACTGTCACAAGTCCATGGGACCGGACGGGCTCCACCCTAGGGTGCTGAGGGAGCTGGCGGGGGTGATTGCCGAGCCGCTCTCCGCCATCTACCAGCGCTCCTGGTTATCTGGAGAGGTCCCAGAGGACTGGAGGCTTGCCGATGTGACTCCCATCTACAAGAAGGGCCGTAAGGAGGATCCGGGGAACTACAGGCCTGTCAGCCTGACCTCGGTACCAGGGAAAGTTATGGAGCAAATCATCTTGGGTGAGATCACACGGCACGTGCGTGGCGTCCAGGGGATCAGGCCCAGCCAGCACGGGTTCATGAAAGGCAGGTCGTGCTTGACCAACCTCATCTCCTTCTACGACTGGGTGACCAGACTGGTAGACGAGGGAAAGGCTGTTGATGTAGTCTACCTAGACTTCAGCAAAGCCTTTGACACGGTCTCTCACAGTATTCTCCTGGGGAAACTGGCTGCCCGTGGCCTGGACAGGTATACCCTTCTTTGGGTAAGGAACTGGCTAGAGGGCCGTGCCCAGCGGGTAGTGGTTAATGGAGTTAAGTCCAGCTGGCGACCCGTTACAAGTGGTGTCCCCCAGGGGTCGGTACTGGGGCCCATCTTGTTTAATATCTTTATTGATGACCTAGATGAGGGGATTGAGTGTACCCTCAGTAAGTTTGCAGATGACACCAAGTTGGGAGGTGGTGTCGATCTGCCTGAGGGTAGGGAGGCCCTTCAGAGGGATCTAGATAAGCTGGATCGCTGGGCTGAGGTGAATGGGATGAGGTTCAACAAGGCCAAGTGCCGGGTCCTGCACTTTGGCCACAATAACCCCATGCAGCGCTATAGGCTTGGGGCTGAGTGGCTGGATGACTGTGAAGAGGAAAGGGACCTGGGGGTGTTGGTTGATGCTCGGCTGAACATGAGCCGACAGTGTGCCCAGGTGGCCAAGAGGGCCAATGCCATCCTGGCCTGCATTAGAAATAGTGTGGCCAGCAGGAGCAGGGAGGTAATCATCCCCCTGTACTCAGCACTGGTGAGGCCGCACCTCGAGTACTGTGTTCAGTTTTGGGCCCCTCACTACAAGAAAGACATTGAGGCCCTGGAACGTGTCCAGAGAAGGGCAACGAAACTGGTGAGGGGTCTGGAGCACAAGTCTTATGAGGAGCGGCTGAGGGAGCTGGGATTGTTTAGTCTGGAGAAGAGGAGGCTCAGGGGAGACCTCATTGCACTCTACAACTTCCTGAAGGGAGGTTGTGATGAGGAGGGGTTTGGCCTCTTCTCCCAGGCAACAAACAGGACCCGAGGAAATGGCCACAAGTTGTACCAGAGGAGGTTTAGATTAGACATAAGGAAAAACTTTTTCTCTCAGAGAGTGGTCAGGCACTGGAATGGCCTGCCCAGGGAGGTGGTGGAGTCGCCGTCCCTGGCAGTGTTCAAGAGGCGTCTGGATGAGGAGCTACGAGATATGGTTTAGTGGCTTGTGGTAGCAATGGTAATGGGAGGACGGTTGGACTAGATGATCTTGTAGGTCCTTTCCAACCTTGTGATTCTATGATTCTATGATTCTATG >CR1-H#LINE/CR1 9% subst level (combines H1 and 2?) (H1 sub 7.5% subst) ORF1 488-1705, ORF2 1693-4716 3' end 80% similar to CR1-F 3' ends. Fragments described by Wicker (bp 549-3202, 4182-4735) GG000009, GG000218, GG000261, GG000321, GG000948 @general @gallus TTGATNGCCGAGGTTCGCTGCTTCGGAGCTGTCCCGGCCAGAACCGCAGCGACTGACCGCGAGGTACAGGGGGGTTTCGGTCGGTTCCTTCATCCAGGGAACCCCGAGATAACAGAGCAGCCCGGCAGCTCTCGCGAGAGCGGCTGACGTGGCGTGGGCGTTGCCNGGGCAACGGCTCTGCATCCACGCCCCCTTGCCTNGAAAAAGCCTCGGGGACGGAGAGGAGGAGTCAGGGTGTGTGAATCACGTGGGCCGTTCAAACGCGGAGAAACCGTAAGCCACCCATTCACGGGACTACACAGTGAGGAGGGTTGCTATCACTGCGAAGCGAGTGATAAGTGCGGGGGCACCTGTTAACGGCCTGGTAACGGGGCGAGGGCGGTGCCAGCACTACCGGCAGCAGGGCAGAGCTGATCAGTCACACCCCATTAAGGCTACCCGAATAGTGCTAGTGAGTCTGCTGGTTTGCCATGGCTGCACCCCGGCGGAAGGCTGCTGCCAGGAAAAATGTGGAGACCCAGACNGAGGTCCCATGCACACATGAAAGGAAGGCTGCTGCCAAGAAAAATGTGGAGACTCAGACTGAGGTCCCGAAACAAGATGCTAGTGCGCAGGTCTCTGGCTGTAGTGAGTGCCAGAGCCTGGCCTTTGCAGTGCTAGGTGAGGGAGACAGCACTTGTGTAAGATGCGACCAGCTAAATGACTTACTCAGCCTTGTGGTTGACCTGAAGGAGGAGGTGGAGAGGCTGAGGAGCATAAAGGAATGTGAGAGGGAGATTGATTGGTGGTGCCAAACCCTATCGGCCCCGAGATCTTGGCAGCCAGCTGAGGCTCCACATGGAGCACGTCACCCCCTGCCGCCTTGCAAACAGGTGACAGAGGGGAACCAGCAGGCAGACAGTGTTCCTGCTGCAGTGAGCCCCCTGTCCTCTCCTCCCCCTAGCAACAACGGTGAAGAATCGGGGGGTGTGGGGCAGTGGCAAAAGGCCCCTGCTCGGCGATGCAGGCGCGCCCTCCCAGAGATTCCCCTGCCTCCCCAGCTGCCCCTGCGGAACAGGTACAGTGCTCTGCAGGGACAACTGGACAATGGTGGTGATGATGGTTCTCCCCAGTTGGTGGTGTTACCAAAGTCTAACCAGACCTCACTTAGCATTAAAACCTCATCGGCAAAGAAAAAACGACGGGTCATTGTCATTGGTGACTCTCTGCTGAAGGGAGCAGAAGGGCCAATATGTAGACCAGACCCTCTACACAGGGAGGTCTGCTGCCTCCCGGGAGCCCGGGTTAAAGACGTAAGGAAGAAACTTCCTTCCCTAGTTCGGCCCTCAGATTACTATCCCCTATTGTTGTTTCAGGTAGGCAGCGATGATATAGGAAGAACTTCCCTAAGGACTATGAAAAAGGACTTCAGAGCCTTGGGGCGACAGGTAAAGGGTTCAGGAGCACAAGTTGTGTTCTCCTCTATCCCTCCAGTTATAGGGAATGATGAGGGACTAAATATGATGGGCCAACGGATTAATACCTGGCTCCGAGCCTGGTGTGCCCGGCAGGGGTTTGGGTTTTTTGACCTCTGCTCTGTTTGCACGAGACCAGGCCTGCTGGCAACCGATAGGAGTAGCTTCTCCCACCGGTGGAAAGGGGTCTTAAGACGGGAGTTGGGAAGGTTCATTGATAGAGCTTTAAACTAGGTACGAAGGGGGGTGGGGGTGTAACTGGGGTCACTAGAACGGAGCCTGTATGTAACGTCCCAGTGCTTGTAGGAGAGGGATGTGCTAGTAAGATCCCACAGTCTTGTGTCTTGGTGAAGGAGGAGGACGACTCACCCTTTTGTAGGAAGAACACGAGGGTTGGTGTGAGGTTGGTGGCTGTGGAAACACCTGAGTATGGTCATGAGGGTATTAGGGCTACTGCCACTCAAAAGGAGGCCCAGCTCAGGTGCCTTTACACTAATGCACGCAGCATGGGTAATAAACAGGAGGAGCTGGAGGCCATTGTGCGGTCGGAAAGCTATGATATAGTCGCCATCACGGAAACGTGGTGGAATGACTCGCACAGCTGGAGTGCTGTGATGGATGGCTACCGACTTTTCAAAAGAGACAGGCAAGGCAGGAAAGGCGGTGGTGTAGCCCTCTATGTTAAGAAAGAATGTGAATGTATGGAAATTAATGATGGTGATGATAGGGTTGAGAGCTTATGGGTCAGAATAAAAGCGAAGGCCAATAAGACTGATATTATCGTGGGAGTCTGCTACAGGCCACCCAACCAGGATGAAGAGGTGGACAAGACACTTTATAGACAGTTGGGTGAGGTCTCAAGGTCNCTCCCCCTTGTTCTTGTGGGGGACTTCAACTTCCCAGACATCTGCTGGATTTATAATACAGCAGATAGGGAACAGTCCCGGAGGTTCCTAGAGTGTGTGGGAGATAACTTCCTGACACAGCTGGTGAGGGAGCCAACGAGGGGAAGCAAAATCCTGGACCTGCTGTTTGTTAACAGAGAAGGTCTTGTGGGGGATGTAAAGGTTGGAGGCCGTCTGGGGCATAGTGATCACGAGATGCTAGATTTCTCGATCCTTGTTGAACCACGGAGGGGAGTCAGCAGAACTGCCACCTTGGACTTCCGGAGGGCAGACTTTAACCTCTTTAGGACCATGGTTGAGAGGGTCCCTTGGGAGGTAGTTTTGGAGAGCGTGGGAGCCCAGGAAGGCTGGGAATACTTTAAGGAAGTNATTTTAAAGGTGCAGGAGCTGACCATCCCCAAGTCACGGAAGACGAGCCGACGGGCAAGGAGGCCGGACTGGCTGAACAGAGACCTTTGGCTGGAACTCAAGAACAAAAGGAAAGTTTATGGTCTCTGGAAGAGTGGGCAAGCTACTTATGATGATTACAGGTACGTAGTGAAGCTGTGCAGGGAGAAAATTAGAAAAGCCAAAGCCCAGCTAGAACTGAACTTGGCCACTAAGGTAAAGGACAACAATAAATATTTCTATAAATACATCAACAGCAAGAGGAGGGCTAGGGAGAATCTCCATCCCTTGTTGGATGCCGAGGGCAACTTGGTGACCAAGGATCAGGATAAGGCTGAGGTACTTAATGCCTTCTTTGCCTCAGTCTTTAATAGTAAGACTTGTTACTCCCTGGGAACACAGCCCCCTGCGCTGGTAGATAGGGATGGGGAACAGAATAGGCCCTGCATGATCCACGATGAGATGGTTTTGGACCTGCTCCGAAAGCTGGATGCTCACAAGTCCATGGGGCCGGATGGATTGCACCCTAGAGTGCTGAGGGAGTTGGCGGATGTGGTTGCCAAGCCACTCTCCATCATCCTTCGGCAGTCCTGGCTAACCGGGGATGTCCCGGCGGACTGGAGACTGGCAAATGTGACGCCCATCTTCAAAAAGGGCCGGAAAGATGATCCTGGTAGCTACAGACCTATCAGTCTCACCTCGGTGCCGGGGAAGGTTATGGAACGGATAATCTCGGGAGCCATCATGGACCAGTTAAAGGTCAACCAGGGGATCAGGCCCAGTCAGCATGGGTTTACGAATGGTAGATCCTGTCTGACAAACCTGATTTCATTCTATGACAAGGTGACCCGCTTAGTGGATGAAGGTAAGGCTGTCGATGTGGTCTACCTGGACTTCAGTAAAGCCTTTGACACTGTCCCCCACAACATTCTCGTGGAGAAGCTGGCTGCCCACGGTTTGGATGGGCGTACGCTCCGCTGGGTGAAACACTGGCTGGATGGCCGGGCCCAAAGAGTTGTGGTCAATGGAGTTAAATCCAGTTGGCGGCCGGTCACGAGCGGTGTCCCCCAGGGCTCGGTACTGGGGCCGCTTCTATTTAACATCTTTATTAACGATCTTGATGAGGGGATTGAGTGCACCCTCAGTAAGTTTGCAGACGACACCAAGTTGGGAGGGAGTGTTGATCTGCCTGAGGGGAGAAGGGCACTACAGAGGGACCTGGATAGACTGGATCGATGGGCCAAGGTNAACTGTATGAGTTTCAATAGGGCCAAGTGTCGGGTCCTGCATTTTGGTCACAACAACCCCAGGCAACCCTACAGGCTTGGGGAGGAGTGGCTGGAAAGCTGCCTGATGGAAAGGGACCTTGGTGTACTGATGGACAGTCGGCTGAATATGAGCCAGCAGTGTGCCCAGGTGGCCAAGAAGGCCAATGGCATCCTGGCTTGTATCAGGAATGGTGTGGTGAGCAGGACTAGGGAAGTCATCCTGCCCCTGTACTCGGCACTGGTGAGGCCTCACCTCGAGTACTGTGTTCAGTTTTGGGCACCTCAGTACAGAAAGGACATTGAGGTGCTGGAGCAGGTCCAAAGAAGGGCAACAAGGCTTGTGAAGGGCTTGGAGAATATGCCCTACGAGGAGAGACTGAAGGAACTGGGGCTGTTTAGTCTGGGGAAAAGGAGGCTGAGGGGAGACCTTATTGCTCTCTTCCAATATCTGAAAGGTGCTTACAGCGAGAGCGGGGTTGGTCTCTTCTCACTGGTGACAGGTGACAGGACGAGGGGAAATGGCCTCAAGTTGCGCCAGGGTAAGTTTAGGTTGGATATCAGGAAANACTTCTTTACAGAAAGGGTTGTTAAGCACTGGAATAGGCTCCCCAGGGAGGTGGTTGAGTCACCATCCCTGGATGTGTTTAAAAACCGTTTGGATGTGGTGCTCAGGGACATGATTTAGCGGAGGGTTGTTAGAGTTAGGGTAGTATGGTTAGGTCGTGGTTGGACTCGATGATCTTTAAGGTCTTTTCCAACCTGAGCGATTCTATGATTCTATGATTCTATGATTCTATG >CR1-H2_3end#LINE/CR1 4.5% 41k 5%_H1 @general @gallus TTCATTCTATGACAAGGTGACCCGCTTAGTGGATGAGGGTCAGGCTGTCGATGTGGTCTACCTGGACTTCAGTAAGGCCTTTGACACTGTCCCCCATAACATTCTCGTGGAGAAGCTGGCTGCCCATGGTCTGGATGGGTGTACGCTCCGCTGGGTGAAGCACTGGCTGGATGGCCGGGCCCAAAGAGTCGTGGTCAATGGAGTTGAATCCAGTTGGCGGCCGGTCACGAGCGGTGTCCCCCAAGGCTCAGTGCTGGGGCCGCTTCTGTTTAACATCTTCATTGATGATCTTGATGAGGGGATTGAGTGCACCCTCAGTAAGTTTGCAGACGACACCAAGCTGGGAGGGAGTGTTGATCTGCCAGAGGGGAGAAGGGCACTACAGAGGGACCTGGATAGACTGGATCGATGGGCCAAGGTTAACGGCATGAGTTTCAATAGGGCCAAGTGTCGGGTCCTGCATTTTGGTCACAACAACCCCAGGCAACCCTACAGGCTTGGGGAGGTGTGGCTGGAAAGCTGCCTGATGGAAAGGGACCTTGGTGTACTGTTGGACAGTCGGCTGAATATGAGCCAGCAGTGTGCCCAGGTGGCCAAGAAGGCCAATGGCATCCTGGCTTGTATCAGGAATGGTGTGGTGAGCAGGACTAGGGAAGTCATCCTGCCCCTGTACTCGGCATTGGTGAGGCCTCACCTCGAGTACTGTGTTCAGTTTTGGGCACCTCAGTACAAGAAGGACATGGAGGTACTGGAGCAGGTCCAGAGAAGGGCAACGAGGCTAGTGAAGGGCTTGGAAAATCAGCCCTATGAGGAGAGGCTGAGGGAGCTGGGGCTGTTTAGTCTGGGGAAGAGGAGGCTGAGGGGAGACCTTATTACTCTCTTCCAGTACCTGAAAGGTGTTTACAGTGAGAGCGGGGTAGGTCTCTTCTCACTGGTGACAGGTGACAAGACGAGGGGAAATGGCCTCAAGTTGCGCCAAGGTAAGTTTAGGTTGGACGTTAGGAAACACTTCTTTACAGAAAGGGTGGTTAAGCACTGGAATAGGCTCCCCAGGGAGGTGGTTGAGTCACCGTCCCTGGATGTGTTTAAGAGCCGTTTGGATGTGGTGCTCAGAGATATGATTTAGCGGAGGGTTGTTAGAGTTAGGGTACTATGGTTAGGCTGCGGTTGGACTTGATGATCTTTGAGGTCCTTTCCAACCTGAGTAATTCTATGATTCTATGATTCTATGATTCTATG >CR1-X#LINE/CR1 (was X1c) ORFs not finished, ORF2 ~1422->3662; each sub seems to have real frameshifts after that, but probably not. 20% subst (because of subs; X1c 3end has 15% subst) @general @gallus TTCCAGCAGTGGTTGTAACCCGCTCGCAAGGAGCTCCGGTCATGGCATCCACTCGGCAGAAAGCCATGTCCTCTGTGTCCCCTGTGGCCTCTCCAGCCACAGGAACCGACGCGGCTACCCAGACGGAGCTCCCGAGGGAACACGCGGCCATCCAGGTCTCAGGCTGCAGGGTGTGCCCGAGCTTTCNGTCAGTGTCTGATGGCAGCAGTGAGNACACCTGTGGGAGGTGCGCCCAGGTNGAAGAACTGCTCAGCCTGGTGACAGAGCTTCGGGAGGAGGTGGGCAGGCTGAGGAGCATCAGGGAGTCGGAGAAGGAGATCGACTGGTGGAATCGTACTCTGCCATCCCTGAGACAGACGCGTCAGCCAGCCACAGCACAAGAAACGAGGGATCCCCTGCCCTCTCGCCACCAGGCAGAAGGAGGGGACCTAAGAGACAGGGAGAATGGAAGCAGGTTTCTGCTCGGGGCGGCAGGTGAATCCCCTCCCTGCCTACCTCACCCTCCCAGGTGCCCTTATACAACAGGTATGAGGCTCTGGAACTTGATGGACAGGCAAACGATGATGTGGATGAAGGTCCATCCAGGTTGGAGGGGTCACCTAGGGCTAGTCAGCCTATCCCCCGTATCACGACCACCTCCGTCAAGAAAAAAAGAAGGGTTGTTGTCATAGGTGACTCCCTTCTGAGGGGAACAGAGGGCCCGATATGCCGACCAGACCCGACCCATAGGGAAGTCTGCTGCCTCCCTGGGGCCCGGGTAAGAGACGTTACTAGAAAACTCACTAGCCTGGTACGGCCCTCTGATTATTATCCATTATTGGTTTTTCATGTCGGCAGCGATGAAGTAGCAAAGAGAAGTCCAAGGGCAATCAAAAGGGACTTCAGGGCCTTGGGGCGATTGGTTAAAGGATCGGGGGCACAGGTAGTGTTTTCCTCTGTCCTTCCAGTAGCAGGGAACAATATTGAAAGGAACAGGCAGACCCAGCTGATCAATACGTGGCTCCAAGGCTGGTGTCACCGGCAGAATTTTGGGTTTCTTGATCATGGGATGGTCTACACAACACCAGGCCTGCTGGCGCCTGATGGGATGCACCTTTCTCAGAGGGGGAAAAGGATTTTTGTGCAGGAGTTAGCAGGGCTGATCGATAGAGCTTTAAACTAGATTTGAAGGGGGAAAGGGATAAAACCAGGCTCGCCAGTGATAAGCTATGGGACGGCACGCCAAAATTTGAGGGACTGCGTGCTAGTGAGATCCTTCAGTCTGCTCCACGAGGTGCTGGGTACAATGAAGCACATTTGAAATGTTTCTACACCAATGCACGCAGCATGAGGAACAAGCAAGAGGAGCTAGAAGCCTTGGCTCAGTCCCAGAGCTACAACATCATTGGCATAAGCGAAACCTGGTGGGAAGAGTCCTGTGACTGGTGTGTCACGATGGACGGTTCCGGGCTCTTCAGNAGGGACAGGCAGGGCAGGNGAGGCGGGGGGTGGCGCTGTGTGTGAGGGAGGGGCTGGGCTGTACGGAGCTCGCAGTTGGCGATGACACAGTTGAGAGCCTCTGGGTAAGGATTAAGGGACAAGCAAATAAAGCGGATGTCGTTGTGGGAGTCTACTATAGGCCACCCAGCCAGGATGATGACACCGATGAATTATTCTTTAAGGAACTAAGAGATACCTCTAGATCAGCCGCCCTTGTCCTTATGGGTGACTTCAACTTGCCAGACGTTAACTGGGAATACCACACAGCTGATACAAACAGGTCCAGGAGATTCCTAAAACACCTTGATGATAACTTCCTGGTACAGGTACTAAGGGAGCCGACTAGGAAAGGTGCCCTCCTAGATTTGTTGCTTGTAAACAGAGAGGGTCTCGTGGGTGAAGTGGCGATTGGTGGCCGTCTTGGCCATAGTGACCATGAAGTAGTCGAATTTAAAATCTTTGGTGATAGGAGGAAAACTGCCACCAAAACTTCAACCCTGGATATGGGGAGAGCAGACTTCAGGCTGCTCAGGGAACTAGTTAGCAAGGTCCCCTGGGAAACTGCTTTTGAAGGCATTGGGGTCCATCAGTGCTGGTCACTTTTTAAGTACCACCTCTTAAGAGCACAGGAACAGGCAATTCCAAAATGTCGGAAGTCAAGCAGGCGGGGCAGAAGGCCGGCTTGGCTGAGCAGGGATCTTCTTCTAGAGCTTAGGCGGAAAAAGAAAGTGTATGGCCACTGGAAGCGAGGTCGGGCGACATGGGAGGACTACAGAGATGCTGTTCGCCATTGTAGGGAGAAAATTCGTGCGGCCAAAGCTCAGTTAGAGTTGAAGCTGGCCAGTACTGTGGGGGACAACAAAAAGGGCTTTTTAAAATACGTTAACAGCAAAAGGAGGACCAGAGATAACATTGGTCCGTTACTTGATGAGGATGGTCACCTCACAAATAGGGACGCAGACAAAGCAGAGACGTTTAATGCCTTCTTTGCCTCTGTCTTCAACACTGATGATGGGCTCTGGGACCCCCGGAGCCCTGAGTTGGAGGACCGTGACTGCGGTAACGATAAACTCCCAGCCAACCCCGAACTTGTGCGGGATTTGCTGCTCCANCTGGATGCATATAAGTCTATGGGGCCCGATGGGATTCATCCCAGGGTACTCAAAGAGCTGGCTGATGTCATCGCGAGACCTCTCTCAATTATTTTTCAACGGTCTTGGGAATCTGGAGAGGTCCCAGTTGACTGGAAGCTGGCAAACATTGTCCCAGTTTTCAAGAAGGGCAAGAAAGAAGACCCTGGTAATTACAGGCCTGTCAGTCTCACTTCAGTGCCTGGTAAAATTATGGAGAAGATTATTCTGGGAGTTACTGAAAAACACCTGAAAGACAATGCAGTCATTGGTCACAGCCAACACGGGTTCACGAGGGGAAAGTCCTGTTTAACNAACTTAATTTCCTTTTATGACAAGGTTACCCACCTAGTTGACCAAGGGAAGCCAGTTGATGTNATCTTTTTGGATTTCAGCAAAGCTTTCGATACTGTTTCTCACAGTATCCTTCTGGACAAAATGTCCAGCATACAGCTAGACAAAAACATAATGCGATGGGTGAACAATTGGCTGATGGGTCGGGCTCAAAGGGTTATAGTAAATGGGGTTACATCAGGCTGGCGGCCAGTCACTAGTGGGGTTCCGCAGGGCTCCATTTTAGGGCCAGTTCTCTTTAATGTTTTCATCAATGACTTGGATACAGGACTTGAAGGTATACTAAGTAAGTTTGCGGATGACACTAAACTGGGAGGAGCTGTTGACTCCCTCGAGGGTAGAGAGGCCTTGCAGAGAGATCTTGACAAATTGGAGGGCTGGGCAATCACCAACCGCATGAAGTTTAACAAGAGCAAGTGCCGGATTCTGCACCTGGGACGGGGCAACCCTGGATATATGTACAGACTGGGGGACGAGAGGCTGGAGAGCAGCCCCGCAGAAAGGGATCTGGGGGTTCTGGCTGACGGCAAGTTGAACGTGAGCCAGCAGTGTGCCCTGGCAGCCCAAAGGGCCAACCGTACCCTGGGGTGCACCAGGCCCAGCACTGCCACCGGGCGAGGGGAGGGGTTGTCCCGCTCTGCTCTGCGCTGTGCGGCCTCACCTCCAGCACTGGGTGCAGGTTTGGGCGCCACAATATAAGAAGGACATAAAACTATTAGAGAGCGTCCAAAGGAGGGCTACGAAGATGGTGAAGGGTCTGGAGGGCAAGATGTATGAGGAGCGGCTGAGGTCCCTGGGTNTGCTCAGCGCAGAGCAGAGGAGCTGAGGGGAGGCCTCATGGCGGCTGCAGCTCCTCACAGGGAGCGGAGGGGCAGCGCTGAGCTCTGCTCTGTGTGACAGCGACAGGGCCCGAGGGAACGGCATGGAGCTGTGTCAGGGGAGGGGCAGCTGGGGGTTAGGGACAGGGNCTGCACCAGAGGGCGGTGGGCATGGAACGGGCTGCCCAGGGCNGTGGGCACGGCCCCGAGTGCCGGAGTTCAAGGAGCGTTTGGACANCGCTCTCAGACACAGGGTTTGGATTTTGGGTGGTCCTGTGTGGAGCCAGGAGTTGGACTCGATGATCCTTGTGGGTCCCTTCCAACTCGGGATATTCTGTGATTCTATGATTCTATG >CR1-X1_3end#LINE/CR1 15% 70k 3%_Xc @general @gallus TCTGGACAAAATGTCCAGCATACGGCTAAACAAAAACATAATGCGATGGGTGAACAATTGGCTGACGGGTCGGGCTCAAAGAGTTATAGTAAATGGGGTTACATCAGGCTGGTGGCCAGTCACTAGTGGGGTTCTGCAGGGCTCCATTTTAGGGCCAGTTCTCTTCAGTGTTTTCATNAATGACTTGGATGCAGGACTNGAAGGTATACTAAGTAAGTTTGTGGATGACACTAAATTGGGAGGAGCTGTTGACTCCCTCGAGGGTAGAGAGGCCTTGCAGAGAGATCTTGACAAATTAGAGGGCTGGGCAATCACCAACCGCATGAAGTTTAACAAGAGCAAGTGCCGGATTCTGCACCTGGGATGGGGCAGCCCTGGATATATGTACAGACTGGGGGACGAGAGGCTGGAGAGCAGCCCCGCGGAAAGGGATCTGGGGGTTCTGGTTGACGGCAAGTTGAATNTGAGCCAGCAGTGTGCCCTGGCAGCCCAAAGGGCCAACCGTACCCTGGGGTGCACCAGGCCCAGCACTGCCACCGGGCGAGGGGAGGGGTTGTCCCGCTCTGCTCTGCGCTGTGCGGCCTCACCTCCAGCACTGGGTGCAGGTTTGGGTGCCACAATATAAGAAGGACATAAAACTATTAGAGAGCGTCCAAAGGAGGGCTACAAAGATGGTGAAGGGTCTGGAGGGCAAGGTGTGTGAGGAGCGGCTGAGGTCCCTGGGTTTGCTCAGCCCAGAGCAGAGGAGCTGAGGGGAGGCCTCATGGCGGCTGCAGCTCCTCACAGGGAGCGGAGGGGCAGCGCTGAGCTCTGCTCTCTGTGACAGCGACAGGGCCCGAGGGAACGGCATGGAGCTGTGTCAGGGGAGGGGCAGCTGGGGGTTAGGGANAGGGTCTGCACCAGAGGGCGGTGGGCATGGAACAGGCTGCCCAGGGCAGTGGGCACGGCCCCGAGCTGCCGGAGTTCAAGGAGCGTTTGGACAGCGCTCTCAGACATAGGGTTTGAATTTTGGGTGGTCCTGTGTGGAGCCAGGAGTTGGACTCGGTGATCCTTGTGGGTCCCTTCCAACTCGGGATATTCTATGATTCTATGATTCTATG >CR1-X2_3end#LINE/CR1 19% 64k 5%_Xc @general @gallus TCTGGACAAAATGTCCAGCATACAGCTAGACAAAAACATAACGCGATGGGTGAGCAATTGGCTGACGGGTCAGGCTCAAAGGGTTATAGTAAATGGGGTTACATCAGGCTGGCGGCCAGTCACTAGTGGGGTTCCCCAGGGCTCCATTTTAGGGCCAGTTCTCTTTAATGTTTTCATNAATGACTTGGATGCAGGACTTGAAGGTATNCTAAGTAAGTTTGCNGACGACACTAAATTGGGAGGAGCTGTTGACTCCCTCGAGGGTAGAGAGGCCTTGCAGAGAGATCTTGACAAATTAGAGGGCTGGGCAATCACCAACCGCATGAAGTTTAACAAGAGCAAGTGCCGGATTCTGCACCTGGGANGGGGCAACCCTGGNTATACGTACAGACTGGGGGATGAGAGGCTGGAGAGCAGCCCCGCGGAAAGGGATCTGGGGGTTCTGGTTGACAGCAAGTTGAACATGAGTCAGCAGTGTGCCCTGGCAGCCAGAAGGGCCAACCGTACCCTGGGGTGCATCAGGCCCAGCACTGCCAGCCGGGCGAGGGAAGGGATTGTCCCGCTCTGCTCTGCGCTGGTGCGGCCTCACCTCGAGCACTGTGTGCAGTTTTGGGCGCCACAATATAAGAAGGACATAAAACTATTAGAGAGCGTCCAAAGGAGGGCTACGAAGATGGTGAAGGGTCTAGAGGGCAAGACGTATGAGGAGCGGCTGAGGTCCCTTGGTTTGTTCAGCCCAGAGCAGAGGAGCTGAGGGGAGGCCTCATGGCGGCTGCAGCTCCTCACAGGGAGCGGAGGGGCAGCGCTGAGCTCTGCTCTCTGTGACAGCGACAGGACCCGAGGGAACGGCATGGAGCTGCGTCAGGGGAGGGTCAGGTGGGGGTTAGGAAAAGGTTCTTCACCAGAGGGTGGTGGGCATGGAACAGGCTCCCCAGGGCAGTGGTCACGGCCCCGAGCTGCCGGAGTTCAAGAAGCATTTGGACAACGCTCTCAGACATAGGGTTTGAATTTTGGGTGGTCCTGTGTGGAGCCAGGAGTTGGACTCGATGATCCTTGTGGGTCCCTTCCAACTCGGGATATTCTATGATTCTATGATTCTATG >CR1-Y#LINE/CR1 ORF1 incomplete (bp < 619-1458), ORF2 (1380-4427) Mixture of CR1-Y1 to 4 probably. Y1 3' end. 10.5% subst @general @gallus CTGTGCCACCATGGGCACTGATGCAGTGTGGGAGGAGTCAGGAGTGATGGCAGCCAGCNCGCCGGGCGCACAAAGGCGGCTCCAGCAGGGGGCGCAGTGACCCAGGACTGCAGTACAGAATGAGTGAACAGGGCGTGGCTTGTCAGAAGGNCGTGCTCGGCAGTTAGCGCGGGCAGTTCACGCGGGGCAGGGAGGGTGGGCAGGGCGGGCCCTCTTTTTCTCTCTCTCCTCTTCCTTTGAGAACTCTAGGGTGTTACCGCCTCTTTATACTATCATGGTGGGCACCCGTCGCAGCGGCCGGGCTGAGGCAGCGACGCAGACCGAGGGNACACAGCCTCTCTGGGCTGATGTGTGCACCCAGGTGGACAACCCANGGAGTGAGGCAGCAGTCCAAACTGTTGACTGCGGGGAGCTCCGTAATTTGGAGGTCCCCCTGGGTCCTGAGGGAGGAGAGGGCTGTCATGGCTGCAGGTGTGTCCTGCTCAAGGAGCTGCTTGAGCAGATGGCCAGGCTGCAGCGAGAAATCAGCAGCCTGAGGGGCTCCCGGGAATCTCTGAGGGAGACAGATAGGAGGTGATGTGAACCTACTCCCACTGCAGACACGCAGCCNCCTCCTAAGTCCCTGCAAGTGGAAGTAGCCAATCCAGCTGCTCACCTGCAGGACAGAGGNCTAGACAGCCCGCGAGAGGAAAGGGGCTGGACCCTCGTCTCTGCTCGAAGCAGAAGGAGCGTCTGCCCCCAGCACCCACAGTCCCACCAACCCCTGCAGTGTCCCCTGCAGTGTCCCTGAGTAATAGATTCGAGGCTCTCGGGCCGGACAGGGATGAGGGTCTGGAAAGCAGTCCAAACCCATGCCCTGAGAAGCACATTGAGAATACAGGGAGTAACAAGCACAGGGAGCGGGGCCGGTCAGGGCACTGCATCAATACCAGTGCCACCAAAAAAGGGCGGAGAGTCTTAGTAATTGGGGACTCCTTGCTGGGGGGCACTGAGGCTCCCATTTGCCGCCCGGATAATCTCTCCAGAGAGGTGTGCTGTCTTCCAGGGGCGCGTGTTAGAGACATTAGGAAGGCTCTACCACAGCTCATTAAACCGGAAGACTACTATCCTTTTATTGTCATTCAGGCTGGGTCCCGGGATGCTGCAATGAGGAAACTAAAGAATGTTAAAAAGGACTTTGCATCCCTTGGAAAGATGTTGAAGGGATCAGGGGTGCAGGTAGTGTTCTCCTCTGTCCTTCCGATGGGTAGCTGGGACCCAGGAAGANGGAGGAGAACATGTCAGGTAAATGACTGGCTGAGGGGGTGGTGTCTTGATCAAGGCTTTGGGTATTTTGATCTCGGGCAGGCCTTTGAGAAACCGGGTATGTGGGCTCCTGATGGACTCCGACTGAGCAAGTGGGGCACAAGTGTTCTGGGGAGCAAGCTCTCTGGATTGATTACCAGGGCTTTAAACTAGGTTCGAAGGGGGAAGGGAGGGGAGTTAGATGTGACAGAGAAGGGCTGAGGGATGTTGTCACTGTTGGAGATTGCAGGGAAAAACCTCTGAGTTGTCCCATAGGATCGTGCGAGGGCTCCTCAGAGAAGGTCACGTTGCCGATACCCCGTCCAAAATCTTCTTGCGTCCCTCTAGGGGTAACTGCACCTGCTGCTTCCCTAAAGTGCCTGTATACCAATGCGCGCAGCATGGGAAATAAACAGGATGAGCTGGAGATCTGTGTGCGGTCGCAGGGCCATGATCTCATTGCAGTCACGGAGACGTGGTGGGACAGCTCGCATGACTGGAATGCTGTCATGGAGGGCTATGTCCTTTTTAGGAAAGACAGGCTGGGGAAGCGAGGTGGAGGAGTTGCCCTTTATGTGAGAGAGCAACTAGAATGTATTGAGCTCCACCTGGGGGAGGGTGAAGAACGTGTGGAGAGCTTGTGGGTGAGAATTAAGGGGCGGGCTAGTATGGGTGACACCGTTGTGGGNGTGTACTACAGGCCACCNGATCAGGAGGANGAAGTCGATGAGGCCTTCTACAAGCAGCTGGAAGTAGCCTCGCAATCCCGGGCACTGGTTCTCATGGGGGACTTCAATCATCCAGATATCTGTTGGGTAAGCAACACGGCCAGGCACACGCGGTCCAGACGGTTCCTGCAATGCGTTGAAGATAATTTTCTGACGCAGGTGGTGGAGGAGCCAACGAGGCGGGGGGTGCTTCTGGACCTTGTTCTTACCAACAGGGATGGGCTTGTTAGGGATGTGAAGGCTGGGGGCAGCTTGGGATGCAGCGATCATGAGATGGTGGAGTTCAAGATCTTGNGTGGAAGAAGCAAGGCAAAAAGTAGGATTGCTACCCTGGACTTCNGGAGAGCCAACTTCGACCTCTTCNGGGACCTACTTGGAGGTATCCCATGGGCTAGAGTGTTAGAAGGTAAGGGGGCCCGTGAGAGCTGGNCAGCATTTAAACAGCACTTCTTCCAAGCTCAAGATCGGTGCATCCCTAAGAGTAGGAAATCGGGGAAGGGNGGCAGGAGACCTGCGTGGATGAGCAAGGAGCTCATGGATAAGATCAAAGGGAAGAAGAAGGTCTATGAAATGTGGAAAAAGGGCCTGTCCNCTTGGGAGGAGTATAGGAGTGTTGTCAGGGCCTGCAGGGATGCGACGAGGAAGGCTAAAGCCCACCTGGAATTGAANCTGGCAAAGGAGATAAAGGATAACAAGAAAGGTTTTTTTAAGTATGTCAACAGTAAAAGGAAGACTAGGGAAAATGTGGGTCCCCTGCTGAACGAGGGGGGTGTCCTGGTAACAGGGGATGCTGAGAAGGCGGAGATGCTGAACGCCTTCTTTGCTTCGGTCTTCACTNCAAAGACTCCCCCTCGGGANTCCCGGACCCTGGAGGTAAGAGAGAGAGTCTGGGAAATGGAGAGCTTCCCTCTGGTTGAGGAGGGGNTGGTCCGAGAGCGTCTAGGCGGGATCAATGTGCACAAATCCATGGGCCCCGATGGGATGCATCCACGTGTGCTGAGGGAGCTGGCAGAGGTGATTGCTGAACCGCTCTCTATCATCTTTGANAGGTCTTGGAGAACGGGAGAGGTGCCTGAAGACTGGAGGATAGCCAATGTCACTCCGGTCTTCAAAAAGGGCAAGAAGGAGGATCCGGGAAACTACAGGCCAGTCAGCCTCACCTCCGTCCCTGGAAAGGTGATGGAACAGCTTGTTCTGGATGCCATCTCCAAGCAATTGGAAGAGAAGAAGGTCATCAGGAGTAGTCAGCATGGATTCACCAAGGGGAAATCATGCTCGACCAACCTNGTAGCCTTCTATGATGGCATCACCAGCTGGGTAGATGGGGGGAGAGCAGTGGATGTCGTCTACCTTGACTTCAGCAAGGCTTTTGATACTGTCTCCCACGACATCCTGATAATGAAGCTGAGAAAGTGTGGGATAGATGAGTGGACGGTGAGGTGGGTTGAGAACTGGCTGACTGGCCGAGCTCAGAGGGTTGTGATCGGCGGTGCAGAGTCTGGTTGGAGACCTGTGACTAGCGGTGTTCCCCAGGGGTCGGTGCTGGGTCCGGTCTTGTTCAATATCTTCATCGACGACCTTGATGAGGGGATAGTGTCCACCCTCAGCAAGTACGCCGATGATACAAAGCTGGGAGGAGTGGCTGACACACCNGAAGGCTGTGCTGCCATTCAGCAAGACCTGGACAGACTGGAGAGCTGGGCAGCAANAAACCAGATGAGGTTTAACAAAAGCAAGTGTAGAGTCTTGCACCTGGGAAGGAATAACCGCAAGTATCAGTACAGGTTGGGGCATGACCTGCTGGAGAGGAGCTCTGCGGAGAAGGACCTGGGGGTCCTGGTGGACGACAGGTTGGCCATGAGCCAGCAGTGTGCCCTGGTGGCCAAGAAGGCCAATGGGATCCTGGGGTGCATTAAAAGGAGCGTGGCCAGCAGGTCAAGGGAGGTGATCCTCCCCCTCTACTCTGCCCTGGTCAGGCCTCACCTGGAGTACTGTATCCAGTTCTGGGCTCCCCGGTACAAAAAAGACAGGGATCTCCTGGAGAGAGTCCAGCGGAGGGCCACAAAGATGATAAAGGGCCTGGAGCATCTCCCCTATGAGGAAAGGCTGAGCGACCTGGGTCTGTTCAGCCTTGAGAAAAGAAGACTCAGAGGGGATCTTATTAATGTTTATAAATATCTTAAGTGTGGGAGTCAAAGGGACATGGCCAACCTCTTTTCAGCGGTCTGTGGGGACAGGACAAGGGGAAACGGCCATAAACTGGAGCATAGGAAGTTCCGCACCAATATGCGAAGGAACTTCTTCACAGTGAGGGTGACGGAGCACTGGAACAGGCTGCCCAGGGAGGTTGTGGATTCTCCTTCTCTGGAGATATTCAAGACCCGCCTGGACGCCTACCTGTGCAGCCTGCTGTAGGGGGCCTGCTTTGCAGGGGGGTTGGACTCGATGATCTCTGGAGGTCCCTTCCAGCCCCTACAATTCTGTGATTCTGTGATTCTGTG >CR1-Y2_3end#LINE/CR1 12% 36k 7%_Y1 @general @gallus AGCCTTCTATGATGTCATCACTGGCTGGGTGGATGGGGGGAGAGCAGTGGATGTAGTCTACCTTGATTTCAGCAAGGCATTTGATACTGTCTCCCACAACATCCTTATAACGAAGCTGAGGAAGTGTGGAATAGATGAGTGGACGGTGAGGTGGGTTGAGAACTGGCTGACTGGCAGAGCTCAGAGGGTTGTGATCGGCGGCGCAGAGTCCAGTTGGAGGCCTGTATCTAGCGGTGTTCCTCAGGGGTCGGTGCTGGGTCCGGTCTTGTTCAACATCTTCATCAATGACCTTGATGAGGGGATAGTGTCCACCCTCAGCAAGTTTGCTGATGATACGAAGCTGGGAGGAATGGCTGACACACCAGAAGGCTGTGCTGCCATTCAGCGAGACCTGGACAGGCTGGAGAGTTGGGCAGAGAGGAACCAGATGAGGTTTAACAAGAGCAAGTGTAGAGTCTTGCACCTAGGGAGGAATAACCGCATGCACCAGTACAGGTTGGGGGATGACCTGCTGGAGAGGAGCTCTGCAGAGAGGGACCTGGGGGTCCTGGTGGACAACAGGTTGGCCATGAGCCAGCAGTGTGCCCTGGTGGCCAAGAAGGCCAATGGCATCCTGGGGTGCATTAAAAAGAGCGTGGCCAGCAGGTCAAGGGAGGTGATCCTCCCCCTCTACTCTGCCCTGGTGAGGCCTCACCTGGAGTACTGTGTCCAGTTCTGGGCTCCCCGGTACAAAAAAGACAGGGATCTCCTGGAAAGAGTCCAGCGGAGGGCCACAAAGATGATAAAGGGCCTGGAGCACCTCTCTTATGAGGAAAGGCTGAGCGACCTGGGTCTGTTCAGCCTTGAGAAAAGAAGACTGAGAGGGGATCTGATCAATGTCTATAAATATCTAAGGTGCGGGAGGCAAAGGGACGAGGCCAGACTCTTTTCAGCGGTGCGTGGCGATAGGACAAGGGGAAACGGCCACAAACTGAAGCATAGGAAGTTCCGCACAAATGTGCGTAAGAACTTCTTCACAGTAAGGGTGACGGAGCACTGGAACAGGCTGCCCAGAGAGGTTGTGGAGTCTCCTTCTCTGGAGACGTTCAAGACCCGCCTGGACGCCTACCTGTGCAACCTGGTCTAGGGAGCCTGCTTTGGCAGGGGGGTTGGACTNGATGATCTCTAGAGGTCCCTTCCAGCCCCTACAATTCTGTGATTCTGTGATTCTGTG >CR1-Y3_3end#LINE/CR1 12% 117k 6%_Y4 @general @gallus AGCCTTCTATGATGTCATCACTGGCTGGGTAGATGGGGGGAGAGCAGTGGATGTTGTGTACCTTGACTTCAGCAAGGCGTTTGACACCGTCTCCCACAACATCCTTGTTATGAAACTTAGAAAGTGTGGGATAGATGAGTGGACGGTGAGGTGGATTGAGAACTGGCTGACTGGCAGAGCTCAGAGGGTTGTCATCAGCGGCGCAGAGTCTGGTTGGAGGCCTGTAACTAGCGGTGTTCCCCAGGGGTCGGTGCTGGGTCCGGTCTTGTTCAACATCTTCATCAGCGACCTGGATGAAGGGATAGAGTCCACCCTCAGCAAGTTTGCTGATGATACAAAGCTGGGAGGAGTGGCTGACACACCGGAAGGCTGTGCTACCATTCAACAAGACCTGGACAGACTGGAGAGTTGGGCAGGGAGGAACCTGATGAGGTTTAACAAGAGCAAGTGTAGAGTCTTGCACCTGGGGAGGAATAACCGCATGCATCAGTACAGGTTAGGGGATGACCTGCTGGAGAGGAGCTCTGCGGAGAAGGACCTGGGGGTCCTGGTGGACAACAGGTTGGCCATGAGCCAGCAGTGTGCCCTTGTGGCCAAGAAGGCCAATGGTATCCTGGGGTGCATTAAAAAGAGCGTGGCCAGCAGGTCGAGGGAGGTGATCCTCCCCCTCTACTCTGCCCTGGTGAGGCCACATTTAGANTACTGTGTCCAGTTCTGGGCTCCCCAGTTCAAAAAAGACAGGGATCTCCTAGAAGGAGTCCAGCGGAGGGCCACAAAGATGATAAAGGGCCTGGAGCATCTCCCGTATGAGGAAAGGCTGAGTAACCTGGGTCTGTTCAGCCTGGGGAAAAGAAGACTGAGAGGGGATCTGATAAATGTTTATAAATATCTAAAGGGAGGTGGGAGGCAAATGGATGAGGCCAGGCTCTTCTCGGTGGTGTGTAGCGATAGGACAAGGAGTAATGGCCTAAAACTTGAACATAGGAAGTTCCGTACTAACATGCGGAAGAACTTCTTTACGGTAAGGGTGACGGAGCACTGGAACAGGTTGCCCAGAGAGGTTGTGGAGTCTCCTTCTATGGAGATATTCAAGACCCGTCTGGACGCCTACCTGTGCGACCTATTGTAGGGTACCTGCTTTAGCAGGGGGGTTGGACTCGATGATCTCTTGAGGTCCCTTCCAACCCCTGCGATTCTGTGATTCTGTGATTCTGTG >CR1-Y4_3end#LINE/CR1 17% 28k 6%_Y3 30%_B @general @gallus AGCCTTCTATGATGTCATCACTGGCTGGGTAGATGGGGGGAGAGCAGTGGATGTTGTGTACCTTGACTTCAGCAAGGCNTTTGACACTGTCTCCCACAACATCCTTGTAATGAAGCTTAGGAAGTGTGGGATAGATGAGTGGACAGTGAGGTGGATTGAGAACTGGCTGACTGGCAGAGCTCAGAGGGTTGTGATCAGTGGCGCAGAGTCTAGTTGGAGGCCTGTAACTAGCGGTGTTCCCCAGGGGTCGGTGCTGGGTCCGGTCTTGTTCAACATCTTCATCAGTGACCTGGATGAAGGGATAGAGTCCACCCTCAGCAAGTTTGCTGATGATACAAAGCTGGGAGGAGTGGCTGACACACCAGAAGGCTGTGCTGCCATTCAGCAAGACCTGGACAGACTGGAGAGTTGGGCAGAGAGGAACCTGATGAGGTTCAACAAGAGCAAGTGTAGAGTCCTGCACCTGGGGAGGAATAACCGCATGCATCAGTACAGGTTAGGGGCTGACCTGCTGGAGAGGAGCTCTGCAGAGAAGGACCTGGGTGTCCTGGTGGACAACAGGTTGGCCATGAGCCAGCAGTGTGCCCTTGTGGCCAAGAAGGCCAATGGTATCCTGGGGTGCATTAAAAAGAGCGTGGCCAGCAGGTCGAGGGAGGTGATCCTCCCCCTCTACTCTGCCCTGGTGAGGCCACATCTGGAGTACTGTGTCCAGTTCTGGGCTCCCCAGTTCAAGAAAGACAGGGANCTCCTAGAGAGAGTCCAGCGGAGGGCCACAAAGATGATGAGGGGCCTGGAGCATCTCCTNTATGAGGAAAGGCTGAGAGACCTGGGACTGTTCAGCCTGGAGAAGAGAAGACTGAGAGGGGATCTCATCAATGCTTATAAATATCTAAAGGGATGGGAGTCAAGTGGATGGGGCCAGGCTCTTTTCAGTGGTGCGCAGCGACAGGACAAGGGGCAATGGGCANAAACTGGAACACAGGAAGTTCCATACGAACATGAGGAAGAACTTCTTTACTGTGAGGGTGACGGAGCACTGGAACAGGCTGCCCAGAGAGGTTGTGGAGTCTCCTTCTCTGGAGATATTCAAGACCCGCCTGGACGCCTTCCTGTGCGACCTGCTGTAGGGAACCTGCTTTAGCAGGGGGGTTGGACTCGATGATCTCTAGAGGTCCCTTCCAACCCCTGCAATTCTGTGATTCTGTGATTCTGTG >GGLTR7-int#LTR/ERV1 GG000030, GG000178, GG000004, GG000087, GG000931, GG000523 No complete ORFs reconstructed (strong matches to pl-pro between bp 2053-5034, to env between 5772-6122). Either a currently active subfamily exists with ORFs, or an element has been exapted a while ago, as pos 5036-6349 correspond to a protein called FET-1 (Reed,K.J. and Sinclair,A.H. FET-1: a novel W-linked, female specific gene up-regulated in the embryonic chicken ovary Gene Expr. Patterns 2 (1-2), 83-86 (2002). GGLTR7B internal sequences have different 3' region. 6-7% subst, but much of this due to subfamilies (LTRs 3-4% div). @erv @gallus ATTTGGCACCCCAGATGGGACCCACTCTGTTCGGCTGCAGGACCGGCTGAGAGAGGGGACACCTTTGGCGCGCCCCAAGATTTCTTGGAAGGACTCCCTTCCTCACCCGATCACTGCGGGGACAGACAAGGACCATCCATAGGCGGACCAGGTATGTGTATGGAAAAGGGGGAACCCGTAAGGCGTGAGGAGACGTCCTACGCAGGGTATGAAGGAGCGTGCCTGCTCCCCCCCCCCGAGGTACGTGAGCTCACGGGTTAGGTTGCCGGCTGGGGTAGGAAGACTCCTTGGGGAGTTCCTACAAAGGGGACCTGTAAGTCGTACGCGAGGAAAGAGCAACAGCTCTCCCTTAGGTGATTGGTAACAGCGGGGATTTTGTCAAATGATAGCGTGGATTCTCCTGGAGATAGTAGTGGGAGTTATAGGTTGTATTATTGTTATCACCATCTGCTGAGTGTTCGGTACCGTGTATCTAATCATTTCAGGTCAAGCTGACTTTCGGAAAAATCTTAAAGCTTGCAGCTGATCGACTAATGTACTAGTGTTATTAAGATTCCAGCTAAAGGACATCGTCAGCACTGTGTATTATGTATAAACCATGGTTTTTGTTCTAAATGTCAGAGTGAGTGTGGTGTGAGTGAGACGCGTTCCATTCAGGGAGTGAGTGTCAGTCCATTTATGTAGTACTGTGTTCCGATTGTGGGGAAGAGTGTAAAGGAAGGTGGACAGGCTTCTGTGAGATCTGTTTCCAAGTGTTTATAACTGAACAATATCACTATACGGTGTTAAGGGCTGTTTGTGGAAACTTTGAGGAAATTAGGAATCAATAAGAATTGTGTAAACATCATGGGAGGCTCCCAGGGGAAGGAAATTCCCAAACAAACCCCTTTGGGATGTGCATTGGCACATTGGTGGGATATTGCAGGGGAACCTGGAGGCACCCTGAGTAAGAAAACTTTAATCAAGTATTGCAATCAATGGTGGTTAATATATAAGTTAGAAGATGATGAGAAGCGGCATCGGAATGGGACCCTAAACTACAATGCCTTCTTACAGTTACTGTTATTCTTAAGGAGAGAAGGTAAATGAAGTAACATGAACAGTTTTTAGAATTGAGTGCTCTAATCACGAGACTAAGTACTGAGTGTTTGTGGAAACTGAAGAACTGTATTGTTTAATTTGTGGGTTCTGAAGGGAATGGGACAAACAGTTTTGATGGTATAAGTCAGTGTAATTGTTAATGGTATACAGAAGCTTGATTGAGGGTATGTGGAAATGTAACTGAGGGTATGAAGTGGACAAAGGAAAAAGGGTTAAAGATGAAGTGAGTTTATCTGCACTGGCATGAGAGCAGCCCCCCCGCACCACTCCCCTGCGAGCAGAACTCTCGGAGTGAGAGTGCCGGAGTCAGAGACTGCTGTTGCAAACAGCATTACTTGCGAATGGGGGGAGATGGAGAGGATGGGGTACTGGCAGTGAGAATAGCCTTCATGTGCAGAGATCTAGGAAACCCAAAGTTCCAGTGTTAGCACTGGAAATCTCTGGAGAGGAGGAGGTGAAACTGAAATGTAATGTTAGTACTAGTACTTTATGTAATGATGAGAGTTTGGAAAGTGAAAAGTTTGAGAAGGACGCAGGCTGAGGAAGGCAAAGATGAGCAAGGTGTAACAGGGATGTCAGAACCAAAGAGGGTGAGCAATATGAAGAAAAAAAATAATTGAGAAACAGAGATAGTAAGGAAATTGGAAATAGCAACAGCTGTTACTGTTGCGGTGCTAGAGTAGAGTTGTAAGACCCAGAGGTCCCCTTAGAAAGAGGTAAAGGGAGGGGCCTGGAAGAACCCACGGAGGGTTCCACCCCTGCNGGACTGNAAGCAGTGTGCAAACTGCGGGGAAATGAGACATTGGGTGGAGAAATCCAACCGTCTCTGATTGCAAAAGCTGAATGATGGGAACCTGGGAAGTTNNCCCTAGCAAATCCACTGGTTAAATTGCAGCTAGGAGAGCAGGATAAAGAGGTTTATTTTCTGGTGGGTACGGGTGCCTCTTACCACCCATAGATGATTTTGCAGCAGTAGTAGGAGCTACTGCCCAACAAGAAAGAGCTTACCTTTTGGNATCAACTAAATATGGGCTGNGAAAACAAGTAGGAATACATACATTTTTGTACATGCCAGGTTCTCCAAAACTGTTACTCGGGCAAGACTTATTAAGACAAATGGATGCAGAGATTAAATTCAATAAAATTGGAGCTAAGGGTCAAACAATATTAACTGACTGAAAATTATAAGTCTGGCTTTAGCACAAACTGGGAAAAACAATGTTGTACCCCCAGAAGTTACAGAAATCTTCAATAAGGTATGCTTAGGAGTGTGGGTATCTGGGATACCTGGTAGAGTCAAAATGCAGCCCAAAGTTAAAAGCAAGAGCTAGCCCAGTCAGGGTAAAGTAGTGCCCTTTGAGGATATGGAACTGTAGGATAGAAGGATAAAAGAAATAATAGATAACTTTTGGGATTTTGGATTACTAATTGAATATGAATCCAAATACAGTACTCCAATCTTGCCAGTGAAAAATTGGATAGCAAGTGCTATAGTTTGGTACAAGATTTGAGGGCAAGTAATAGAACTGTTAAATGCATACACTCAGTGGTGGCAAATCCATACACTTTATTAACCAAGTTAGGGAATGAGTAGGTGGAGTTTACCTTCTGGATTTGAAGGATGCCTTTTCTGCCTGGTTTGGCCAAAAGAAACTTGTTATTTGCCTTTAAATAGGAAACCCCTAATATGGGAAGAAAAACACTCAGTTAACCTGGACAGTGTTAGCCCAGGGCTGTGAGAATGGCCCAANGGTTTTNGAGAACTGGTCAACTCGGGAGCCTGAGATTTGGGTTCCTCCATCCCACGGTGGAACTTGACTGCAGCATGTGGATGCCACAGAAACAAAGAGGGCTGTGTGCAATGGACTGCGAATGTGCTGAATTTCTTGGTTTCAGTGATGATCGACTTTCTCAACAGAAGGCACCAAGAACTCAACGGCAAGGGACCTATCTGGGATAGGAGGCTACAGCTGGACTTGGAACCTCAAGGACTGCCAGGAAAGAAGCCATCTGCCAAAGCCCTGAGCCACAAAGTGCCGAGGAACTCCGTACATTCTCAGGAATGACAGCAGGGTGCCAACCGTGGATACACGGCTACGGACTGGTGGTAAAGCCCCTTCAGGAAGTGAGAGAAGAGTGGTTGAGGGCGGTGGCTGCACCAGTGCTCAAGATTCAAGAACCTGGGACATCTACGCTAGGCCAAAGAATAACAGTTGGAATATCTCATACAGTGTCTATACTGTTTTGGAGGTAAAAGGGGGGCATGGGCTCTCACCCCCAGGGGTTCCTGAAATACCAGGCCATCCTGGTACAGCAGGATGATGCAGAAATAACTGCAACTAATATTGTCAACCCAGCATCTCTCCTTAGCGGAACTCCCGGAGAACCAGTATTTCATGACTGCTTTGAAACAACTGNGGCTACGGACTGTTGCCAGTCGGACCTGAAAGACGAATCCTTAGAAGATGCAGAAGACACCTGGCTTACTGATGGAAGCAGTTTNGTGAGACAAGGAAACCGTAAGGCAGGATATGCAGNAACTGCTACTGACAAGGTNACCGAAGCACAACCATTACCTGGGGGGACTTTCTCTCGGAAGGCTGAAATAACTGCCTTGACAAGAGCCTGAAATATACGGACAGATGCTAATTATGTATTTGGGATGCTACACGCTCATAGCACCATCTGAAAAGAGCAAGGATTGCTCACACACAAGGAAAAACAGCATGATGTAAATCTACCAAAGAGCGTGGCTATTATACATTGTAAAGGACATCAGAAAGGGAACACTGTACAGGAAACTGGAGATAAGATGGTGGATCAGGTGGCAGAACAGGTAGTTGAAGAGGGCTTTAATTCCAGACCGTAAACTTAAAATTTCTGAACCTGAGTCAAAACCTGTAAAATATTTTAAAGAGGATAGCAATCTAATTAATGATTTAGAAGGGAAGAGAGCAGGCTGACAGATGGACACGTTGTTTTGCCCTTTGGTATTCTATGGAAATTGGTTCTAAGGGAGGATAAGAAAATGTATTGGGCAAACGGACATTACAAAGTACGATCCTAGTACCAGGAAAGGGGTNCAAGTGGGCCTATTGGGAAAGGGAACCTTCCAGGGCAACAGTGACAAATTGATTTCTTGAAACTCCCAAGAAAAGGGGGGTATCGCTGTATGTTGGTACTAACTGATACCTTTTTGGGATGGCCAGAGGTATTTCCCTGTAGGACTNATAAGGCTCGGGAAGTAACGAAAATGCTGTTACATGCTGTTAATTCCAAGGTTCGGGGTTCCTGTAGCAATCTCATCAGATCGAGGCCCACATTTTTGCCAAGGTGGTCCAAACAAATAAGCACATTATTGGGAATTGATTGGCAATTGCACACACCTTATAGACCGCAGTCAAGCGGACAGGTGGAAAAAACGAATCACCTGATCAAATTACAGATAGTAAAACTTGGCCAAGAGGCTGGGATTCCCTGGCCGCAGGCACTGCCTTTGGCACTTCTGAGAATTCGGACTAAACCCCGAACCAAGGAAGGATTAAGCCCACATGAGATTCTTTATGGGCGACCTTATACTGTACAAAAGGAAATCTCTATGCAGGTGGGGGATAAGGTGTTGAGTGAATATATGGTCAGCTTGGCGAAGCAATTAAAGAAAATTGAACAAGCAGTATTCGGTGCCAGGGCACGAGGCCTAGATGGTCCAGTGCATGATGTATTGCCAGGCGACTATGTTTATGTTAAACCTCTCTCTCAGATTCACCTCTGGAACCAAAGTGGGAAGGACCCTACCAANTTCTCCTGACCACCCACACCACNGCCAAGGTAGAGGGACTTACACCGTGGATACGTCATACCCGCCTGAAGAAAGCACCAGGACCACAGCGGACAGCAGAAGAGAGAGGACCACTGAAAATCAGGATCCGAAAGCATGTATAAGANTTTGATAATAGTCAGTATGATTGGAGCAGTAGTCACAGCTTGGCAAGAGAATAGCTACTTNAGAATAACTGAGAAAATTGGCCAGGCTCTCAACAAATCTTGTTGGATATGCACTGCCCTCCCTAGAGGGGAGGGAAAAGTGCCCGTTTATGGGATAGTGGCACTAAATTGGACCATTCCAGATTGGGTAGAGCACGGAAAGTGTAAGTTTGGGATAGAAGACAAGCCACAAAAGGGACCTAAGTTTGATTTACTAGTTATTAACTCTACTAGATCTATCTTTGCAGACAGAAAAACTGACGGTAAAGGTGGGGTGGGGGTTGGCTGACGGAACTTGACAGGCATAGGGTGTAGTTGGGAATACAGAAACTCTGGGGCAGTATCAGGGATCAGTGAAGCTGGAAGGTGGAACCAAGGTGNGGGGTGTGATCCTAGAATCGATAAGGAGTCACACTGGCTCTCAGATAAGAACGTACTCGGAATTGTAGGGATGGGAGCATCGTTCACTCNTCAGGAAAAGATGGCCAGGCCATGTCAGTTACCTCATGGATACTGGTGGTTATGTGGGGACGCTCAGGCACGGAAAGCATTACCTTTAAATTGGACAGGGACTTGCACTACAGGATACTTAATAGCCCAGACCACGGTGCATGAGGAGATCCCTCGGGGACTCCTGAGGACCCCTNGGATTCGAACTAAGCGTACATACAACCCCCTAGCTATATATAACAAGGGATACCACNGCTTTCTGAGAGCCCTTATCCCGGCTCTAGGAGTTGCCCAGCTAGAAAAAGCTATAGTAAATATCTCTGCAACTCTGGAAATCGTAGAGAATGCCACAACAGATGCATTACGAGCAATCCAAGAAGAGGTATCCTCTTTATCCAAAGTAGTACTCCAGAATAGGATGGCACTAGACCTATTAACAGCCAAGGAAGGAGGGGTATGCACAATAATAAATCAGAGTCGCTGTGCTTACATCAATAAGGATTTAAGAATCGAGAGAGATTTAAGGAAAATTTGGGAACAGACGAAAGTCCTGCATAGGACAAGTCAGGATGACACCAGCTGGGAAGGAGATTTANGGAACTTGCTTACTAGCTGGCTACCGAATCTAGGATGGTTAAAGCAGCTCTTCCTAGTTTGCATCATCTTGGTACTGTTGGTAGGTTTTACCTGTGTGATGATAAAGTGCTCTGCCTGCCTGTGCCGAAATACNAGAAAGGAATATGAGATATGGAAGAAACACGAGCTAAGGCAGAAGGTGGAAAGTGGGAGCTATTTTGGGACATNTAGAACAGAATGGGATNATCTAGCAGGTAGAGGTCCTGCTAGACTTATAGAAAAGGGGGGAAT >GGLTR7A#LTR/ERV1 GG000005 4% subst @cut @general @gallus TGAAGAGTGAGAACAGGACCCTGCAGTTATAGAGAGAAGGGCCTCACAGCAAGAAAAGGGAAAGTAGCTTCACAAAGTAGAAATAAGGGGCAAATAGAGATAGTTTAGGTAGAGAGTGTTAGAAAACAAGGGATTCCAAGCACTTTCACAGACACTAGGTCTGGAATAACAAGGAGGATGAAGGCCATAAAGATAAGGACTGGAGAGCAGCTCGAAAACATTTGGCAGGGAGGTGATTAGATGTCTACAGGGCAAGCTGAAACCGGTTCGGGGGATGCCCCCCCTTCGGGGTCAGAAGTTTGCAGCGAGGAAGACTACGAGCCTTCGCGAGGAAGACTACGAGCCTTCATCATCACGACCTACTACGCACGCGCAAGGGGGGGAGGGACTGCATGCTAATGGGCTCTCGGGAATGTAATGAATATGTATCCGAATTCCTGTCAACTATTGATTATGTATTAGTTCGACCTATATCTATAGCACGATTTCTCCTGACGGTGTGCAAGTTAGGTGGAGCGATCCCCCTTGCACCAGGGTGTACGCGCGTCACCAATAAACACATGCCTGCTCTATATCCTTACTGGCTATAGGGTCTGATTTCCGCACGTCA >GGLTR7B#LTR/ERV1 GG000033 4% subst ca 80% similar to GGLTR7B @cut @general @gallus TGAAGAGTAAGAAAGGGTTCAGTAAAAAAGGGGTCTGCAGAAACTAAGGGTAAAAGGATTAGAAATAGCTTACAGAAGCAAATATGCAGAGGCCGCTAGAAGAATGGGATAGTAACAAGATGGGATTAGGACAATGCGGGGGTAGAAGAGATAAAGATGAGGGTGTGAAAACAGCTCAAGGACACCAGGCAAGGAGGTGATAAGGTGTCCCCAGAGTAAGTTAGAACTGGTTCGGGGGCTACCCCTCCCTCAGGGTCAGAAGTTTACAGCGAGGAAGACTACGAGCCTTCGCGAGGAAGACTACGGGCCTTCATCCAACGACCACCAGGAGGAGACCCCCACTGCTCATGACGCATGCGCGAGGGGGAGGGACCGTATGCTAAGGAGTTCTCGGAAATGTAATGAATATGTATACGAATTCCGGGAAAATCATTGATTATGTATTAGCTCTGCCTATATCTATACCAAGTTTTTGTCCTGATGGCATGCAAGTTAGGAGGAGCTATCCCCCTTGCATCCGGCTCTGCGCAGCGTTGATTAAAACATACCTGATTTTATAACTACTTTGTGGTTATAGAGTTTGATTCCGCAAGTCA >GGLTR11-int#LTR/ERV1 GG000673, GG000475-7, GG000364, GG000095 part 8-10% subst Contains damaged, partial coding regions (bp 1452-2804; closest to the human HERVP71A pol polypeptide)) and a partial ENS coding region (see ENS element in database; 53% dentical product (68% similarity)) @erv @gallus GTTTGGTGCCGAAACCCGGGAACAACGTCGCCTGCGGTGAGCCTCCGCCTCTACAGCACAGGACGGTGCACCCCGCTCNTNTTTCTGCAGCCCTGTGGGTTGGCGGTGGTGGTTCATCGTGGAGCCGGCTGCGGACCCGAGGATGTTTTTAAGAGGCAAGATCTGTGAACAGCTGGGGGATAGGGACGGACAGCGGGCACTGCGGTGTTGTGTGATTGACCTGATAATTCCTGGCAACTCTGTGCACAGACCAAGGTAAGAACAATCATGTGTGATTAAGTACTGCCTTGGAGGTCGAGGTCTGGGACTCTTATGCTGTACGCGAACGTCTTGCAAAAAGGGTTGCTTGACGGTACACCTCATTTTCTAGAACCGAGAATTGGTGTGCGCGACGCTGCAGAAGAGCAGTTCCTGCAGTAGCACGACCATAGGTTGCTGAGAGAAATGGGGAATAAGAGTTCCAAGGTGGGGGACAGAGAGAGGGCCCCCGGGGCAGTGCCTGCTATAAGTCCTTTAGGAAGTATGATGAAAAATTGGAAGAGAAATTCGAGAACCAGGGATAAGGATAAACAGAAAATGATTAGATATTGTGTTGTTGTATGGCCTGAATAACCAATTGCAGGGGAATCAGTATTTTGGCCAAAATACGCGTCTGACGAGGATCGCATTTGTCAGGCTTCAAACGTGCACGTAAACAGTAAAACTCCTTTATTTATTATTTTNTTGTTTTGTTTTGGAGGAGGAGTCCGCATATGCTGCTTGTTGGATTCAGGGAGTACAGCAGTTAATCATGGCTAGACAAAATTCTGTAGATAAGGAAGAACAGAGAAACCCCAGATGGGATCCTTTAAGCTGTTTACTCCCTGTACCTTTCCCTAGGATTAAACTCACTCGCTTTCCTCTATGGAATGGCGTTCCCCCCCCTTACCATCCTGGCCTCGAGTCAAGTCCTGTAACTACAGGAGGGAGGCTGGAGACAGCTGACAGAGTGGAGGGTATTGGCTCGGATCAGCCCCTTAACAGCCCACCTGAACCGAGCTCTGTGACTAGTGCTGATGCTGAAAAGAAAAAGTTCTGCCAGCTTGAGAAAGAATTGGAACAATGCAAAAGGGATATTATAAATTCTCCCTTTCCTAAATCTAACNCCATTAACCCCACTAACACTTCCATGTATCCTCTTAGGGAAGTTCCAATGTTATCAGGAGATATAGGATATGTAAACTCCCCACTTACTAGTGGAGAGGTGAGAAATTTTAAAAGGGAAATGAAATCNTTAATGAAAGATCCTATTGGATTAGCAGAACAGTTTGATCAATTCTTGGTCATCTTTAGCTTATAAAATACTGGGACTTAATTTAACTGGGAACACCTTAAGAATAACAGGGGTAGAGGGATCAGGAATGATAGTTTCACTTTTTGAGACTACTGAATTAAAATGGGAAGATAAAATAGTCACAGGGCAATTGTTATATGTGCCAGAAGCAGGGACCAATTCACTGGGGAGAGATTTAATAGTTAAATTAGGATTGCAGTTGAAAACTTGTGAAACAGGTATAAAGGTGTCAATGAATTTGTTAACAGCTGATGATGAAAAAGAAATAAATCCAAAGGTGTGGGCAGGGGAAGGAAACCGGGGTGGACTCACAATTACTCCCTTAAAAATAACTGTCCAAGGAGGGAGTGAAGCTGTGAAACAGCGACAATATCCCATACCTTTAGAAAGGATAATGGGTCTAAAGCCTGTAATACAAACATTGGTTAAGGATGGTCTTCTGGAACTCTGTATGTCACCCTATAACACTCCAATTTTGCCAGTACAGAAGGCAGATGGCACCTATNGGCTGGTGCAAGATCTAAGAAAAATTAATGAAATAGTTCTCAAGCGACACCCCCTGGTTCCTAACCCCTATACTTTAATGAGTCNGATCCCACANGAACATAAATGGTTTAGTGTAATAGACTTAAAAGATGCTTTCTGGACCTGCCCTTTGGACTCAGAGAGTCGAGATCTTTTTGCCTTTGAATGGGAGGACCCAGAAACGGGACGAAAGTAGCAATATAGGTGGATTGTTTTACCCCAAGGGTTCACGGAATCACCTAATTTATTTGGACAAGTGCTGGAGAAAGTTTTGGAAAAGTTTCAGGTTGAAGAGGGGGTAAAGCTGTTACAGTATGTGGATGATTTGCTGATTTGTGGAACAGAGGAGTCTAAAGTAAAAGAGACTACAAGTAAACTCCTGAATTTCTTGGGGAACACGGGCTAAGGGTGTCTAAAAATAAACTGCAGTATGTGGAAAAAGAAGTCAGATACCTTGGGCATGTGATTTCTGAGGGGAAACGGAGAATAAATTCTGAAAGAATTCAGGGNATTGTGCAGCTTCCTCTGCCCGGGACAAAGAGGGAGTTGCGAAAGTTTCTAGGTTTAATTGGATACTGTAGATTATGAATAGAAGCATATGCACAAAAAAAAAAAAAAGAGATTGTATCTCAAACTATCAGAGGGAGAACCCAACATATTAAAATGGACAAAAGAGGAAAAAGAATTAGTAGAAGTATTGAAACGGGACTTAATCACAGCACCTGTGTTAGAACTGCCTGCCTTAAAGAAACCATTTCACCTTTTTGTAACTGTCAGTGAAGGAGCTGCTTTAGGAGTTCTAACACAAGAATGGGGAGACAAAAGAAAACCTACTGCATACTTGTCTAAGCTATTAGACCCTGTATCTCGAGGNTGGCCCGAATGTGTCCAGGTGGTAGTAGCAACTGCCTTATTGGTAGAAGAGAGTACGTGTGTACCCTTCGGGGGTGTAAGGAGCAAATTGTTGAGTTGTTGATAATACGTTTCCCCCCCGCGAAGAGATTGCTCCACATTTTGAGGCATGATCGTTAACAAAAAAAAAAAAAAAAAAAGGAACGAGGGCAGGAATCCGCTCCTCGACCTCTTAGAAAAACACGGTGCCAAACCCTCCCCCGTGGAGATGGAGTGGGCACAGAATAATTGGTCCAACTTAGAGGGAGTCGCGGATCATATAAATTCCCTCCACAAGCAAACTCGTATGGGGGAGGGAAAGGGAAAATCAATCATTTGTGCAGTTCTAGGAGCTGCTCTTACTGCTGCCGTAGAGATCCGCAACGAACAGCACACGGCAGAAACCCAAATTATTCAGTCCTTGCAGGAATTGGTCACATACCTGCAGGACCAAGTAGAAGATCTTAGGGGACAGTCAGAAAAAGAAAAACATTCAAAAGTCCTCCTTCAGCAAGCCCTTAGAGAACAGTTGGTAAATGAGAGGGAGATTAATGCTAGTTCCCCAGGTAGTGACTTTTATCCAGGAGAAAGTCTGGAGGATGTGAGAGCCCAAAAAGACAAATCAGAAAACCTGGTGACCCTTCTCTGCCCTCCGATAGAAACTGGGCATGCATATGAAGAGAGCGAAGGTGGGTACTCTGATGTTAGTATCAAGGAGGTCCCCTATTCTGCTACCGAGCTGGCCAAATTAAAGAAAGATTTTGGTCACACCCCTAGGAAATCAGAGACAGAGTATGTGTGGAAAGTGCCACTAACAGGGGGAGANCAGATCCTGTTGATTGAAAAGGAATCAGAGGGTTACTGGGGACCTGGAATATTTTTCACCACTGGCAACCACTGTGCCCCGTGGTCCCTTACTCAAAGAGCTGCTTATTGGGATGATTACTCCCCGGGACAACTGATGTTGATTGATTTGCCCCACATTGGTCCTGTCCCTTTAACCCTCAAAGAGCCTCTTAACAAATACATCTGGAAGGCTCAAGACGATCAGGGGAAAATGTACAAAATTAACCATCTGGATTTCACCTACCTTCTAACTTTGGTTCATTTGGGACCAGGAAAGTTTTTTTTGTTTTGTTTTGTTTTCTTTTCCAGTTATGCTTTCTCTAACCTTGGTTCCTCTGGAACCGGGAAGTTCTCTCTCTTTTGTTTTCCAGATGCTAACGAATGCTGATCCTGTTGCTGTGCCTCACATGTTCCCTTCTCACCCTGCTCCTTTCCCTGGGATCCCTGTGGTATCATTAATGTCACTGTTTCGGACAGGCATCTTCTTCAGATTAATATTTGCAATTGCTTATGCTGACCCTATCACATTCACTGGCTGGTCACGGTCCCATGCCCATATTGGGCATACTGGGCGTATGGGACCGAATTCTAATTCTAACAGAGGCTTAACCCTTTCAACCACGGTTAAGCACAGTAATGAAATATATTCAGGAAATGAATGGGGCCAGGATAGTACTGGCCGACTCCCCCAACTCCNGGGAGATGCAGGACGAAGAATAAAAGTAGGGTGTCGGATGCAACAAGTGATCTATGTGCATTGCAACACCCCTGCAGTCTTCCCTATCAGCACTGGGAACCAACCAGCGGTTCTTATCTAATGTATTATCTCAATGGGAAAGAACTAATATAAAAGACCACCAGTTAATTGTAGATGCACTTGCCATAACTCAAAATAATGTCTCCCTAGCTCTTAGTTGTAGAAGGTAAAGGAAACGCTTTACCCACTGAAATTCGAAAGGTGATTTGGGACAATGCAAACAAATTTGAAAGAGAATTTCAATCTTAGTGGCATCTAGTTAATTTTACTTATGATCCTGTTAATAACTNTGCTACAGCTTTTGTCCTAACAATACGCAATGCTTCGGTATATACCATATACCCAATCATTGCGCTGGGACTGAATCACAATGGGGTTATACTCTACCCATTAGAANACAGAGTATGGGCCCAACAAAATGGAAACAAATGGCAAACTGTTGATGTTAGTTCATGTGCTGTATGGGAACAACAAGGATTTATTTTTGTGAGAGTAATACCATCAAGGCTCAAGACATTTGTCTTGACACTGAGCAAAGTATTTGCCGTTTTNAGAGGTATCCCAATGAGACCCCTGAAATAGTGCTCATCTATATTGGAAAAGGATGTGTGTGTATGAGAACCTCTTGTAACTTTATACTCATAGGTAATATTACTGTAGATACAAGCAATCATTCAAATGTCTGTGTTTGTAACTTTACTAACATTATGGGATGTGACTTTAATTATTCAGTTCCAGTTACGTCATATCAGTTGTTGTGGTCCAATTACACATTAATCCAAGATTTGCCACCTGCCCCAATTGGAATGAATCTTGCTTTAGTAAAGAAATTACTGCAACATGACGATCTGTACCAACTGCTAGAACGCATCCGAGATAACGGACAAAAAAACCTCTAATTACTGTTCACCATGATACAAAAGAGATGCACCATGTCCTGGAAAGGGTGAAGAAGGATGGAGAACACCACTGGTGGGAAACGCTCCTTGGATGGTCACCAACAGCAAGAGGAGTTTTTAATTCTGTGCTTCACCCAGTTGTGATCTTATTAATCCTAACATTGATGTGTTTATTGCTTGTAATCATATTATATGTGAAAGTCTGGCAGATGCTGAGGTGACTGGCCCGGCTCGAATTACCCAAGGAGTCTGAAAGTTGGCCTAGGTATTAGATTACTTTTCCTAGCCTCCTGGTGATCCATGGGTAAGGCGAGTTCTGTTATGCGCATTGGCGGCACTCACGTTTTGCTCCTTTGCTTTTATGTGATTTTAACATGTATCTTTCCCTTCTCCCCTCATTCCCCTCAATGCTTTTTTTTCTTAAAACCACCATGGGACAGTGATAACAAGCTTTGCACCGCCGGGTGGTGTGAGAAGCAGNAACAATGCTTGGCTCAAAGCTTGTTCAGCGGCACCCATCCGAGGCATGAGAAGCTGGAGAATGCTTGGCTCAAAGCCTGTTCAACGGCACCCATCCAAGGCATGACCTGCCCAACAAGTTTTTGAAGTTAATGGTTGACTACCATGAGCACAGTGGTAAGAGGACAGACGTGCTGTTCCTCCTGATGAACAAAAATGTGGGTACCCCGACAGCTACCATCACCGTGATGGACAGGACATGATGCCCCTGATAATTGGGGTAGTCGGGCCCGAAGAGTTCTGAGGAAGAACGGGTACCCCATCTGCCAAAATGCAGCCATGTAAGTCAACGAGACGTCGCTGACCAACCTGCTGCCTCCCCATGGACCAACGAGACATCGCCGGATTCCCTGGTGGTGACTATCCCTGCTCTGTAAACCGTTTGCTAGAATTTCTTTCTTTACTATCGCTAACTTCCCCATCTTCCCCACATCCCTTAGTAGCTTAGAACCTGTAATGCTGATTATGCTCTGATTCAAGACTTACTACCTGTTCATACTGGGATGAATCATACAAGGGTGAAGAAATTGTTATTCTTAATCAATATATATATATTAGAGTATGGAGAATAGCAAGATGATAAATTATTATTATCAATCATCAAGTCGGGTTAGTAAGGTAGTTTTCTTATATTAGAAGTGTTTCATAGTCTGGTGCAAAAACACAAAAAGGGTAAAAAGAAAAAGAGGGGGAATTGTGAGAGGTAGATTG >GGLTR11#LTR/ERV1 GG000095, partial. 8-10% subst @cut @general @gallus TGTGAGAGGTAGATTGTGTTTTTGCAGTGGAAATTTCCAGTATTTCTGTATGTAGCATAGGATAAGTTGCCTTTCACAAAGAAAGCTCCTGAACAGAGTAAAGTTGAGACTGGGGCGTTCCGACCTAGGTAGAATTGGCACAGGCACTAGGTAAGGTAATTATATAGGGTAGGGGAGAGTCCGGTACAGGACAGAACGAGTGTGCTAATTGTTGAAAATATTGTCCTCCTATCGCCGTAAAAAGTACAGAACATACCCAAAGACAATGGGTTGGTAACAGACATTGTATGGAAGTGTAACGTAGCAACAGCGTCGGAAGACTGTGAGCCTGAGACGCTCAACCAGTGAGTGCCAGGAGAGGCTTTACCTGCGTCGGACCCAGGGTATATAACGGAATGGATTTCACTGACTAGTTGCGCAATTTCTCCCTTGTCAGTAGGGGGTGTGCGCCCATTATTGCAATAATGAATAAACTGCTCTTCACAGAGATCTTTGCCTGATTAGAAATTTTTGATCTTGAGCGTGTTTCTCACA >EAVHP_I#LTR/ERVK flanked by GGLTR10A elements @erv @gallus TGGTGACCCCGACGTGATCTGTCTGCTGAGGGTAGCTGCCCGGCATGCCCGTGACGTGGAGAAGAGCCTGTGAGGTGGCGGCAGGTCGCGCACGGAAGACGTATTGCGGTTAAGAGCCTGCGAGGTGGCGGCAGGTCGCATACGTAACAATGGACCAAGTCATTAAGGTACTTGTGCAGTTTTGTAAGGACTACTGTGGAAAATCTACTCCTTCCCGGAAGGAGATCGCGACAGTTTTGTCGCTGTTAAATGAGCTGGGGGAGCTGGACTCTCCCCGCCACGTTTTGGATTCGAGTAGGTGGGACTTGCTCACCTTGGCGCTATGCCAGCGCGCCATGGCCAGTCAGAAGGCTACGGAACTTAAAACGTGGGGACTGATGTTAGGAGCCCTTAAGGCGGCCAGGGCAGAGCACAAACTTGGCGCGGTCATGAGCGGGGAGGGAGCTCCGGGGAGCGGATCTCTGGAGTTTTGCAGGACCGGCGCTCAGACCGGCGCTCAGACGACAGCGAATAAAACGGCGACGGAGAGAGAGGAAGATTGCGAGAAGGACAACGAAGAGTCGCAGAGGCTCGGGGGGGGTGCAACGACGCCGACGGCCCCTCCTAATTCTATTGCGCTGTCGCCGCCCCCGCCCTACCCTAAGCAGCCGTTATATCCTTCCTTGGCAACGACATCGGAGCAGGGGGCGGGACCATCCCCAAAAGGGAAGGGGGAGGGGAGACTTAAGCTTACTGATTGGGGGCAGATCAAAGAGGAAGTGGCACAGAAAGGCCTGGCGGCAACTTATACACTCCCAGTTGTTGTCTCGGAGGAGGGAGGCCCAATCTGGGTCCCGTTGGACCCAAAGGGGGTAGCAAGGATGATTGAGGCAGTAGAAAAGAAAGGGCTGAAGTCGCCATTGACGATGAATGCCCTTGAGGCCCTCACAGCATCGGGCCCAATGCTGCCTTATGATATTGAAAATTTAATGCGCATGGTGTTGAAACCAGTGCAGTATACGCTCTGGAGAGAGGAGTGGCATACCAAATTAAAACAAATGCTGATTACGGCGCAGGGTGATCAAAGAAACCCCATATATGGGTCTGATATACAGAGATTAACGGGCAATGCACCAGGTCTGCTGACCCCTCAAGCACAAGTTTGTCAACTTAGACCAGGAGAGTTGATAGCGACTACGGACGCTGCAATAGACGCGTTCCGAAAGCTTGCAAGGAGCGCTGAGCCCACTACTCCGTGGACAGAGATCGCGCAAGGCCCCACAGAGCCGTTTCAGGAGTTTGCAGACAGACTAATTAAGGCAGTGGAAGGCTCGGATCTGCCCAGAGCAGTTCACGGTCCCGTCATCCTGGATTGCTTGTATCAGAAGTCCAGTGAAGGGGTGCAGGGGATTTTGCGAGCGGCGCCGGGGAGGCTCCAAACCCCTGGTGAGGCCATCAAGTATGTCCTAGATAAGCAAAAGGCCTGTCCGTCTGTGGCAGGGGAGGTAGCTGCGGCGGTAGCAGGAGTGATGATGGCCTGTAGGGAGGCGGACCATCGTAGTGCGGACCGACAGTTAGGACCTTGCTTTAAATGTGGCCAGTTGGGCCATATTAGGGCCCAATGCAGAATGGGCACGGGTGGAGGTGTAACATGTCAGCAGTGTGGGCGGAAGGGTCATGCAGCACCGCAATGCAGGGCCCGTAGGCCTCCAAGCCAGGGAAATAACAACGGGAGACAGTCCGAGCACGGTGACATCATTTTTCGACCTATGCAGGCCCCTGACCTAAGTTTACCCATGGCGGCGCTGTCTCTAAGTACCCATGAGCGCCCTCTGGTGAAAGCCACTATTTCTTGCACCAACCTCCCGCCGGATTTTCAAGGCCCTCTATCTATCTTTGTCACTGCCCTCATAGATTCCGGCGCCGACGTTACTGTGGTCACGGAAACAGAATGGCCATCCTCGTGGCCCGCGGAGGCCTCGCAGTCTATTATGGGGGTTGGAGGGGCGACCCCCTCACGCCGGTCTACCAATGAGGTACAAGCGGTTGTGATTAACAGGGATGGCTCCTTAGAGAAACCGGCGTTGCTTACGCCATTGGTGGCGCGTGTCCCCGGAACTCTTCTGGGGCGGGATTTCTTGCGACAGATAGGCATTCCACAGTATCCTCTGAACACCTTCAAGGGATACGTCACTAATGTTACTGCTTGCGATAACGATGCCGATTTAGCCAGCCAAACAGCATGCTTGATAAAGGCTCTAAATACAACCCTCCCTTGGGACCCCCAAGAATTGGATATTTTAGGGTCCCAGATGATCAAGAACGGAACAACACGTACGTGTGTTACCTTTGGTTCAGTGTGCTATAAAGAGAACAATCGCAGTATAGTCTGTCACAATTTTGATGGGAATTTTAATGGGACTGGTGGGGCGGAAGCAGAATTGCGTGACTTCATAGCAAAATGGAAAAGTGATGACCTTCTTATAAGGCCCTATGTCAACCAATCATGGACGATGGTAAGTCCAATAAACGTAGAGAGTTTTTCAATAAGTCGTAGATATTGTGGATTCACCAGTAACGAGACTCGTTACTATAGAGGGGACCTTTCTAATTGGTGTGGTTCAAAAAGGGGAAAATGGTCAGCGGGGTACAGCAACGGGACAAAATGTTCCAGCAACACGACGGGTTGCGGTGGTAATTGCACAACGGAATGGAATTATTATGCATATGGGTTTACCTTCGGGAAACAGCCAGAGGTGTTGTGGAACAATGGGACTGCTAAGGCACTCCCACCAGGTATTTTCTTGATTTGTGGGGACAGGGCTTGGCAAGGCATCCCGCGTAATGCCTTGGGAGGGCCCTGTTATCTAGGACAATTGACTATGCTCTCTCCTAACTTTACCACCTGGATAGCGTATGGGCCGAACATTACGGGTCACCGCCGTAGCAGGCGCTCGCTGAGTCGTCTCTCGCCTGACTGCGGTGATGAGCTACAGCTATGGAGTGTGACAGCCCGGATATTTGCTTCTTTCTTTGCTCCTGGTATAGCAGCAGCACAGGCCTTAAAGGAGATCGAACGATTGGCATGTTGGTCGGTTAAGCAAGCGAATTTAACATCATTAATATTGAATGCGATGCTGGAGGACACGAGCAGCATCCGGCACGCAGTGTTGCAGAATCGAGCAGCCATCGATTTCTTACTCCTGGCGCAGGGACACGGGTGTCAAGACGTGGAAGGGATGTGTTGCTTCAATCTCAGCGATCACAGTGAGTCCATTCACAAGGCGCTCCAAGCCATGAAGGAACATACAGAGAAGATACGGGTGGAAGATGATCCCATAGGGGACTGGTTTACGCGCACGTTTGGTGATCTAGGAAGGTGGCTCGCGAAAGGTGTTAAGACGCTACTGTTTGCCTTGCTTGTCATAGCCTGTCTATTAGCTATCATTCCATGTTTAATCAAGTGCTTTCAGGATTGTCTATTGAGAACAATGAATCAGTTTATGGATGAACGCATAAAATATCATAGAATTAGGGAGCAGCTGTAGGTTCCGAACGCGATGTGACGGGAGCTATCGGCATAGGGAGGGGGA >GGERVK1#LTR/ERVK GG000290, GG000778, GG000829, GG000550, GG000264 (with GGLTR1 LTRs) ORFs 248-2116, 2445-5039, 5124-6803 with best matches to EAVHP and HERVK. The region from 5260-6440 is only present in a subset of the elements (and subfamilies with different deletions exist) @erv @gallus AGTGGTGACCCCGACGTGATGCTTAGGGGAATGAGTCGGCTGTCTGCTTGACGGGGCAGGAGCCCACCGCGGAGCGTTAGCACTTGCTGGGCGGTGGAAGCCGGGGGACGAGCCCGGGGACAGAGGGAATCTGCAGTCACCCCTCTGTCGGCGGAGGTCGCGGACGAGCGACGGATATACCCTCCGGAATCACGCCGGAGAAGAGCCTGGGATCCTGGTCTCAATCGGGAGGAGGATCGGGGGCGTCATGGAAGCCGTCATAAAGGTGATCGTTCACGCGTGTAAGATTTATAACGGGAAGCATGCTCCTTCTCAGAAGGAGATAGCTGCGGTCCTCTCGTTGCTTGAGAGGGAGGGGCTGTTAACATCGCCCCACGAGATTTATGACCACAGTAATTGGGATTCAATTACCGCTGCCTTATCCCAACGAGCAATGGTCACTCAAAAAGCAGCGGAATTTAAAACTTGGGGTTTGATTCTGGGAGGATTGAAGGCTGCGCGCGAGGAGAAACTTGCGGGCGAACGAGCCAGGGAGCTATTGGGGTTAGAGGTTGCGGGGCCGGGAGTGGGTCTCATTCCTCGTGCAGGTCCGGCTGGAGATAAGGTGGCGCCAGCCCCTACAACCCATCCTGCCGCGATAGCTCCGGGAACAAAGAAGGACGAAGTTGCATCGAATTGCTCAAGCGTGGAGGCCACAACACCCCCACCTCCGTATCCCTCTCAAGGCTTATATCCTTCACTGAAGTCAGTCGGGGAGGGGGGGGGAAGGTCCTTAGAGGAATGTGGTAACATCTCCTGCAGGGCTGATAAGCAGGCTTCGGGGGAGGGTACGGCATTCCGAGGAGGTACAGCNCAACCCGTGTGTTGTGATAACGAGTGCAGCTCAGTCTGTTGCTGTAGCAACTTCCCCAACGGGGCGGACTGCACCGTCCCGCCCCGCGGTGGATGCAGGGGCGGAGCCCCGTGGCCAACGTCCCAGGGGTCCACCCCTGAGGGGTGCGGCCCCACAGCACCCGCCCCGTGGGCTCCGCCCACGCTCACTGATTGGGCCCGGGTGAGGGAGGACTTACGAGCAGCCGACCCAGCACGGCCGCCGCTAGCCCTTCCGGTCATAGTCAAGACAGAGGGCCCGGCGTGGGTCCCTCTAGATTCTAAAGCAATAACCCGCCTTTCTGAAATTGTTAAAACAAAGGGGCTGCGTTCCCCAGTAACAATGGCGGCGGTAGAGGCCCTCATGGCCTCTAGCCTACTACCGTACGATGTGATCAGCCTCATGCATGTGATCCTTGAACCGGTTCAGTACACCCTGTGGTATGATGCTTGGAATACACAATTGCAAGCAGTGGTGGCGGCAGCCACCCGAGATGCCCGACACCCAGCCAATGGTCGGGGCCGAGGGGATAGGACCACATTAGCGCGTCTCCAGGGTGTAGCGGACGGCATGGTGGGATCTCCGGAAGGCCAGCTTAGGCTGTTGAGACCGGGAGAGTTAGCTGCAGTCACAACTGCGGCCCTACAGGCCCTTCGGGAGCTGGCTCGAGTTACAGAGCCTACTCTCCCGTGGGCGGATATCAAACAAGGCCCTTCAGAGCCTTTTGCNGAATTTGCGAACCGCTTGATTCGTGCAGTTGAGGGGTCCGATCTTCCGGAGCCGGCCCAAGGTCCTGTTATCATTGATTGCCTTAAGCAAAAATCGCTCCCGGACATACAGCAAATTATTAGGGCGGCCCCAGGCAACTTAACAACCCCTGGGGAACTTATCAAATATGTGCTTGACCATCAGCGCGCTACTCCGTTAACAAATGAGGGCTTAGCCGCAGCCCTCCAGCTCGCAGTACAGGCAGCTACACGCCCCAAGGACGGGGGAGGGAAAGGTGTCTGTTNTAAGTGCGGACAACCCGGACACTTTAGGACCAACTGTCCGAATAAAGGTGGCTCAAAAACAGACACAGACAAAAAATGCCAGTGGTGTGGTGGGGCGGGCCACACGGCGCGTAACTGCAGGAAGATCAAGGAAGCGATGCAGGGAAACGGCCAAGGGAGGGCGCCTCGGGCCCAGGGCACCTTCCCAAATCAGAGCAATGGGCCAAGGAGAACATGCCCACCGTGGCATTAGCCATGGGATTGGGGGACCGTCCACTAGTTAAGGTGATAATGTCATATGCGGGTCCGCGGCCCCAAAAAGAGGGACCTCGAACCACGCTTTTTACGGCTTTGCTAGATTCTGGTGCGGACGTTACAGTGATTGCGGAGGCCGATTGGCCGCCGAACTGGCCACTCACCTCGCATTGGCAGCATATTGGGGGAGTGGGAGGCACAGTCCCAACAAAAGGGGCTGCAGAGGAAGTGGAGATCGCTATCATTGATAGGAGCGGGACGATGGAGGCACCGGTGTTGATGCAACCCCTCGTGGCACCGGTGGAAGGATCAATCTTAGGGCGTGATTTTCTCACGTCCTTGGGAGTTCGACTCACAAATTTATACTAAGGGCCACTGTGTACCACCTTGCGCTGCATTTTGCCATCCCATTACGCTGGAAACGGGAAGCGTCTCCCGTTTGGGTGGATCAGTGGCCCCTTCCTACTGATAAATTAGCAGCGCTGACGCAGCTGGTCTCCAGGGAACTGGAGGCGGGACACATTGAACCGTCACTTAGTAGGTGGAACACGCCCATCTTTGTTATCCGGAAACCATCGGGGTCCTTCCGTTTATTGCATGATCTTCGGGCTGTTAATGCACAGCTCGTCCAGTTCGGTCCCGTTCAGCAAGGCGGTCCATCACTTGCAGCCGTTCCCAGGGGATGGCCCCTTGTGGTCATTGACCTTAAGGATTGTTTTTTCTCCATCCCTTTGGCAGAACAGGACCGGGAGGCTTTTGCATTCACAGTCCCTGTACGGAATAACCAGGGCCCAGCTCAAAGGTTTCAATGGAAGGTTCTCCCTCAGGGAATGGCCTGTTCACCTACTATTTGTCAGCTTGTGGTGAATACAATTATCGCGCCAGTGAGACGCGACATGCCAGACTGCCAGATTGTCCATTACATGGATGATCTTCTGCTTGCAGCTCCGACAGGTTCCCAACTACAAGCCCTAGAAGCACGGGTGTCAGGCGCGCTCACGGGTGCAGGTTTCACGATCTCCCAAGAAAAGGTACAACGAGGGCCGGGGATAGAATTCCTAGGATATAAGTTTGGATCATCCACAGTTATCCCCGAGGGCCTGGAGATTAAGCCTCACGTAACCAACNTGTGGGATGTTCAGAAATTGGTAGGAGCTATCCAGTGGGTCCGGGGAGCGCTGGGTATTCCACCACGATTAATGAAGCCCTTTTATGACCAGCTGAAGGGCTCAGACCCACGGGAAAGGAGAGAGTGGACCCCAGAGATGGACGCTGCCTGGCGAGAAATACTATCACTGTGCTCAACAGCAAGTTTGTCCAGGTGGACACCGGGTATCCCCCTAGAGGGCGCTGTTACTCGCTGCCAGGATGGGGCCGTAGCTGTCATTGGTCATGCACTGGGCTCCTGTCCACAACCTCTGCGCTGGCTGTTCTCAGCACAGCCGGTGCGGGCATTTACCCCGTGGGTGGAGCTTCTCTCCCTGCTACTTAGTAAGGCAAGGACANCTGCATTTAGGGATTTTGGAAAGGATTTGGATATAGTCCACCTGCCCAGGTTCTTCCGAGATTCGCAGATCTTGCCTGACGAAATCCTCCTGGCCCTGCATGGGTTCGGAGGCAAGCTTAGGTATGCGGGTTCCCTTCCGATTTTCGAGCTGGCACGCCCGCTCCGGGTGTCACTCCGTCTTCGGGTTGTTGCTTCTCCCCTTGATGGTCCGACAGTATTTACGGATGCCTCTTCATCGACAGGTCAGGGGGCGGTTGTCTGGAAGAACCAGACGGGTGACTGGGAAATTAGAACATTTCAAGATCACGGTGTCAGTGTTCAGACGCTTGAGGCGCAGGCGGTAGCGATGGCACTGCTCCTCTGGCCAGACACCCCTTGCAATGTAGTCACTGACTCTGCTTTCATTGCAAAAATGTTACTACGAATGGGGCAGGAAGGACAACCCAGTACTTCGATTGCCTTCCTCTTGGAGGAAGCATTGACGGCAAGGACAGCGCCCGCTGCTGTTCTTCATGTGCGAAGTCATTCAGACGTTCCGGGATTCTTTACAACTGGCAATGCCCTCGCTGACCAACACGCGGGGCACAAGGTTCTTACGGTGAGGGAGGCTAGAGACCTGCATTCTACGCTACACCTAGGGGCTCGAGCACTGTCAAGGACATGTTCNATTCCTATGGCGGTGGCCCGGGAGGTGGTGCAGGCATGCCCTCACTGTAATTCAGCCCCTGCGCTTAGTGCGGGAGTGAACCCTAGGGGAATTGCACCTCTCGACGTCTGGCAGACGGACTTCACGCTGGAGCCTCGTCTGGCGCCGAGGTCTTGGCTTGCGGTTACTGTTGATACCGCGTCCACTGTCATTGTTGCTACCCAACATGGCCGCGCGAATTCTTCTGCAGCACAACATCACTGGTCGGTGTGCGTCGCGACATTAGGCCTACCGAGTCACATTAAGACAGACAATGGCTCCTGCTTCATCTCGCGCTCCACCAAGGAGTGGCTAGCGCGTTGGGGCATCACGCATAGTACNGGTATCCCTGGCAACTCGCAGGGCCAGGCTATTGTTGAAAGAGCGAATCGGCTCCTCAAGGAAAAGTTGCGTGTCCTTGGGGAGGGGGAAAATTACAGGGGAAAGATTCCAGTGAGCCAACAGGGAGAGTTGCTGGCTCGTGCGTTGTATGCATTAAACCATTTTGAACGGGGGGAGAATCACCGCACCCCTATGCAAAAGCACTGGCAACCGAGGATTATTGAAGAAGGACCACCGGTGAAGATTAAGATCGACAATGGGTTATGGGAATCAGGGTGGTCTATTTTAGTTTGGGGCAGAGGCTACGCGGCGGTCAAAAACAAAGAGTCGGGAAACATTATATGGGTTCCATCGAGGAAAGTTAAGCCAGAGTTTGGCCTCAAGTAACGAGAACTGAGCGTTTCTGTTGCAGGCGTGGCTACTGGGGAAGCCGAAGACCCCGACACCGGAGAAGCGGAAAAAAACACTTATATGGGTGCGTGGACCACCGAAGACAAGCCAGGACACGGACCCGGCAACACAGCCGTTACTGCCCACACCGAGAAATTTGGTTCTACCTCTGCTAATGTGTCTGTGTCTATGTTCTTTGCCAGGGGGTGGCGCGGCTATTTGTTGCAGCAGCCGGGGAATGTTTGGGTTACATGGGCGAACCAAACAGAGCGGTTAGCTTGCTGCCTTAGCTTACAGTCAGCTACCTCGCCCTTTCGGACATGCTTGATAGGGGTTCCCTTCTGGGTGGGGAACAGTGATCCACCTGAGTTCCTAGGATACCTGCGGGCGTATAACATCTCCAACCGCTCCGACCCATGCCATATTTACTGCGGGAGCCCTCAGCTTAATGACACTGACCTGGCAAATGAAACGNTTGACANTGTAGGGAAGAAAGTAGCTTGTGTCATCTGCAGGTTGAATGTCTCCCTCCCTTGGGAACCCCAGGAGCTACAGTTGTTGGGGTCGCAGGGAGTGCCTAATGACACTTGGGTGAATACAACTTGGTTATCTCCTGGCTGTATAGGATTTGCAAGGGTCCCAAACCAGAACTACAGCCTTCTTGATTCCATCTCCCGAAAGGGCCCGTACTGGAATAGCCGTATTAATCGCTCTGATCCATTTACTGATGTGTTTCCGAGGGATAGGGCCCACTATTACTGGGGAAAAGAGTATTGCGGTTACACAGCAAACAAAACCACATTCATGCTATCTAACAACAGCTGCACGGGTATCTGGATTTCGGTAAACACAACTGTCACCATAGCACGGCCCGACGGCTTTCTTAGGAATTTGACCTGCAGCAGTTATAATGTTGGCGACAGTAATACCAGTGGTTGTTGTGTTGGGCCAGCTCTCAGAGGTCAGGGCGAAGAAAGGAACATCTGGAATAATGACACAGCTAAAGCGCTGCCGTCAGGTATTTTCCTTATTTGCGGAGATCGCGCCTGGCAGGGAATTCCAGTTAAACCGGTGGGGGGTCCATGTTACTTGGGACATTTAACTGTCCTTTCCCCAAAGGTTTCAGAATGGCTTCAGATAATGAATCGTACTCGAATGCGAACTAAACGAGACTTGCAGCAGTTATCGCCTAATTGTAGTGATGAAGTTCGTCTTTGGGGAATGACTGCGAGAGTTTTTGCATCACTATTCCCGCCCGTAGGTGCAGCACAAGCGCTGAAGGAAACAGAGCGGTTAGCTTGCTGGTCGGTCAAACAGGCCAACGCTACTACCCTTGTGCTGAATGAAATGCTTGAGGATATGAATAGTATCCGACATGCGTTGCTGCAAAACCGGGCGGCTATTGACTTCTTGCTTTTAGCTCAAAGCCACGGATGTGAGGATGTCGAAGGGTTCTGTTGCTTCAACTTAAGTGATCACAGCGCATCGATCCATAAACAACTACAGTGGATGCAAGGCCACACACAGAAGATCAAGGTGCAGGCCGATCCCTTCGGTGAATGGTTGGAGGGTCTGTTTGGGGAATTAGAGCCGTGGCTAAAACAAATGCTTAAAACGCTTATCGTAGGTTTAGCAATATTCTTGGCTATTATGCTCTGTCTTCCATGCTTTGTTCAGCTTCTTAGGGCATGCTTAAGAAACTTCATAGAGGAAATCTCACGTCAGCAGTACGCGTATCAGCGCATTCAGGAGCAATTATAGACGCACTTAGGAATAGAAATAGAGTTAGGATTTGCGTTCGCGTTGTAACGGGTCAGCTTTCTGTGGCATGGGGAGGGGGAGA >GGERVK10#LTR/ERVK GG000660 There are many subfamilies. Some wit large extra pieces, partially represented in GGLTR10-int ORFs 206-2212, 2424-5135, 5144-6799 @erv @gallus AATGGTGCCCCGTGTGAGGCACGGGTGAGAGGCCTGTGTGAGGCACAGACTGTGTTCTGATGCTCTCTGCGCTGCTGCGAGCTGTGGGGTGACGCCATAGCACGAGATTTGGGGTGACGCCCAGCCCGAGTGCCCTGAAGAGAGGGGTAGCCTGCAGAAGACGATTGGGGTGACGCCCTGCAGAAGATCATGGCGACGACGATAGTGCTGGCCGGCAAGTGGAACCTGCGTTGCGGTGGGGTCCGGGGGGGACGACAGGACGCCCGCGGAGGACCCGTGTNGACGGCGGTGTCGANTGCGAATCCGNGGTGACGGCGACGGGCTGACTATGGAACATGTTCTTAAGGTACTGCTTCAGTTTTGTAAAGACTACTGCGGGAAGAATGCTCCTTCTAAGAAGGATATCCACGCAGTTATTTCCCGGTTAGAGCGGGAGGGGGAGATTAAAGCCCCCCAGGAGATCTTTGATCACCGGAGATGGGATGATCTCACCTCCGCACTCGCGCAACATATTATGAGCGCTCAGAAGGGTGGGTCGGAGCTAAAAACTTGGGGACTGATACTAGGGGCGCTGAAAGCTGCNAGGGAGGAGGGAAAGGTATNGGAGGANGCCCGGCGGCTCTGGGGTCTTGACCAGGCGGACCCCGGAGGGGGTTCGCAGGGGGTCAGCTCGGACGCGAAACGCGGGTGCCGGCCGGGAGTTAGCCTCTCTTGCAGGAATCCAGACGAGGAGCGATCGACAAAGATGGCGCCGGGTGATCCGANCACACCCGNACAAACGNCGGGGGACAAACAACAAGATGGCGGGCTCCAGCCGTCGGCACCCTTATCGGGTGAAGACACCTTATCGCAAGAACTGGAATCCCCGCCTCCGTATCCCCGGCAGCCGCTGTATCCTTCATTGCAAAACTTCACCCCGCCCATAGGGGCGGAGAAAGGGGTGGAGGAAAAAGGGGGCGGTACACCTGCTCCCTCNCAGGGGGCGGAGAGTAGGGATTACACCCCCCCGGAGGGGGCGGGGGGTAGGCGCGGTACTGACTGGCAGGGGATTAAGGANGCGGCAGAGGAAAAGGGCTTAGTCACCGCGTTCCCCGTAGTGATTGGGGAGGAGGGGCCGGAGTGGACTCCGTTAGACCCGAAAGGAGTCACACGCTTAATAGAGGCGGTAGAGAAGAAAGGATTGAGATCACCCCTGACTNTGAATGCGTTAGAAGCTCTNACAGAACCAGGCCCTATGCTCCCCTACGACATAGAGAACCTTATGCGTATGGTACTCAAGCCCGTACAGTACACACTCTGGAAAGAGGAATGGCTAACTGAGCTTAAACGGGTGGTAGCAGCCGCACAAGACGATCCAGGGCACCCTGTGCATGGCACAGATATGCTGAGGCTTACGGGATCTGCAGCGGGAATGGCCACCCCCCGTGCTCAACTNGCCCAGCTGCGCCCAGGGGAATTGTTAGCGACTACTGATGCGGCTATGGGAGCTTTCAGGAAGTTCGCCCGTAGCGCAGAGCCTTCCACTCCTTGGTCGGAGATAGCCCAGGGTCCAACCGAATCTTTTCAAGAGTTTGCTGATAGGCTAATTAAGGCGGTTGAGGGGTCGGACTTACCCAGAGCTGTCCATGGCCCTGTAATCGTGGACTGCCTCAAACAAAGGTCTCTTGAGGATGTCAAAACCCTGCTTCGTGCAGCTCCCGGGAAAATCTCCACACCGGGGGAGGTTATTAGGTATGTGTTGGATAAACAGAAANCTACCCCGCTGACTAATGAGGGCCTGGCGGCCGCTATCACTAACGCGATGGCTGTGGCNTCGAGGCCACCGCGAGCCGCAGAACCCTCCAGAGGCCCTTGCTTTCGGTGTGGCCAATTCGGCCACACTAAAGCCCAGTGCANTGCCCCAGTGGACGANGAGAGGGGTGGCCCTTGCTTCCGGTGTGGCCAGTTCGGCCACATTAAAGCCCAGTGCAGAGCCGCGAGGTACGGGGAGAGGGGTAGAGTTACATGCCAACTGTGCGGCAAGGGAGGGCATAATGCCCGGCAGTGTAGAAGCGTTAGAGTTCAGCCGCAGGGAAACGATTGGGGGAGGGTGCCTCAGGCCCAGGGCCCCTCCCGCAGCCCGCGGGATGGGCCGTCGATGATACCTATGCCCAGCCCGCCAGTCATGCNGGCTCCCANCTTGAAGTTCATGACACGCCCACCGTGGCATTAGCTTTAGACTGCCAAAACCGCCCGTTTGTTAAGGCGTTCATGTCGTATGTTGGCCTGCCGCCTGACTTTTCGGGTCGTCGNTCTGTCCCGGTCACAGCGCTTATTGACTCGGGGGCGGATGTCACGGTGATATCTGATGAGGACTGGCCTAAGGAGTGGCCTGTGGGGACCTCTCAGGTGATCAGAGGGGTGGGNGGGACCATATCTACTAGACGATCCTCGGCAGAGGTAGAGATTGTCGTAGTCAACAGGGACGGTTCGTTGGAGAGACCTGCCTTGCTTGTCCCGCTTATTGCCAGAGTACCAGGCNCACTACTGGGACGGGACTTCCTAAACAGTGTGGGTGCACGCATTACAAATTTNTAGTAAGGGCCACTGTCTGCCAGCTGTCCACTGCATACGCGATTCCATTGCGGTGGAAACGGGACGCGCGCCCCGTTTGGGTGGATCAGTGGCCTCTTCCCCTCGAGAAACTTAAAGCACTCAGGCANTTAATCTCACAGGAATTTCAATTGGGACATATCGAACCCTCTCTTAGTCAGTGGAACACCCCGATCTTTGTCATACAGAAGCGCTCCGGCGCCTTCCGCCTGCTGCACGACTTGCGCGCGGTCAATGCCCAGCTTGTACCTTTTGGGGCAGTGCAGCAGGGTGGACCGGTACTGTCAGCCATACCCAAGGAGTGGCCGTTGGTGGTCATAGATCTTAAAGACTGCTTTTTCTCCATCCCTCTCGCGGAAGAGGATCGGGAGGCATTCGCCTTTACGGTACCGACGCTCAATAACTTAGGCCCCGCTGAAAGATTTCAGTGGCGTGTCCTCCCGCAAGGAATGGCGTGCTCCCCTACTATTTGTCAGCTAGTGGTAGGTAGAGTATTGGAGCCAGTCAGGAGAGACTTCCCTCGATACATACTCGCGCATTATATGGATGATCTTTTGCTTGCCGCCCCTACTGAGTTAGGGTTACAAACGCTTGAGTCGCGGGTGATGTCTACTCTAACTGCCGCTGGGTTCACTATTTCAGAGCAAAAGATACAGAGAGGNCCGGGAGTCGAGTACCTGGGGTATAAGTTTGGCCCCGAGACGGTCCAGCCAGCGGGTCTTGCCATTCAACCGCGCGTTAAAACGCTGTGGGATGTGCAGAAACTGGTAGGAGCCCTCCAGTGGGTTCGGGGTGCATTGGGGATACCCCCTCGATTGATGAAGCCCTTTTATGATCAGCTGAAGGGGTCTGATCCGAAGGAACCCCGAGACCTGACTCATGAAATGGCCACGGCCTGGCAAGAGATCTTACAAAGCTGTATGGAACAGTCGCTCGCGCGATGGGATCCCACCGAGGCCCTTGAAGCAGCTGTTTGCAGGTGTGAGGCAGGAGCTGCCGCTGTTCTGGGCCACTCTCTCGACGCCAAACCGCAACCATTGTGGTGGCTGTTCTCAGTACAACCCACGCGCGCCTATNCCTCCTGGCTCGAGATATTGGCGATGTTACTCAGGAAAACCCGATTGCTCTCGGTGCGGGCTCTAGGGAGAGAACCTGACGTGATACACTTACAGAGTTCATTCCGTGATGTACAGCCGCTCCCTGAGACCCTNCTCACAGTGCTAAGAGATTTTGGAGGACTGATAAGGTACTCAGACTCCCTNCCCATTTTTGACGTGGCTAAGCCGCTTGCTGTCTCCTTGCGGGTGCGGGTTCAAACCTCTCCGCTTGAAGGGCCCACGTTATTCACAGACGCATCCTCGAGGACCGGTCAGGGGGCGGTGGTTTGGCAAGATTCAAGCAATAGTTGGCAGACTGCTATTTTCGCAGACCGAACAGTCAGCGTGCAGATGCTCGAGGTGACGGCCGTAGCCGTTGCGGTGCGCCTTTGGCGTGAGATACCTTGTAACATCGTTACGGACTCTGCTTTTGCNGCCAAACTACTAGCCCGGATGGGTCAGGAAGGCCTCCCGAGCACAGAAGCTGCTGGCATNCTGGAGGAGGCTTTAGCCTCTCGTACGGCCCCTGTTGCTATTTTGCATGTGCGCAGTCACTCTGAGGTGCCAGGCTTTTTTACAACAGGTAACGCGGTGGCAGACAAAGCCGCCAGTACGCAGGTTTTTACAGTCCAGGAAGCCCGTGATCTCCACTCTACTCTTCATATAGGGGCCCGNGCGCTCTCTAGGGCTTGTTCCATCCCACTATCTGTTGCGCGCGATGTTGTTCAGGCNTGTCCTCATTGTAACTCGGCGCCTGTCATAGGGGCCGGGGTTAACCCCCGCGGCCTNGGACCATTACAGGTNTGGCAAACAGATTTCACCTGGGAGCCNCGTCTATCNCCCCGTCCATGGCTAGCGGTTACGGTAGATACCTCCTCTACCGTCATTGTAGCCACNCAACATGCTAAGTCCAATTCAACATCAGCACAGAATCACTGGGCAACCGCTATCGCCATACTTGGCCTGCCTAGCCAGATTAAGACAGACAACGGATCGTGTTTCATCTCACGCTCAACGCAGGAATGGCTGGCGGTGTGGGGGATCTCCCACATTACGGGCATCCCTGGTAATTCCCAGGGTCAGGCAATAGTGGAACGCGCCAACCGACTCCTCAAGGATAAGATACGTGTCCTTGGGGAGGGGGAAGGATATAGGGACAGGATACCTGTCGGTAGACAGGCTGAGCTCCTGGCGAAAGCCCTCTACGCATTGAACCATTTTGAGCGTGGTGACAGTAAGCGAACGCCAGTGCAGAAGCATTGGCAGCCAAAGGTCTTGGGTGAAGGGCCTCCAGTCAGAGTAAAGACAGATAGCGGACNATGGGAAGAAGGATGGAGGATATTGGTGTGGGGTAGGGGGTACGCCGCAGTAAAACATGNGGAGACAGGGAAAATTGTATGGACTCCATCACGGAAGGTTAAACCGGATCTCAGAAAGGACGNCTGAGATTATAACCCGTTCCGTATTTGTGTAATAAGCAAGACAAGAGTTCCCTTTTGCAGAAGCTGCTGGTGGGAAAACCGAAGCCAACTCCAGAACAACCGGGGGACGGACGACGGGACCGAGAGCCACTCATCAAGAGGAGCACCACACCTGCAACGCCGACACTTCTGATACTGCTGATGTTTATGGTAACGGGGGGGGAGGGAGTACACCTTNTACAACAGCCACGCAATGTTTGGGTCACGTGGGCGAATCTCACGGGGCGGACAGACTTCTGTCTTGGCCTTCAGTCCGCTACCTCTCCCTTCCGCACCTGTTTGGTGGGTTTGCCGAGTTACCAATTGGAGGAGTTTAGGGGATATACGGTCAACTACACTGTGTGTAGGAATGAAACGGACGCTGCTACNCAAACGGCGTGTCTGATTCAATCATTAAACCATACCCTCCCCTGGGACCCCCAAGAATTGGATATTTTAGGGTCTCAAATGATCAGGAACGGAACAACACGTACGTGTGTCACCTTTGGTTCAATGTGCTATACAGAGAACGATCATAGCAGAGTCTGTCACAATTTTGATGGGAATTTTGATGGGGCTGGTGGGGTGGAGGCAGAATTGCGTGACCTCATAGCGAGATGGAGTAATGATGACCCTCGTATAAGACCCTATGCTAACCGATCATGGACGGTGGTGAGTCCAATGAACATGGAGAGTTTTTCGATAGCTGGTGCATATTGTGGNTTCACAAAGAACGAAACTCGTTATTATAAAGGGGGCTCTTCTGATTGGTGTGGGTCAAAAGGAGGAAAATGGTCAGAGGGACACAGGAATGGGACAACATGCTCTGGGTGCGGTGGTAATTGCACGGCGGAATGGAACAATTATGCATATGGGTTCACCTTCAGGAGGAATGTGTCGGAGGTATTGTGGAATAATGGGACTGCTAAAGCACTCCCCCCAGGTATCTTCCTGATTTGTGGCGATAGGGCATGGCAAGGTGTACCAGCTAATCCTCTGGGAGGTCCGTGTTACTTAGGGAAGTTAACGATGTTTGCTCCAAATCATACAGGATGGCTTAATATATCTCGCAGTTTACATCCTCGCAGGCGCCGCCGCGGCGCGAGCCTGGGACCTGAGTGTAACGATGATGTTAAGNTGTGGGGCGTCACAGCACGTATCTTCGCATCGATCTTCGCGCCAGGAGTCTCAGCAGCGGCGGCCTTGGCCCAGATAGAAAGGTTGGCATGTTGGTCGGTAAAACAGGCGAATACGACCACGCTTGTGTTAAATGCTATGCTNGAAGATCTTAATAGTGTCCGTCATGCACTGCTACAGAATAGAGCAGCTATTGACTTCTTGCTGTTGGCTCAAGGACATGGATGTGAGGATGTCGAAGGAATGTGCTGCTTTAACCTCAGTGATCACAGCGTGTCGATTCATAAACAACTACAATGGATGCAAGAACACACGCAGAAGATTAAAGAAGAGAGTGATCCCTTCGGGAACTGGCTGGACGGACTGTTTGGGGGAGTGGGTTCATGGTTAAAGCAATTGCTTAAGGCTCTCGCGGTAGGGCTTGCAATCTTTGTGTGTATTCTGATCTGTCTTCCATGCTTTGTAGGATGCTTGCAGAACTGCCTTGCAACGAATGATGGAAAAGACTTTTGACCATCGGATTGAGTATCACAGACTGCGTGAAAAGTTGTAGAGGGGTTTAGGTTGTTGCGTTCGTGCTGTAACGGGGCAAGGCTTGGCCGAGCACGGGGAGTCGGGTTATGACGGGAAAGGACTCCCTGTTGCTCTGATGNTTGCTTAAAGGATTGCAGTAGAAGGTAGTAGGAATAGTGTGCTGAAATGTATTTAGGATTAGGCGCTTTGCGCTGCTTCGCGATGTACGGGTTAGGCGTGTGTGTAAGTAGTATTTAGCTTAGGGAGGGGGAGATGT >GGLTR1#LTR/ERVK GGERVK1 LTR @cut @general @gallus TGTTGTAATAGGCGTGATCGGGGTCTCGGGATGTAACGTGTCAGGCTCCTCCCCATGTGTTAGGTACGTGCCACGTGTACCATCCAGTGGGCGTACACGAAGGGTTAAAAGATATATAAGTGCTTGTTAGAACTTAATAAACGCCATTTTGCCGCTCATCATATTGGTGTCACCTCGGTATTTGGCCAAGCCGCAGGCTCCCCTAAGCAACGAACATCACGGTTGCCTGCGAAAGGCAACA >GGLTR10A#LTR/ERVK LTRs of EAVHP Matches other GGLTR10 LTRs from pos 140 to 280, so included in this group for ease of analysis. @cut @general @gallus TGTTGTATGCGTAGCGAGGGAAACGAGGTGTGTTGTAGGCGTAGCGAGGGAAACGAGGTGTGACGCGTGCAGGTTCCTATGCCACCTGTGTGTTATGCCACCTGTGTGTGCCAAGTGTAACTTCGTGATTGGAGGAAACACTTGTATTTAAACACGTAGCCTATAGCAATAAACGCCATTTGCCTCACTTACTCCTGGGGTCTGGGTGAGCATCTGGCCCCGACCTGGTAAAGGGTCGGTTTCGCCCAGCAGTAAGCCCTACACGTGGACAGAGGACGAACACCGGACGAGCGAACGGAGACTACATGCAACA >GGLTR10B#LTR/ERVK LTRs of GGERVK10-derived non-autonomous element 1-2% div @cut @general @gallus TGTAGTAGGCGTCTTGCGGGGGCACGGGATGTACGGGACAGGCCTCTCCCTAAACATAGAGAGATAGTGCTATCGTGCTGACCTTGTTGCAGAGAAAACAGGAGAAGAAGAAGGATGATAAAAGAATGTGGAAACGGCCAAATAAGGCACAATGTTATCTGGTGTGAACTAATCAGAGTGGGACATGACAGCACGGTTATCTAGGTAAAAATGTATATAAGCTGTGTTTAGTAGTGAATAAACGCCATTTGCCTCACTTACTCCTGGGGTCTGGGTGAGCATCTGGCCCCGACCTGGTAAAGGGTCGGTTTCGCCCAGCAGTAAGCCCTACATGTGGACAGAGGACGAACACCGGACGAGCGAACGGAGACTACATGCAACA >GGLTR10C-int#LTR/ERVK Internal sequence of GGERVK10 derived non-autonomous element. GG000586, GG0000067, GG000612, GG000135, GG000068 @erv @gallus AATGGTGCCCCGTGTGAGGCGCAGACTGTGTTTTGATGCCCTCTGCGCGGCTACGAGATGTGGGGTGACGCCGTAGCACGAGATTTGGGGTGACGCCCAGCCCGAGTACCCTGAGGAGAGGGGGAGCCTGCAGAAGACGACTGGGGTGACGCCCTGCAGAAGATCGTGGCGACGACGATAGTGCCGGCCGGCAAGTAGAACCTGTGTTGCGGTGGGGTCCGGGGGGGACGACGGGACGCCCACGGAGGACCCGTGTGGTGACGGCGGTGTCGANTGTGAATTCGCGGTGACGGCGACGGGCTGACTATGGAACATGTTCTTAAGGTATTGCTTCAGTTTTGTAAGGATTACTTTGGCAAGTATGCTCCTTCTAAGAAGGATATCCACGCAGTTATTTCCCGGTTAGAGCGGGAGGGGGAGGTTAAAGCCCCCCACGAGATCCTTGATCACCGGAGGTGGGATGATCTCACCTCTGNGTTCGCGCAACATATTATGAGTGCTCAGGAGGGCGGGTCGGAGTTAAAAACTTGGGGTCTGATACTGGGGGCGTTGAAAGCGGCCAGAGTGGAGGGAAAGGTATTGGCGGAGGCTCGATACCTTTTGGGTCTCGGCGGTGGAGGCGAGACACCGGACCCGGTGGGGTCCGATGGGGGCTCGGGAGCAGTTTCTTGCAGGGGCCGAGAGGAGACGGAGCCGCCAATGACCGTTGGCGAGATGGCGCCGGCTGAGCCGACCGCGCTCAGTTCAAAAGAAGACAAACAACAAGAGAGTGGATGTTCGTTGTCTCGTCCCCCTCCCCCGTATCCGGACCCCTCAGGCGGAACGTTGTATCCTTTATCAGAATTACGTCAGTGTTACCTGACTCAAGGGGGCGGAGGAAGCTGTGATCTACACGGGCAGGATCAACTTACTGCCCACATGGGGAGGGACCAGACGAAAGGTCCGTCCAATGCGGACAGGGGGCATAGCCTACCGTCTCTGGTCACTCCCAGGGGCGGTAGTGCGAGTGATAGTGTAGAGGAGAAAGAAGGGACTGGCTTTGAGTGCAGGGGGAGGGATCAAATGACGGACTGGAATCGGATTAGATCGGAGGCTGAGGGGAAGGGTATAGTTCCAGAGGCATTCCCGGTGATTGTGAGTGATCGTGGTCCCGAATGGGTGCCGCCTGACCCCGGGGGTGTTGCGCGCCTGGTGGAATTTATGGATAAAAGAGGCCTGAAATCGCCTCTGACGTTAAATGCACTACAAACTTTGGCTGCACCGGGGCCTCTCCTCCCCCGTGACATCACAAACCTAATGCGTATGGTGCTCAGGCTGGTTCAATATACGTTATGGGAGACGGACTGGATGGCCGAGTTGGGGGGGCGTGCCGGGGCGGCAGGGGTCGGCCCGGGCCGCTCCCTGCGTGGGACCGGCATCCAGCGGCTTTCAGGGAAGGCCGTGGGAGTGGCTTCGCCCCAGGGCCAGCTAGCGAGACTAAGGCCAGGGGAGCTAATAGCAGCCACAGATGCAATGGTGGAAGCGTTTAATAAACTTGTGCATAAGGCCGAACCACCTGCTCCGTGCACAGATATTACCCAGGGCCCGAATGAATCCTTTCAAAGCTTTGCAGACAGGCTTTTAGCTGCTGCAGAGGGGTCTGATCTCCCGGNACCGGCCCAAGGGCCAGTGATCATTGACTGCCTGCAGCAGAAATCGCATGACAATGTTAAGGCATTGCTGCGAGCCGGCCCGAGTACGCTTAATACCCCGGGAGAAGTTATTCAGTATGTCTTAGATAAGCTCAAGGTGGCTCATTTAACTAATGAAGGGCTAGCCACAGCTATTGTCGCAGCTGTTGGCCCGCGACAGCAAAGATCGCTGCAGCAGCAAGGGCTGTGTTTCCGATGCGGCCAGTATGGCCACGTTAGAGCACAATGCCCCTGTGGGGGAGGCCAGTCAGGGCCTCCTGATCACAGGAAGGGCTTGCTAAAGGGTATCCGTGGTCGGGTATGCGGCAGTTAAACATCATGAATCTGGGAAATTCTGTGGGTACCATCGCGAAAAGTAATACCAGATATAAGTAGCATATCTGCAAAAACTGAGTCTAGGTGCGAGTTTTCTACAGAAATTCTTCGTTGGCAGACCGAAGCCAACTCCAGAACAACTGAGGGACAGACGATGGGATCAAGAACCACTCGTCAAGAGGAGCACTACACCTGCAACGCTGACACTTCCGATGTTGCTGATGTTTATGGTGTCCNTGGCGATTACAGCGTGTCACAAACAACTACAATGGACACAAGAACATATGCAGAAGATTAAAGAAGAGCGTGATCCCTTTGGAAGCTGGCTGGACGGACTGTTTGGGGGAACGGGTTCATGGTTAAAGCAATTGCTTAAAGCTCTCGCAGTAGGATTTGCAATCTTTGTGTGTATTCTAATCTGTCTTCCATGCTTTGTAGGATGCTTGCAGAACTGCCTTCAACGAATGATGGACAAGACTTTTGACTATCGCATTGAGTATCATAGATTGCGTGAAAAATTATAGAGGGGTTTAGGTTGTTGCGTTCGTGCTGTAACGGGGCAAGGCTTGGCCGAGCACGGGAAAGAATTCCCTGTTGCTCTGATGATTGCTTAAGAAT >GGLTR10C1#LTR/ERVK LTRs of GGERVK10 GG000020, GG000059, GG000012 bp 204-291 matches the core of GGLTR1 (the LTR of GGERVK1) 1-3% div @cut @general @gallus TGTAGTAGGCGTCTTGCGGGGCTACGGGATGTACGGGACAGGCCTCTCCCTAAGCATAGAGAGACAGTGCTATCGTGCTGACCTTGATGCAGAGAAAACAGGAGAAGAAGAAGGATGAGAAAAGAATGTGGAAACGGCCAAATAAGGCACAATGTTATCTGGTGTGAACCAATCAGAGTGGGACATGACAGCACGGTTTTGTAGGTAAAAATGTATATAAGCTGTGTTTAGTAGTGAATAAACGCCATTTTGCTGCTCATCATATTGGTGTGTGTCTGCAGTCATTTGGCCCTGATCAGGCTATTGGTCAGTGCGTGCAGAGGCCTAACACAGGTGGCTAACATCGTTGTTGCNGAAAGCAACA >GGLTR10C2#LTR/ERVK GG000020, GG000059, GG000012 LTRs of GGERVK10 or derived seqs bp 204-291 matches the core of GGLTR1 (the LTR of GGERVK1) 1-3% div @cut @general @gallus TGTAGTAGGCGTCTTGCGGGGGCACGGGATGTACGGGACAGGCCTCTCCCTAAGCATAGAGAGACAGTGCTATCGTGCTGACCTTGATGCAGAGAAAACAGGAGAAGAAGAAGGATGAGAAAAGAATGTGGAAACGGCCAAATAAGGCACAATGTTATCTGGTGTGAACCAATCAGAGTGGGACATGACAGCACGGTTATGTAGGTAAAAATGTATATAAGCTGTGTTTAGTAGTGAATAAACGCCATTTTGCTGCTCATCATATTGGTGTGCGTCTGCAGTCATTTGGCCCTGATCAGGCTATTGGTCAGTGCGCGCAGAGGGCTAACACAGGTGGCTAACATCGTTGTTGCAGAAAGCAACA >GGLTR10D#LTR/ERVK LTRs of GGERVK10-derived non-autonomous element 1-2% div @cut @general @gallus TGTTGTAGTAAGCGTCTTGCGGGGGCACGGGATGTACGGGACAGGCCTCTCCCTAAGCATAGAGAGACAGTGCTATCGTGCTGACCTTGATGCAGAGAAAACAGGAGAAGAAGAAGAATGAGAAAAGAATGTGGAGACGGCCAAATAGGGCACGGTGTTGTCTGGTATGAACCAATCAGAGTGGGACATGACAGCACGGTTTTGTAGGTAAAAATGTAATATAAGCTGTGTTTTAGTAGTGAATAGAGGCCATTTTACCGCTCATCATATTGGTGTCACCTCGGTATATGGCCAAGCCGCAGGCTCCCCTAAGCAACGAACATCACGGTTGCCTGCGAAAGGCAACA >GGLTR10D-int#LTR/ERVK Internal sequence of GGERVK10 derived non-autonomous element. GG000586, GG0000067, GG000612, GG000135, GG000068 @erv @gallus AGTGGTGACCCCGACGTGATGCTTAGGGGAACGAGTCGGCTGTCTGCTTGACGGGGCAGGAGCCCACCGCGGGGCGTTAGCACTTGCTGGGCGGTGGAAGCCCGGGGACGAGCCCGGGGACAGAGGGAATCTGCAGTCACCCCTCTGTCGGCGGAGGTCGCGGACGAGCGACGGATATAGCCTCCGGAATCACGCCGGAGAAGAGCCTGGGATCCTGGTCTCAATTGGGAGGAGGATCGGAGGCGACATGGAAACCGTCATAAAGGTGATCGCTCACGCGTGTAAGACCTATCACGGGAAGCATGCTCCTTCTCGGAAGGAGATAGCTGCGGTCCTCTCGCTGCTAAATGAGANGGAGGGGCTGTTGACATCGCCCCGCGATATTTGTGACTNCAATAATTGGGATTCGATTACCGCTGCCTTATGCCAGCGCGCAATGGCCACTCAGAAAACAGCGGAGCTNAAAACNTGGGGNCTGATACTGGGGGCGTTGAAAGCGGCCAGAGTTGAGGGAAAGGTATTGGCGGAGGCTCGATACCTTTTGGGTCTCGGCGGAGGAGGCGAGACACNGGACCCGGTCGGGTCCGATGGGGGCTCGGGAGCAGTTTCTTGCAGGGGCCGAGAGGAGACGGAGCCGCCAATGACCGTTGGCGAGATGGCGCCGGCTGAGCCGACCGCGCTCAGTTCAAAAGAAGACAAACAACAAGAGAGTGAANGTTCGTTGTCTCGTCCCCCTCCCCCGTATCCGAACCCCTCAGGCGGAACGTTGTATCCTTTATCAGAATTACGTCAGTGTTACCTGACTCAAGGGGGCGGAGGAAGCTGTGATCTACATGGGCAGGATCAACTTAGTGCCCACATGGGGAGGGACCAGACAAAAGGTCCGTCCAATGCGGACAGGGGGCATAGCCTACCGTCTCTGGTCACTCCCAGGGGCGGTAGTGCGAGTGATAGTGTAGAGGAGAAAGAAGGGACTGGCTTTGAGTGCAGGGGGAGGGATCAAATGACGGACTGGAATGGGATTAGATCGGAGGCTTTGGGGAAGGGTATAGTTCCAGAGGCATTCCGGGTGATTGTGAGTGATCGTGGTCCCGAATGGGTGCCGCCTGACCCCGGGGGTGTTACGCGCCTGGTGGAATTTATGGATAAAAGAGGCCTGAAATCGCCTCTGACATTAAATGCACTACAAACTTTGGCTGCACTGGGGCCTCTCCTCCCCCGTGACATCACAAACTTAATGCGTATGGTGCTCAGGCTGGTTCAGTATACGTTATGGGAGACGGACTGGATGGCCGAGTTGGGGGGCCGTGCCGGGGCGGCAGGGGTCGGCCCGCGCCGCTCCCTGCATGGGACCGGCATCCAGCGGCTTTCAGGGAAGGCCGTGGGAGTGGCTTCGCCCCAGGGCCAGCTAGCGAGACTAAGGCCAGGGGAGCTAATAGCAGCCACAGATGCAATGGTGGAAGCGTTTAATAAACTTGTGCATAAGGCCGAACCACCTGCTCCGTGCACAGATATTACCCAGGGCCCGAATGAATCCTTTCAAAGCTTTGCAGACAGGCTTTTAGCTGCTGCAGAGGGGTCTGATCTCCTGGAACCGGCCCAAGGGCCAGTGATCATTGACTGCCTGCAGCAGAAATCGCATGACAATGTTAAGGCATTGCTGCGAGCCGGCCCAAGTACGCTTAATACCCCGGGAGAAGTTATTCAGTATGTCTTAGATAAGCTCAAGGTGGCTCATTTAACTAATGAAGGGCTAGCCACAGCTATTGTCGTAGCTGTTGGCCCGCGACAGCAAAGATCGCTGCAGCAGCAAGGGCTGTGTTTCCGATGCGGCCAGTATGGCCACGTTAGAGCACAGTGCCCCTGTGGGGGAGGCCAGTCAGGGCCTCCTGATCGCAGGAAGGGCTTGCTAAAGGGTATCCGTCGTCGGGTATGCGGCAGTTAAACATCATGAATCTGGGAAAATTCTGTGGGTACCATCGCGAAAAGTAATACCAGATATAAGTAACATATCTGCAAAAACTGAGTCTAGGTGCGAGTTTTCTACAGAAATTCTTCGTTGGCAAACCGAAGCCAACTCCAGAACAACTGAGGGACAGACGATGGGATCAAGAACCACTCATCAAGAGGAGCACTACACCTGCAACGCTGACACTTCCGATGTTGCTGATGTTTATGGTGTCCCTGGCGATTACAGCGTGTCGCAAACAACTACAATGGACGCAAGAACATATGCAGAAGATTAAAGAAGAGCGTGATCCCTTTGGGAGCTGGCTGGACGGACTGTTTGGGGGAACGGGTTCATGGTTAAAGCAATTGCTTAAGGCTCTCGCAGTAGGGTTTGCAATCTTTGTGTGTATTCTAATCTGTCTTCCACGCTTTGTAGGATGCTTGCAGAACTGCCTTCAACGAATGATGGANAAGACTTTTGACTATCANATTGAGTATCATAGACTGCGTGAAAAGTTGTAGAGGGGTTTAGGTTGTTGCGTTCGTGCTGTAACGGGGCAAGGCTTGGCCGAGCACGGGAAAGGATTCCCTGTTGCTCTGATGATTGCTTAAGAATTGTAGAAAGTAGTAGGAATAGTGTGCTGAAATATATTTAGGATTAGGCGTTTTGCGCTGCTTCGCGATGTACGGGTTAGGCGTGTGTGTAAGTAGTATTTAGCTTAGGGAGGGGGAGA >SRV-LTR#LTR/ERVK The Rous sarcoma virus LTR. Related to original GGLTR2 element (LTR of the Avian myeloblastosis virus), which has no copies in the chicken genome. @general @gallus TGTAGTCTTAATCGTAGGTTAACATGTATATTACCAAATAAGGGAATCGCCTGATGCACCAAATAAGGTATTATATGATCCCATTGGTGGTGAAGGAGCGACCTGAGGGCATATGGGCGTTAACAGAACTGTCTGTCCTTGCGTCATTCCTCATCGGATCATGTACGCGGCAGAGTATGATTGGATAACAGGATGGCACCATTCATCGTGGCGCATGCTGATTGGTGCACTAAGGAGTTGTGTAACCCACGAATGTACTTAAGCTTGTAGTTGCTAACAATAAAGTGCCATTCTACCTCTCACCACATTGGTGTGCACCTGGGTTGATCGCCGGACCGTCGATTCCCTGACGACTGCGAACACCTGAATGAAGCTGAAGGCTTCA >SRV-int#LTR/ERVK Rous sarcoma or avian leukosis virus internal sequence. 1 copy in chicken genome ORFs 280-2385, 2325-5090, 4945-6810 @erv @gallus TTTGGTGACCCCGACGTGATCGTTAGGGAATAGTGGTCGGCCACAGGCGGCGTGGCGATCCTGCCCTCATCCGTCTCGCTTAACGGAGCGAGGACGATGACCCTAGTAGAGGGGGCTGCGGCTTAGGAGGGCAGAAGCTGAGTGACGTCGGAGGGAGCTCCACGGCCGGGGGCCAAGATAACCTACCGAGAACTCAGAGAGTCGTTGGAAGACGGGAAGGAAGCCCGACGACTGAGCAGTCCACCCCAGGCGCGATTCCGGTCGCCCGGTGGATCAAGCATGGAAGCCGTCATAAAGGTGATTTCGTCCGCGTGTAAAACCTATTGCGGGAAAACCTCTCCTTCTAAGAAGGAAATAGGGGCCATGTTGTCCCTGTTACAAAAGGAAGGGTTGCTTATGTCCCTCTCAGACTTATATTCCCCGGGGTCCTGGGATCCCATTACCGCGGCACTCACCCAGCGGGCAATGGTACTTGGGAAATCGGGAGAGTTAAAAACCTGGGGATTGGTTTTGGGGGCATTGAAGGCGGCTCGAGAGGAACAGGTTACATCTGAGCAAGCAAAGTTTTGGTTGGGATTAGGGGGAGGGAGGGTCTCTCCCCCAGGTCCGGAGTGCATCGAGAAACCAGCAACGGAGCGGCGAATCGACAAGGGGGAGGAAGTGGGAGAAACAACTGTGCAGCGAGATGCGAAGATGGCGCCGGAGGAAACGGCCACACCTAAAACCGTTGGCACATCCTGCTATCATTGCGGAACAGCTATTGGCTGTAATTGCGCCACAGCCTCGGCCCCTCCTCCTCCTTATGTGGGGAGTGGTTTGTATCCTTCCCTGGCGGGGGTGGGAGAGCAGCAGGGCCAGGGGGGTGACACACCTCGGGGGGCGGAACAGCCAAGGGCGGAGCCAGGGCACGCGGGTCAGGCCCCTGGGCCGGCCCTGACTGACTGGGCAAGGATCAGGGAGGAGCTTGCGAGTACAGGTCCGCCCGTGGTGGCCATGCCTGTAGTGATTAAGACAGAGGGACCCGCCTGGACCCCTCTGGAGCCAAAATTGATCACAAGACTGGCTGATACGGTCAGGACCAAGGGCTTACGATCCCCGATCACTATGGCAGAAGTGGAAGCGCTTATGTCCTCCCCGCTGCTGCCGCATGACGTCACGAATCTAATGAGAGTTATTTTAGGACCTGCCCCATATGCCTTATGGATGGACGCTTGGGGAGTCCAACTACAGACGGTTATAGCGGCAGCCACTCGCGACCCCCGACACCCAGCGAACGGTCAAGGGCGGGGGGAACGGACTAACTTGGATCGTTTAAAGGGTTTGGCGGATGGAATGGCCGGCAATCCAGAGGGTCAGGCTGCATTATTAAGACCGGGGGAACTGGTTGCTATTACGGCGTCGGCTCTCCAGGCGTTTAGAGAGGTCGCTCGGTTGGCGGAACCCACAGACCCGTGGGCGGAAATTACGCAGGGACCATCTGAGTCCTTTGTGGATTTTGCCAATCGTCTTATAAAGGCGGTTGAAGGGTCAGATCTCCCACCTTCCGCGCGGGCTCCGGTGATCATTGACTGCTTTAGGCAGAAGTCACAGCCAGATATCCAGCAGCTTATACGGGCAGCACCCTCCACGCTGACCACCCCAGGAGAGATAATCAAATATGTGCTAGACAGGCAGAAGACTGCCCCTCTTACGGATCGAGGCATAGCCGCGGCCATGTCGTCTGCTATTCAGCCCTTAGTTATGGCAGTAGTCAATAGAGAGAGGGATGGACAAACTGGGTCGGGTGGTCGTGCCCGAGGGCTCTGCTACACTTGTGGATCCCCGGGACATTATCAGGCGCAGTGCCCGAAAAAACGAAAGTCAGGAAACAGCCGTGAGCGATGTCAGTTGTGTGACGGGATGGGACACAACGCTAAACAGTGCAGAAGGCGGGATGGCAACCAGGGCCAACGCCCAGGAAGAGGCCTCTCTTCGGGGCCGTGGCCCGTCTCTCAGCAGCCTGCCGTCTCGTTAGCGATGGCAATGGAACATAAAGATCGCCCCTTGGTTAGGGTCATTTTGACTAACACTGGGAGTCATCCGGTCAAACAGCGTTCGGTGTATATCACCGCGCTGTTGGACTCTGGAGCGGACATCACTATTATTTCAGAGGAGGACTGGCCCACCGATTGGCCAGTGATGGAGGCCGCGAACCCGCAGATCCATGGGATAGGAGGGGGAATTCCCATGCGAAAATCCCGGGATATGATAGAGGTGGGGGTTATTAACCGAGACGGGTCTTTGGAGCGACCCCTGCTCCTCTTCCCCGCAGTAGCTATGGTTAGAGGGAGTATCCTAGGAAGAGATTGTCTGCAGGGCCTAGGGCTCCGCTTGACAAATTTATAGGGAGGGCCACTGTTCTTACTGTTGCGCTACATCTGGCTATTCCGCTCAAATGGAAGCCAGACCACACGCCTGTGTGGATTGACCAGTGGCCCCTTCCTGAAGGTAAACTTGTAGCGCTAACGCAATTAGTGGAAAAAGAATTACAGTTAGGACATATAGAACCTTCACTTAGTTGTTGGAACACACCTGTCTTTGTGATCCGGAAGGCTTCCGGGTCTTATCGCTTATTGCATGACTTGCGCGCTGTTAACGCCAAGCTTGTTCCTTTTGGGGCCGTCCAACAGGGGGCGCCAGTTCTCTCCGCGCTCCCGCGTGGCTGGCCCCTGATGGTCCTAGACCTCAAGGATTGCTTCTTTTCTATTCCTCTTGCGGAACAAGATCGCGAAGCTTTTGCATTTACGCTCCCCTCTGTGAATAACCAGGCCCCCGCTCGAAGATTCCAATGGAAGGTCTTGCCCCAAGGGATGACCTGTTCTCCCACTATCTGTCAGTTGGTAGTGGGTCAGGTACTTGAGCCCTTGCGACTCAAGCACCCATCTCTGTGCATGTTGCATTATATGGATGATCTTTTGCTAGCCGCCTCAAGTCATGATGGGTTGGAAGCGGCAGGGGAGGAGGTTATCAGTACATTGGAAAGAGCCGGGTTCACCATTTCGCCTGATAAGATCCAGAGGGAGCCCGGAGTACAATATCTTGGGTACAAGTTAGGCAGTACGTATGTAGCACCCGTAGGCCTGGTAGCAGAACCCAGGATAGCCACCTTGTGGGATGTTCAAAAGCTGGTGGGGTCACTTCAGTGGCTTCGCCCAGCGTTAGGAATCCCGCCACGACTGATGGGCCCCTTTTATGAGCAGTTACGAGGGTCAGATCCTAACGAGGCGAGGGAATGGAATCTAGACATGAAAATGGCCTGGAGAGAGATCGTACAGCTTAGCACCACTGCTGCCTTGGAACGATGGGACCCTGCCCTGCCTCTGGAAGGGGCGGTCGCTAGATGTGAACAGGGGGCAATAGGGGTCCTGGGACAGGGACTGTCCACACACCCAAGGCCATGCTTGTGGTTATTCTCCACCCAACCCACCAAGGCGTTTACTGCTTGGTTAGAAGTGCTCACCCTTTTGATTACTAAGCTACGTGCTTCGGCAGTGCGAACCTTTGGCAAGGAGGTTGATATCCTCCTGTTGCCTGCATGCTTTCGGGAGGACCTTCCGCTCCCGGAGGGGATCCTGTTAGCCCTTAAGGGGTTTGCAGGAAAAATCAGGAGTAGTGACACGCCATCTATTTTTGACATTGCGCGCCCACTGCATGTTTCTCTGAAAGTGAGGGTTACCGACCACCCTGTACCGGGACCCACTGTCTTTACCGACGCCTCCTCAAGCACCCATAAGGGGGTGGTAGTCTGGAGGGAGGGCCCAAGGTGGGAGATAAAAGAAATAGCTGATTTGGGGGCAAGTGTACAACAACTGGAAGCACGCGCTGTGGCCATGGCACTTCTGCTGTGGCCGACAACGCCCACTAATGTAGTGACTGACTCCGCGTTTGTTGCGAAAATGTTACTCAAGATGGGACAGGGGGGAGTCCCGTCTACAGCGGCGGCTTTTATTTTAGAGGATGCGTTAAGCCAAAGGTCAGCCATGGCCGCCGTTCTCCACGTGCGGAGTCATTCTGAAGTGCCAGGGTTTTTCACAGAAGGAAATGACGTGGCAGATAGCCAAGCCACCTTTCAAGCGTATCCCTTGAGAGAGGCTAAAGATCTTCATACTGCTCTCCATATTGGACCCCGCGCGCTATCCAAAGCGTGTAATATATCTATGCAGCAGGCTAGGGAGGTTGTTCAGACCTGCCCGCATTGTAATTCAGCCCCTGCGTTGGAGGCCGGGGTAAACCCTAGGGGTTTGGGACCCCTACAGATATGGCAGACAGACTTTACGCTTGAGCCTAGAATGGCCCCCCGTTCCTGGCTCGCTGTTACTGTGGATACCGCCTCATCGGCGATAGTCGTAACTCAGCATGGCCGTGTCACATCGGTTGCTGCACAACATCATTGGGCCACGGCTATCGCCGTTTTGGGAAGACCAAAGGCCATAAAAACAGATAACGGGTCCTGCTTCACGTCTAAATCCACGCGAGAATGGCTCGCGAGATGGGGGATAGCACACACCACCGGGATTCCGGGTAATTCCCAGGGTCAAGCTATGGTAGAGCGGGCCAACCGGCTCCTGAAAGATAAGATCCGTGTGCTTGCGGAGGGGGACGGCTTTATGAAAAGAATCCCCACCAGCAAACAGGGGGAACTACTAGCCAAGGCAATGTATGCCCTCAATCACTTTGAGCGTGGTGAAAACACAAAAACACCGATACAAAAACACTGGAGACCTACCGTTCTTACAGAAGGACCCCCGGTTAAAATACGAATAGAGACAGGGGAGTGGGAAAAAGGATGGAACGTGCTGGTCTGGGGACGAGGTTATGCCGCTGTGAAAAACAGGGACACTGATAAGGTTATTTGGGTACCCTCTCGAAAAGTTAAACCGGACATCACCCAAAAGGATGAGGTGACTAAGAAAGATGAGGCGAGCCCTCTTTTTGCAGGCATTTCTGACTGGATACCCTGGGGAGACAAGCAAGAAGGACTCCAAGGAGAAACCGCTAGCAACAAGCAAGAAAGACCCGGAGAAGACACCCTTGCTGCCAACGAGAGTTAATTATATTCTCATTATTGGTGTCCTGGTCTTGTGTGAGGTTACGGGGGTAAGAGCTGATGTTCACTTACTCGAGCAGCCAGGGAACCTTTGGATTACATGGGCCAACCGTACAGGCCAAACGGATTTCTGCCTCTCTACACAGTCAGCCACCTCCCCTTTTCAAACATGTTTGATAGGTATCCCGTCCCCTATTTCCGAAGGTGATTTTAAGGGATACGTCTCTGATAATTGCACCACCTTGGGAACTGACCGGTTAGTCTCGTCAGCCAGCATTACCGGCGGCCCTGACAACAGCACCACCCTCACTTATCGAAAGGTTTCATGCTTGCTGTTAAAGCTGAATGTCTCTATGTGGGATGAGCCACCGGAACTACAGCTGCTAGGTTCCCAGTCTCTCCCTAACATTACTAATATTACTCAGATTTCTGGTGTAACTGGGGGATGCGTAGGCTTCACCCCACACTCCAATCCAAGTGGTGTTTACGGGTGGGACCGGAGACAGGTTACACACAACTTCTTGATCGCCCCGTGGGTCAATCCTTTCTTTAACAGCGCTTCTAACTCCACGGAACCGTTTACGGTGGTGACAGCGGATAGACACAATCTTTTTATGGGGAGTGAGTACTGCGGTGCATATGGCTACAGATTTTGGGAAATATATAATTGCTCACACAGATTTGATAATTTTGATATTTACACCTGTGGAGATGTGCAGACAGTCAAATCCCCCGAAAAACAGTGTGTGGGGGGAGGAGGTATATGGGTTAATCAATCAAAGGAAATTAATGAGACAGAGCCGTTCAGTTTTACTGCGAACTGTACAGCTAGTAATTTGGGTAATGTCAGCGGATGTTGTGGAAAAACGATCACGATTCTCCCATCAGGGGCGTGGATCGACAGCACACAAGGTAGTTTCACCAAACCAAAAGCGCTACCACCCGCAATTTTCCTCATTTGTGGGGATCGCGCATGGCAAGGAATTCCCAGTCGTCCGGTAGGGGGCCCCTGCTATTTAGGCAAGCTTACCATGTTAGCACCTAACCATACAGATATTCTCAAGGTGCTTGCCAATTCATCGCGGACAGGTATAAGACGTAAACGAAGCACCTCACACCTGGATGATACATGCTCAGATGAAGTGCAGCTTTGGGGTCCTACAGCAAGAATCTTTGCATCTATCTTAGCCCCGGGGGTAGCAGCTGCGCAAGCCTTAAGAGAAATTGAGAGACTAGCCTGTTGGTCCGTTAAACAGGCTAACTTGACAACATCACTCCTCGGGGACTTATTGGATGATGTCACGAGTATTCGACACGCGGTCCTGCAGAACCGAGCGGCTATTGACTTCTTGCTTCTAGCTCACGGCCATGGCTGTGAGGACGTTGCCGGAATGTGTTGTTTCAATCTGAGTGATCACAGTGAGTCTATACAGAAGAAGTTCCAGCTAATGAAGGAACATGTCAATAAGATCGGCGTGGACAGCGACCCAATCGGAAGTTGGCTGCGAGGATTATTCGGGGGAATAGGGGAATGGGCCGTTCATTTGCTGAAAGGACTGCTTTTGGGGCTTGTAGTTATTTTGTTGCTAGTAGTGTGCCTGCCTTGCCTTTTGCAAATTGTGTCCAGTAGCATCCGAAAGATGATTAATAATTCAATCAGCTATCACACGGAATATCAGAAGTTGCAAAAGGCTTGTAGGCAGCCCGAAAATGGAGCAGTGTAAAGCAGTACATGGGTGGTGGTATGAAACTTGCGAATCGGGCTGTAACGGGGCAAGGCTTGACTGAGGGGACCATAGTATGTATAGGCGAAAGGCGGGGCTTCGGTTGTACGCGGTTAGGAGTCCCCTCAGGATACAGTAGTTGCGCTTATGCATAGGGAGGGGGAAA >ENS1-LTR#LTR/ERVL GG000032; 5 bp target site dups 0-3% subst. LTR of element with "ENS' coding region (lMech. Dev. 103 (1-2), 79-91 (2001), Nature 406 (6791), 74-78 (2000)) @cut @general @gallus TGTAAGAGACTATTCTTTTATATCATTGACTCAAAGTTTGCTGAGGAACAAGTCCAGGCAAGTCCTGGGCAAAGGCAGAGAAATCTTTTGTCTTGAGGACACTGATGGACAGGTCCTGGCTAAGGATTGTGAAATCCTCTAAGGAGCACAGATGGACAAGGCCAGGGGCATCGAGAGAGAGATAAGCTGCCGCTAATGGCCGGGAAACGGTCTTTTTGTGTGGACTTATCTCAAGGAAAATGGCCATCTCAGGAGGTATGCACAGGACTCTTGCTCAAGCACCCAGGAATGTCACGTAGGCAGCAGAAAATGGAGGATAAAAGAGGGTCCAATAACCACAACGGTGGAAGCTGATCCTTCACCACAACCACGGCAACGGGAGAGGCTTATCTCTCACCACGACAGACTTGAGGGGTTCTCTGCCAACTGATCTCTCACCGCAACGTGTAGACGGATCTCTACGTGGAGACTGATCTCTCACCACGACACGAGCTTCCTGCCTTCCGATCCTCCTCTACGGACCGTTTGCTGACGGACTTCCCTGGGCCTGCTACCTGAGACCTGCTGCTTCCTCCCTGACCTGCATCCTCTCGCTGCCCCAGACCGGCCTCGCTGCTCCTGCCCTTCGGCCTCGGACCGTCGGAACGTCGTGCAACGGGACTGCTGCCGGATCCTGGTGGTGACTATCCCCGCTTTACGCAATTCTTGCCTCTTTCTATCTTTTCTATCGCTCGCCTTCCCTTCCCCATCACCCCAATCCTTAATAGCGTCCGTCCTCCCCTTTCCCCATCTCCCTTATTAACATTTGTAATAAACTGGTCGGACCAACATTTGAACCGCTGTTTCTTAATCTCACGCCGGGCATACATATTTCAAAGAACCTCCTCTCCCTCCTATAAATTGGAGCGAGACA >ENS1-int#LTR/ERVL ORF from 913-2385. This is the gag protein from ENS3. ENS1 thereby resembles MaLRs, although ENS1 is either a very recent derivative of ENS3 (<2% diverged) or ENS3 is reconstituted from an ERV and ENS1. @erv @gallus TTTTTTATGGCGTAGTCGAAGCAGGATACCCGCCGTGAGAGTGTTGTCCTTCCAGATAATAGTCTGAAACTTTCTGCGTGTACCTCCTGGAGTTGCAAGAAGCGATACTTTTTGATAACTTAGACGTGAGCACCTCTCCAGGAAGATCGCTTCATACTCTGAAACTTTACTATTTATGTGTGTACCTCTCGAGGATGTATGAATTTTGTCTAATTGCATTTATTTAATACGTGTGTGCCTCCTCGGGAAGATCTCTCTGCATTTTGTGGTTTAAGGAACCCCTCTACGTGTGCGCCTCTTGGGGAAGTAAGATACACGTTTTTTGACTTAAAAAACGTGTGCGCCTCTCCAAGAAGTTTACTCACTTTGCTGAAAATTGTTTATGTATGCACCTCTCGAGGACGTATGAATCTTGTCTAATTGCATTTAATACGTGTGTGCCTCCTCGGGAAGACCTCTCTGCATTTTGTGACTTAAGGATCTTGCAACTTAAGTGTGAAATTTGAACCTCTTTCGTGCGTGCCTCTTGGAGAAGTGAGGAAGTGATACACGTTTTTTGACTTAAAAAACGTGTGCGCCTCTCCAAGAAGTTTATTCACTTTGTTGAANCCTAGAAAGTGTTGTTTTAGCTTAAAATTAACTGCGGGTTTTGAAACCGAAGTGTGCCTTGCTTTGGTGTGGTGTTTGCAGTTTTTTGTGTGGCTTCGCAGGGAAGTTAGGAGCGATTTTAAGTTGGTTTAGCCTCTTTGTCCTTGTGCTTTCCTCAACAAAGGGAGGCGCGATCGGAACATTTACATTTCTTTAGGTGTGGTGTGCCTCCGTGGGAGAGGCGATAAGGAGTTATTTGTACTTTTGAATAGGAGTACCTCCTCCTCTCTCAGTGTATATCTTTCTGCGTATTTAGAAATGAGCAACAGTATGGCCAGTATGAAAAGTGAAGATGTATTATTTGATCTTTTAGAAAAGCATGGTGCTCGGCCTTCTGTATCAGGGGTGGATTGGGCACGACAGAACTGGTATAATTTGCAAAGTGTTTCAGACCGTATTCGTGTTTTACAAAATGAGGCTCGTACTCGGGCCGGAAAAGGGAAATCTTTTATTTGTGCAGTACTCGGTGCTGCTTTAAAAGCAGCTGTGGAGTTCCGAGAGGAAAAGAACTCTACGGAAACCCAGACTATTCAAGCATTACAGGAATCGGTTAAAGTGACGCAAGAATTGGTAAAATCTCTGCGAAGCCAAATAACGAGTCTTGAGGATCAATTAGAAAGAGAAAAACATAATTCGGTTCTGTTGCAAACAGCTTTTAAGGAGCTGATAACGTGTAAGGACACCGGTGACACTGTTGCCCACAGTGCACCTCAAGAAAAAGTTTATCCTCAAGGGAAATTACAAGAGGTGAAGGAAAGGCTAGATAAATTAGAGGCCTCTCCAGCCCACATTCGTCCTTTGATAAAAACTGAATATACTTTCGATAACAGTGAGGATCTAGATCCTCAAATGAATGTTAAGGAAATTCCCTTTTCGGCCACTGAACTGGCCAAACTGAAAAAGGATTTCAGCCGCTCCCCAAAGGAGTCTGAAACAGAGTACGTCTGGAGAGTTAGTCTCACTGGCGGAGACCAGATCCTACTAACAGAGAAAGAAGCTGAAGGTTATTGGGGACCAGGAGTATTTTTAACCACTGGCAATAATCGTGCTCCCTGGTCCTTAACACAGAGGGCTGCCTATTGGGCAGGGGGTCTCAACCCTTTAGAAAGGGGGGACCCTCTTGCTATTACCGGAACTATCGACCAGTTAGTGGAGAATGTTCAGAAAGCTGCTTGTCTCCAAATGATGTATGATAGAAAGTTGCAGCCACATCATGAATCACCCATGATGTTACCTGTTAATCCGGAGAGACTGACACCTCTAATTAGGGGACTTCCTGAATCGTTAAAACCTATAGGTATACAACTCCAAGGAAAGATACAAGCCATGTCTCAGGGAGAGAGAACCTGGGCAGCGTTGGAGGGATCTGTAGCCCCTAACCACCAGTCAGGACCCAAAGTGTGGACTTGGGGAGAGGTTGCCCAAGAATTAATTAACTATGGAAGAAAATATGGGCCGGTGGTTTCTACCTCCAGTAAATTTGAGCCAAGAGGAGTAAGGCTTGCAGTAGCCAGCCTTGCCTCCAGGCCACCTAGCCCAAAACTTATTGGAACCAAAAAGGTTTCATCCCCAGTAAAAACGGGGACACGATGCATTGATCATAAACGCAATGGACTTTGGACTCTGGGCTGGAGAAAGGGTATTCCACGAGATTTGATGAATGGATTACCCACAGTCAGATTAGAGAAATTAGTTAACTGCTGGCCAGAACAAAAGCTCAAGGGGAGCTGATGCCTTCGCCCCCCCCCTCCCAGGTGAGCGGGAGGTGGGTGGGGGGGTGAAGGGTGGATGTTTATTAGGAAGCTCACGACTAAAGGAAACAATTTGTTAATTACTTGTTTATTTATTATTAGTGGTTATTGTCAAATGTACGGTTGTCTCTTTTCTCTCTTCTATTCATTATGTAATATTCATGTTACCACTCCTGAAGAATCACGGGGTGGTGTCTGTGGCAAGTTGCATTGTGTACTGTTGCAACTCTTATGTTTGTACCTTGTATGATTCCATGTTTTATACAAGATGTTGTATCCCCTATTTACTTTGTAACCAAACCTGAAAAATGTTTGTAATGATTGTATGAAACATTTGATTCCACAACNCCTCCCTCCTTTACCCTTGTGCTTGCTATCTTCTTCTCACCACCATGGATGCCCAGTGTCCCATTTTTAAGCAACCTTTGAGTCACGGGGTGG >ENS1B-LTR#LTR/ERVL GG000028 5 bp tds; 4% subst @cut @general @gallus TGTAAGAGATTATTCTTTTATATGATTGACTCAAAGTTTGCTGAGGAACAAGTCCAGGCAAGTCCTGGGCAAAGGTAGAGAAATCTTCTGTCTGGAGGACACTGATGGACAGGTCCTGGCTAAGGGTTGTGAAATCCTTTAAGGAGCACAGATGGACAAGGCCAGGGGCAACGAGAGAGGGATAAGCTGCTGATAATGGCCGGGAAACGGTCTTTTGTGTGGACTTATCTCGAGGAAGATGGCCATCTCAGGAGGTACGCACATGACTCTTGCTCAAGCACCCAGGGATGTCACGTAGGCAGGAAAAAANGGAGGATAAAAGAGGGTCCAACAACCATGAGGAGAGGGTTTCTGCCATCAGATCCCTCACCACGACGGACTAGGGGTTTCTGCCATCAGATCCCTCACCACGACGGACTCGAGGTTTCTGCCATCAGATCCCTCACTACGGACCGTATGCTGACGGACTTCCCTGGGCCTGCTACCTGAGACCTGCTGCTTCCTCCCGGACTTACTCTGCGGCTTCTTCCTGGACCCACCCGGTACCTGCACCCTCTCGTTGCCCAAGACCGGCCTCGCTGCTCCTGCCCTTCGGCCTCGGACCGTCGGAACGTCGTGCAACGGGACTACTGCCGGATCCTGGTGGTGACTATCCCCGCTTTACGCAATTCTTGCTTCTTTCTATCTTTTCTATCGCTCGCCTTCCCTTCCCCATCACCCCAATCCGTAATAGTGTCCGTCCTCCCCTTTCTTCATCTCCCTTATTAACATTTGTAATAAACTGGTCGGACCAACATTTGAACCGTTGTTTCTTAATCTCACGCCGGGCATACATATTTCAAAGAACCTCCTCTCCCTCCTATAAATTGGAGCGAGACA >ENS3-int#LTR/ERVL Autonomous, currently active ERVL. ORF1 907-2367 encodes the "early response to neural induction ERNI" protein. Matches nothing, but most likely having a gag role. ORF2 2484-5555 enocdes a pol protein at least 35% identical (52% similar) to that of ERVL. Surprisingly, the ENV protein (ORF 5781-7241) is most siilar to that of class I ERVs in mammals, like HERVH48 and Harlequin. First 1354 bp are 'borrowed' from ENS1, as no full element is available and the sequence is identical to ENS1 where they overlap elsewhere. ENS3 named and described by Acloque,H., Risson,V., Birot,A.M., Kunita,R., Pain,B. and Samarut,J. Identification of a new gene family specifically expressed in chicken embryonic stem cells and early embryo. Mech. Dev. 103 (1-2), 79-91 (2001). @erv @gallus TTTTTTATGGCGTAGTCGAAGCAGGATACCCGCCGTGAGAGTGTTGTCCTTCCAGATAATAGTCTGAAACTTTCTGCGTGTACCTCCTGGAGTTGCAAGAAGCGATACTTTTTGATAACTTAGACGTGAGCACCTCTCCAGGAAGATCGCTTCATACTCTGAAACTTTACTATTTATGTGTGTACCTCTCGAGGATGTATGAATTTTGTCTAATTGCATTTATTTAATACGTGTGTGCCTCCTCGGGAAGATCTCTCTGCATTTTGTGGTTTAAGGAACCCCTCTACGTGTGCGCCTCTTGGGGAAGTAAGATACACGTTTTTTGACTTAAAAAACGTGTGCGCCTCTCCAAGAAGTTTACTCACTTTGCTGAAAATTGTTTATGTATGCACCTCTCGAGGACGTATGAATCTTGTCTAATTGCATTTAATACGTGTGTGCCTCCTCGGGAAGACCTCTCTGCATTTTGTGACTTAAGGATCTTGCAACTTAAGTGTGAAATTTGAACCTCTTTCGTGCGTGCCTCTTGGAGAAGTGAGGAAGTGATACACGTTTTTTGACTTAAAAAACGTGTGCGCCTCTCCAAGAAGTTTATTCACTTTGTTGAANCCTAGAAAGTGTTGTTTTAGCTTAAAATTAACTGCGGGTTTTGAAACCGAAGTGTGCCTTGCTTTGGTGTGGTGTTTGCAGTTTTTTGTGTGGCTTCGCAGGGAAGTTAGGAGCGATTTTAAGTTGGTTTAGCCTCTTTGTCCTTGTGCTTTCCTCAACAAAGGGAGGCGCGATCGGAACATTTACATTTCTTTAGGTGTGGTGTGCCTCCGTGGGAGAGGCGATAAGGAGTTATTTGTACTTTTGAATAGGAGTACCTCCTCCTCTCTCAGTGTATATCTTTCTGCGTATTTAGAAATGAGCAACAGTATGGCCAGTATGAAAAGTGAAGATGTATTATTTGATCTTTTAGAAAAGCATGGTGCTCGGCCTTCTGTATCAGGGGTGGATTGGGCACGACAGAACTGGTATAATTTGCAAAGTGTTTCAGACCGTATTCGTGTTTTACAAAATGAGGCTCGTACTCGGGCCGGAAAAGGGAAATCTTTTATTTGTGCAGTACTCGGTGCTGCTTTAAAAGCAGCTGTGGAGTTCCGAGAGGAAAAGAACTCTACGGAAACCCAGACTATTCAAGCATTACAGGAATCGGTTAAAGTGACGCAAGAATTGGTAAAATCTCTGCGAAGCCAAATAACGAGTCTTGAGGATCAATTAGAAAGAGAAAAACATAATTCGGTTCTGTTGCAAACAGCTTTTAAGGAGCTGATAACGTGTAAGGACACCGGTGACACTGTTGCCCACAGTGCACCTCAAGAAAAAGTTTATCCTCAAGGGAAATTACAAGAGGTCAATGAAAGGCTAGATAAATTAGAGGCCTCTCCAGCCCACATTTTTCCTTTGATAAAAACTGAATATACTTACGATAATAGTGAGGATCTAGATCCTCAAATGAATGTTAAGGATATTCCCTTTTCAGCCACTGAACTGGCCAAACTGAAAAAGGATTTCAGTCGCTCCCCAAAGGAGTCTGAAACAGAGTACGTCTGGAGAGTTAGTCTCACTGGCGGAGACCAGATCCTACTAACAGAGAAAGAAGCTGAGGGTTATTGGGGACCAGGAGTATTTTTAACCACTGGCAATAATCGTGCTCCCTGGTCCTTAACACAGAGGGCTGCCTATTGGGCAGGGGGTCTCAACCCTTTAGAAAGGGGGGACCCTCTTGCTATTACCGGAACTATCGACCAGTTAGTGGAGAATGTTCAGAAAGCTGCTTGTCTCCAAATGATGTATGATAGAAAGTTGCAGCTACATCATGAATCACCCATGATGTTACCTGTTAATCCGGAGAGACTGACACCTCTAATTAGGGGACTTCCTGAATCGCTAAAACCTATAGGTATACAACTCCAAGGAAAGATACAAGCCATGTCTCAGGGAGAGAGAACCTGGGCAGCGTTGGAGGGATCTGTAGCCCCTAACCACCAGTCAGGATCCAAAGTGTGGACTTGGGGAGAGGTTGCCCAAGAATTAATTAACTATGGAAGAAAATATGGGCCGGTGGTTTCTACCTCCAGTAAATTTGAGCCAAGAGGAGTAAGGCTTGCAGTAGCCAGCCTTGCCTCCAGGCCACCTAGCCCAAAACTTAATGAAATCAAAAAGATTTCATCCCCGGTAAAAACGGGTAGACGGAGCATTGATCATAAACGCAGTGGACTTTGGGCTCTGGGCTGGAAAAAGGGTATTCCACGACATTTGATGGATGGATTAACAACAGATAGGCTTGAGATGCTTGTGACTGAATGCCCTTACAAAGCTTGAAGAAAGGCAAAGTCCTAGGTTCCTAGTGCCCCCCCCGCAACACCAGAGGAGCTACTGCAATCATCGGGAAACTAATTCCTTCACCCCTTTCAAGTGAGCGGGGGGGTGAAGGGTGGATGTTTATTAGGAAGCTCACGACTAAAGGAAACGATCTGTTAATTACTTGCATTGTCGAACCTAAATTAGTCCCCATAACGTTTCTGGTGGATACAGGAGCACAGATTTCAGCTATCAAAAGGGAGGATGCTGACCGTGCTGGTGTAACCTTATCTCGCAGAAAAATATTCGTGGCAGATGCTATGGGCGGTGTACATTCACAGAACATGGCAACAGTAAGGCTAAGGTTACCTGGGGAAGAGCGCTCTCAGGATGTCCCCATGGTTGTGGGAACTCTCCCGCTTAATTTGTTAGGACTTGATATGTTGAAGGGCAAAAGTTGGACAGATGATAAAGGGAGAGAGTGGATGTTTGGTGTCCCTTCCCTAAATATCCGTTTATTACAGACAGCACCACCACTCCCACCCTCCAATTTGACCTGTGTTAAACCTTACCCTTTACCTCTAGGAGCACGTAGTGGTATTAGCCCAGTGCTGGCAGAATTAAAAGAACAGGGAATTGTGATACCCACCCATTCCCCTTTTAATTCCCCTGTGTGGCCTGTTAGGAAACCAAATGGCAAATGGAGATTGACTATTGATTATCGTAGACTGAATGCTAACACTGGACCACTAACTGCAGCAGTGCCTAACATTTTTGAATTAATAGCAGCTATCCAAGAGCAAGCTCACCCTTTTATGGCCACCATTGATGTTAAAGATATGTTCTTTATGGTTCCCCTACATCCCGATGATCAACTCCGTTTTGCTTTTACATGGGAAGGCCAGCAGTATACCTTTACCCGCCTTCCTCAGGGGTTCAAGCACTCCCCAACTTTGGCTCATTATGCCCTGGCAAAAGAACTTGAACAGATCCCCTTGGAGGAGGGGGTTAGGCTTTATCAATACATTGATGATATCCTCATAGGAGGTGATCATTTGACACCAGTAAAAATAATGCATGACAAAATAATCAAACGACTAGAGGAGCTGGGATTGACGATTCCCCCAGACAAAATCCAGTCCCCAGCTGCTGAGGTAAAATTCTTGGGCATCTGGTGGAAGGGTGGTATGGCCTGCATTCCACAGGATACCCTCTCAGCTTTAGACCAACTCAAAATGCCAGAGAATAAGAAGGAATTACAGCATGCTCTTGGACTTTTAGTGTTCTGGAGAAAACACATCCCTGATTTTTCTATTATTGCCCGTCCATTGTATGACTTGTTGCGAAAGGGAGTATCATGGGGATGGACCCCTGTTCATGAAGAAGCCTTGCAGCTTCTAATCTTTGAAGCTATCACCCACCAGTCCTTAGGTCCTATCCATCCCTCTGACCCTGTACAGATAGAATGGGGATTTGCTCACTCAGGATTGTCTATACATCTTTGGCAAAAGGGCCCAGAAGGTCCCATTAGACCTATTGGATTCTATTCCCGCAGCTTTAAAGACGCAGAGAAACGATACTCTCAATTGGAGAAGGGGCTATTTGTTGTTAGCCTAGCCCTGCGAGAAGCTGAGCGAACTATACGACAGCAGCCCATAATACTGAGAGGCCCATTTAAGGTTATCAAGTCTGTGATGTCTGGCACCTCTCCCCCTGACGGGGTGGCACAGAGAGCTTCTGTCCGAAAGTGGTATGCTCAAATTGAACATTATTGTAATATCTTTAAAGTCACAGAGGGTGCCCCGAAAACACTTGCCATCCAGGATGATATTCTGTCTACCACTGATACTGACCTTCCCTCTGTTGTCCAGGTTGCTCCCCCATATTCAGACCAGTTACAAAATGTTTGGTTCACAGATGCCTCCTCCAAGCGTGAAGGTAAAGTATGGAAGTATTGGGCAGTGGCCCTACAGATAGGGACTGACCTCACTATTATCACTGAGGGGGAGGGGAGTGCTCAGGTTGGGGAGCTAGTAGCAGTATGGAGTGTGTTCCAACACGAATCAGAGTCCACTACACGTGTGCATATTTATACTGACTCGTATGCCGTCTTCAAAGGCTGCACAGAGTGGCTTCCCTTTTGGGAGAAAAATAACTGGGAAGTTAACCGTATCCCAGTGTGGCAAAAGGAAAAATGGCAGGACATTATCTCTATTGCTAAAAAGGGACAATTTTCTGTTGCATGGGTTGCAGCACACCAGGAGGATGGGACCCCTGTTAGTCATTGGAACAACAGAGCAGATGAACTTGCTAGGATTGCTCCACTGAGACAAGGAGAACCGGACAGTGACAACTGGGAGAGACTTGTGGAGTGGTTGCATGTAAAAAGAGGGCATACAGGTGCTCTTGATCTCTACCGTGAGACCCAAGCCCGTGGCTGGCCTGTTACCAGGGAACAGTGCCGCACTTGCATTTCTGCTTGCGACCTATGCCGCACCCGTCTGGGCCAACACCCCTTACAGGATGCTCCTCTCCATTTAAGGGAGGGAAAGCACCTATGGGAAACATGGCAGATTGATTACATTGGCCCCTTCCGTAAATCTGAAGGTAAACAGTATGTGCTAGTAGGTGTAGAAATAATCTCTGGCCTACTTCAGGCTGAATCTTGCCCTCGAGCAACAGGGGAAAACACTGTAAAGGCACTAAAGAAATGGTTTAGCATTCTTCCAAAACCCACTTCCATCCAATCAGATAACGGCTCTCATTTCACCTCAGGGGTAGTTCAAGAATGGGCCAGGGAGGAAGGCATTCATTGGATCTTTCACACCCCCTACTACCCGCAGGCTAATGGCATTGTGGAACGATCCAATGGCCTCCTTAAGAAATTTCTGAAACCGGAAAAAACCAATTGGTCCACCCGCACCTCTGATGCGGTCAGAAGGGTAAATGATCGCTGGGGAATTAATGGCTGTCCTCGATTCAACGCTTTCTACCCCAAGGCCCCGCCACTTCTCCCAATTACACTTAATCCAGATAAGTTAGAAGAACCTTCTTATTCCCCTGGCCAACCTGTGTTGGTCGACTTGCCTCATGTAGGGCCAGTACCCCTGACTCTAATGGAATCTCTTAACAAATATACTTGGAGGGCCAAGGACGCCCGGGAAAAGGAATACAAGATTAACGCTCGCTGGATTATTCCCTCATTTTAACCATATTAACAAAGCCCAAGAGGGCAAGTCGATGTTTTGTTTTGTTTTACAGAAGACCTTCGTGGGACTCTAGTTGAACACAGTAGCAGCAGATCTTAATTATTGGTGTTTTGGTGATTATCTATGCAACACTCGGGTAAAACGTTATTTTTGTTAATCTGGGCTGTGACCTCTGTAACAGTCAGTCATCCCCTTACAGACGCTGGGGGTGGGGAAAATGGTATAAAAAACTCTTTTTTTTCAACTGGCTGAGCAAGTAGCAAATGTCTATAACTTAACTAATTGTTGGGTCTGTGGAGGACCCATGGGACTTGAAACTTGGCCCTGGGTGTCCACCCCTATTGCCCCTAAATGGCTTGCAAGCAACTACAGTGAAGCTAACCCCAGTACCCACTGGGAAGATAAGAATATGTCTCCATGGCCAGTACAATATCCTGCTATGGGAATGTATTGTCTGAATCGTACACAACCTGGTGGTATCTATGTTGGGACTAGCAATTGTACTTGGGTTTATCGTAAAGGGACTCATGGAATAGTACCACAGATAAGGGATGATCAGTGGGGATGGTACAATCAGTCGGGAATGAGACACAGGTTTTCTCATTTTTGGTCCTCCACCAACAACACTCTGTTTACTGAAGCTGGAGGGAAGAAATGTATATGGAGGCCTGATGCGGGAGCTTGGAAATGTAAGTGGTGTAAGGATGAAAGTATAACTGGTAACGGCTGGAACTGCAATGTGTTAGGACATCCTTTTGGACCTCTCAACACCACATACTTTCAAGCTAAGGAACATGTAAATGAATTAACCAACAAATGGAATGGACCTTTCGAAAATGGCTCAGTAGCGTTAAAGGGACATTACTGGATTTGTGGTCATTATGCGTATAAACGACTACCTGCAAATTGGACTGGGGTATGTTATGTTGGAGTAATCCGCCCGATGTTCTTTTTGCTCCCAGGAAAGGATGGCAGTGAATTAGGTGTCAGAGTATATGATGATCTGAACCGACACAGGAGGTCTATTGACACTTCCCTAACACGTGGTAGTGGCCAAACTTGGGGCAAAGATGACTGGCCCCCTCAACGTATAATCAAACACTACGGGCCAGCTACCTGGAACCCCAATGAATGGATTAGTGGTGCTCGAGAGCCCATCTATAACCTAAACCGTATTATCCGATTACAAGCCATCCTTGAAATCATTACTAATGAAACAGCCTATGCCCTTGATCTCCTTGCAGATCAAGCCTCACAGATGCGGGCGGCAATACTCCAGCATCGCATTGTTCTGGACTACCTGTTAGCTGAAGAAGGGGGTGTCTGTGGCAAATTAAATGATTCTACTTGCTGTCTAAAAATTGATGATAATGGTAAAGTAGTTAAACAAATTGCTCAAGGTATACGGAAAATAGCCCATGTTCCCGTCCAAACATGGAAAAGCCCAGACCTCGATCTCTTTTCCTGGCTCCCAGGTGGCCCATGGGTAAAACGCATCTTGTTTTATTTATTGTGTGCTGTTGTAACTCTCATGTTTGTCCCTTGCATGATACCATGTTTCATTCAACTGATACAGCGTGTTGTTTCTTCTATGTACTTTGTAACCTCCTCTACTGAGGGGGATGTCAAGCACATCAGGGGAACGTTTGTAACCAAGACTGAGAAATCTTTTGTAACGATTGTATAAAACATTTCATTCCCTGTCCCCTCCTTCCTTTACCCTTATGCTTGCTATCTTTTTCTCACCATCATGGATGCCCAGTGTCCCATTTTTAAGCAACCTTTGAGTCACGGGGTGG >GGERVL18-LTR#LTR/ERVL around 10% divergence; first 250 bp 70-80% similar to GGLTR4A and B @cut @general @gallus TGTATGGGAACTGTTGAATCACGGCCTGAACCTCTGATTGATCACCTGAGGCAAGCACTGAGTCAGCCGCGGGAGCACAGGTGAAGGCAATTCACCTGTGTGACCGGAAGGGGTGGAGCCTGGCTCCACCTCTCCTAGACCCCATTTAAGGGCTGACTGCCACTGAGGAAGGATCTCTTTCTGGAGATCGCTCCTCTTGGAGTTTTTTCTGTGAGCCTAGGACACGGGTGAGCATTTTCATTTATTTCTGATTATCCCTTTCCAACGTGATAATCTTTCTAGCTGTACGATCTGTGGATACCAGCCTAACCACACCACTCTGTATATTTGTTGATTATACA >GGERVL18#LTR/ERVL GG000165, GG000008 Two ORFs, gag from 39-1616 and pol from 1712-4993 (or 1529-4993 if polyprotein created by frameshift). Matches the primate element HERVL18 by 70% at the DNA level over the length of ORF2. gag product also closest to that of HERVL18 and RMER15-int and quite different from (H/M)ERVL @erv @gallus CTTGGCGAGGCAGGCCAAATATACTAAAATATATATATATGTNTGTGTCTTTTCTNTGGAATNTCTATAAATGGGTCAGGGGGGAGAACATTACCCCCCTAGACAAAATGATCCCTGGGCAGATCCCAGGATTTCTGGGATCCCCCTATTATGAACTAGCAACCATNATTGAAAAATGGGGTCCCCTGCGNGTTATGGGAAATATCTCCCCATTCCGCATGGCGGACTATTTTCANGGNCTAAGCAAAGATATACTAATTACAAAAGAACGGCAGTTAGCTGCCTCTACGGTGGCATGGCCACTGTTAAATGCTTTAAACCAGGCTGAAATGAGGGCCAATACCTTAGAAAATGAAAACCAGCTATTGNGAGACCGCACTGAGAAATTAGAGCAAGAACTTAGTATATTGACGGGGAAAAAAACAACTTTGCATTTTCCGATAGGNCAGGTCCGTAATATTTCAATAGATAATGACCAGATTCCTGAATCAACGGACCTGGTTGATCAGGAAAATAAAAATTCTAAATCGGATCTNGANGCTCCGCTTGCGACGGATCCCTTGGAGATCCGTCCTATTATAACTCAAAAAACAAAAAAGATACAAGATAGACCAGCAGGGGTGCCCCCTGATCAGTGGCCCCCTGCCCAAACTCACTTACATGTAACGGCCCGNCCATACACGGCAACNGAATTAATGGACCTGGTACAACGGTTCCGGCAGAAGCCNAGGGAAAGTGTACCAACTTGGCTATTAAGATTATGGGACTCGGGGGCAGAAAGTGTCGTGGTTAACGGGCCAGAAATATCTAAATTGGCCACCATGACTGTGCACCCTGCCCTTAGGCAGAGATTATACGCNGGCGTCCAATATACCAATGAAAACCATTCTATAATAGATTGGTTGATGGCGGCATGCCGTATGGTATGGCCNAATAAATCAGATATACCATTACATACAGGNTTGTGGTCCTCCATGGAGGACCTTCAAAATTACATTCGTGAACTGGGCATAAGAGAAGCAATATATGAAGACNCATTTGANAGCCCAGATATGGTNAGATTTTCAGCGGGNATGAGAGACTTGATCTTGCAGCAGGCCCCTTCCCATCTATATGGGACCTTAGTTTCTATACTGAACCCCCTGGTGGCCTCAGAGTCNGTGGTCCAACAGGCTGCCCAACTAGTGGCTGATCTGGGGGAGACAGAGCGCCTGCGGACCAGGCGCAATATTCGAACANTGGAAGAAGCAGAGGTCCTNCCAGTAACTAAAACTAGGAGGCCAGCCGTACGAACTCCTCAATCGGGACCCATACGGGTNTCCCGAAAGCAAATGTTTAATGACCTAATCCGGGCTGGGGTCCAATTTGCNAAAATTGATCGCCAGCCCAATCATGTCCTCCTCCAGCTNTGGAAACAGCTGAAGGACAATCAAAAATTTCAAAATTACCCCAAAAAACCTAGGGTAAGAATTATNGACAGANTACCAACGACAACATGGAACTTAGAAGATTTTATAGTCCCTAGTAGGAAAAAGAAGCCTCCTCAGGTGTCTCGGGCCACAATGCCCGAGCCACCNGAGGCAAAAGACTTAGCCATAGCACAGTTTATGGCGTGACAAGGGATGCTAGTCCCCCTAGGGCCTCCAGATGGGACCGGAGGCCCTATGTAGAATTGACGATTTTTTGGTCCCGAAAGAATATTCAGAGAGTTATGGCATTGGTTGACACAGGNGCGGAAACATCAATAATTTATGGAGATCCGACTAAATTCGATGGCGATAGAGTGATGATTGGTGGNTTTGGGGGACAGACCATTCCGGTCACCCAAACGTGGTTGAAACTGGGGGTTGGGCGTCTCCCACCCCGGGAGTATAAGGTGTCTATTGCCCCAGTCCAAGAGTACATCCTGGGCATAGATATTTTATGGGGTCTGGCTCTCCAGACGACTGTGGGAGAGTTCAGACTTCGACAAAGGTGCATTAGTGTCCGGGCGGTGCAGGCAATATTGAGAGGCCATGCGAAGCATGAGCCTATTTGCCTGCCGAAACCGCGCCGGATTACTAATGTNAGACAGTATAGACTCCCGGGTGGGCAAGATGAAATATCAAGAACGGTGCAGGAATTAGAAAAAGTNGGCATTATAAGACCTGCACATAGCCCATATAATTCCCCCATATGGCCAGTGCGAAAGTCGGATGGAACATGGAGAATGACGGTGGATTATAGAGAATTAAATAAGGTCACGCCGCCTATTCATGCAGCCGTACCCAATATTGCCTCCCTAATGGACACATTGAGTAGGGAGATAAAAACCTACCATTGTGTCCTAGATTTGGCAAATGCGTTCTTCAGTATTCCAATTGCTGAAGAATCGCAAGATCAGTTTGCGTTTACATGGGGAGGCAGGCAGTGGACCTTTCAGGTCCTGCCACAGGGGTACGTGCATTCGCCAACATATTGCCATAATCTAGTGGCGCGTGACCTGGCTAATTGGAGAAAACCTGATAATGTTAACTTGTATCATTATATTGATGATCTCCTGTTGACATCTGACTCACTGGAGGCGGTAGGACAGGCAGCAGATTCATTAACTACCTATCTGCAGGAAAGAGGATGGGCTATAAATCCTCAGAAGGTGCAAGGTCCGGGCCTGTCCGTAAAATTCCTGGGGGTAGTTTGGTCAGGAAAGACCAAAGTACTACCCAGTGCTGTAATAGATAAGGTTCAGGCATTCCCAGTCCCTACAACACCAAAGCAGCTGCAGGAGTTTTTAGGTATATTGGGATACTGGCGCTCCTTTATACCTCATTTAGCGCAGCTGCTGAGGCCACTGTACAGACTCACGAAAAAGGGGCAGCTATGGGACTGGGGGAGAACGGAACAGGACGCTTTCCAACAGGCAAAACTGGCAGTTAAACAAGCCCAGGCATTGGGTATATTTGATCCTACCCTCCCAGCCGAGTTGGACGTTCATGTCACTCAGGATGGCTTTGGCTGGGGCCTGTGGCAACGCCAGAGTTCTGTTCGGACCCCCATTGGATTCTGGTCTCAGGTCTGGCACGGAGCAGAAGAAAGATATAGTATGATTGAAAAACAGTTATTGGCTGCCTACTCCGCATTACAGGCGGTAGAGCCGATAACCCAAACGGCTGAAATCATAGTTAAGACCACCCTGCCGATTCAGGGGTGGGTGAAAGATCTGACCCACCTTCCTAAGACGGGGGTGGCCCAAGCACAAACGGTGGCACGATGGGTCGCCTATCTCAGCCAGAGGAGTAGTCTGTCTTCATCACCACTAAAAGAAGAACTTCAGAAGATCCTAGGCCCAGTGACGTATCACAGTGATGCACCAAAAGAAACATTGGTCGCTCCACCAGAGAAGAGTCCCGTTCAGGAGGGGAAATATCCTATTCCTGAAGATGCCTGGTACACAGATGGGTCCAGCAAGGGCAACCCGAGCAAGTGGAGAGCGATAGCATACCATCCCTCCACCGAGACAATCTGGTTTGACGAGGGGGATGGTCAGAGCAGCCAATGGGCAGAACTGCGAGCCGTGTGGATGGTTATAACCAAGGAACCCGGTGACGGTATCCTGAACATCTGCACAGATAGTTGGGCTGTGTACCGGGGGCTCACTCTTTGGATTGCACAGTGGGCCACCCAGGAATGGACTATCCACGCCCGACCAATCTGGGGCAAAGATATGTGGTTAGACATATGGAATGCAGTTAAACACAGGACTGTACGTGTCTACCACGTTTCTGGTCACCAACCCCTACAGTCACCGGGAAATGATGAAGCCGACACACTGGCCCGAGTTCGATGGATTGAGAATTCACCATCTGAGAACATCGCCCGCTGGTTACATCAGAAGCTACGGCATGCTGGACAAAAGACAATGTGGGCAGCTGCTAAAGCATGGGGGCTGCCCATACAGCTATCTGACATCGCCCAGGCATGCCGAGACTGCGACGCTTGCTCCAAGATGAGACCGAGATCGTTGCCCGAAACAACAGCCCATCTTGCTAGAGGACACAATCCTCTCCAGCGATGGCAGGTTGATTACATTGGGCCCCTCCCTCGGTCTGAGGGGGCGAGATATGCCCTGACCTGCGTCGACACTGCAAGTGGGCTACTGCAGGCCTATCCAGTACCGAAAGCAAACCAGGCATATACCATCAAGGCACTTACCAAACTGATGTCTGCCTACGGGACACCTCAAGTCATCGAGAGCGACCAAGGGACTCATTTTACTGGTGCAATGATACAACGCTGGGCAGAAGAAAACAACATTGAATGGCGATTCCACCTGCCATATAATCCGACGGGGGCAGGCCTCATTGAACGTTATAACGGTATTCTTAAGGCTGCCCTGAAGACAGACTCCCAGTCCCTGCAGGGGTGGACAAAGAGACTCTATGAAACCCTGCGGGACCTGAATGAAAGACCTNGAGACGGCAGACCCAGTGCCCTGAAAATGCTACAGACAACATGGGCCTCCCCGCTTAGGATCCAAATTACGGGCACTGATAATCAGGTAAGACCCCAGATTGGCAATGAAAATAATCTTCTGCTCCCTGCCCCTGAGAATCTAGANCCAGGTACCCATAGAATAAAATGGCCTTGGAAGGTGCAGGTAGGACCAAAGTGGTGTGGCCTACTTGCACCTTGGGGGAGATTATTGGAGGTGGGAGGCTCGGTAGTCCCTCCGGTAATAGGTACATGGCCTACGGACATTGTGGTCAACACTCCGGTCTTCATTGCTAAAGGGACCCCCATCATGTCCCTGTGGCAGATCAGGACACCCCCTTTGGTGCCTGATATAGTTATGCAGCCGCAGACATCTGGCCAGAAGGTATGGTACAGGCGGCCGGGGCATGCCCCAGTACAAGCCGAAGTGTTGACCCAGGATAGAAATACGGCCTGTATCTTGCCCTGGAGGGCAGACCTTCCCCTCCTGGTACCCCTGAAACATCTGTATTACTCCCCGTGAGTCTTTGAGCCTCTAGGATCACCGGAAGGAACGAAATGCCATCAAAGCGTTCCAGTGTTGCTGTGAGATCACGTGCGACACCCGGTGATGGTCTACATGGGACTGATGGAGCATAGGATGGACCTGCACCNCACGACTACATGCCTCCAGTAACACCATCGAGCACTGGCCCATGAAAGAACATGAACTTTCACCATACCGATCATCACTCGTCTTAAATTGTGTCAACATACATCGCGACGGGAAATTGTATAAGCGTCGCGATGTGTCGGATCTCTGTATTAGGGAAGACTCACCCTTTAGTTAACTCAATCATTGGTTCATGCCGTGAAGGGGTGGAG >GGERVL-A#LTR/ERVL Seen with GGLTR3A, -B1/3, -C, and -F1/2 LTRs. ORF1: 317-2677, ORF2: 2810-5863. The gag protein partially matches that of ERVL (44% similarity only), as well as that of MLT1H. The pol protein is 55% similar (36% identical) to that of ERVL in mesozoic mammals. From pos 686-1175 ORF1 contains a tandem repeat of a 21 bp unit AGAGAGAGTCTCCGAGCCGAG that slowly morphs into CGAGACACCCTCCAGTCCGAA, resulting in poly-QSERDTL string in the protein. GG000227, GG000232 (pars), GG000221, GG000003, GG000092, GG000091, GG000097, GG000098, GG000025 @erv @gallus TTCTTGGTGGAGAATGCGGGCAAAAGCTGCTTTTTAGCTTTTTAGAACGAATCTCTCTCTGCTCTCGGAGAGCTTCGTTGGGAAAGTTTATCTCTTTCGCAGGTGCTCACTGAAAACTTGACCTTGAAAGTCCAGGCGGACTGCCAATATTCTGGGATATTTTGTAAACTTTGAGCACTGCTATCTTGCTTCNGTAAAGAGAAAGGAAAAAAAAANGATTCTGCTTTCTCTTTTANACCNGTTTGCAGAGGGAGCTGCTAATTTTACAGAACTTGTGATTTTTAAGCAGGCTCCCAGTCTCTCCTTCGAATCCTTTATGNATTTTTTGAATGCTCATCTGATCACGTTGTTAATCTCCCTGAATGCACTGTTCGTCATTGTAATTATTTCACTCAGTATCTGTATTTATNATATTCTGAGGAAGCCTTCCCCAAAGCCAGAGAATACTGAGTGGCAGGGAGTGTGGAGAGGCTTGGGAGAGACTTTAGAGAGATGGACATCCTCGGTGTCATGGAACTTTACTCCTGAACACCTGAAAGATCCTGAGAGCCTAAACAGATATTTGAGACAGGGATGTTGTGGCTCAGGCAGATCTGAGGAGGCACAAATGATTTGGGGCCTGGCTAATGCTTATCGGGCCTTATTCAATACTATCCCAGAGAGGGAGAGAGTTTCTGAAATTGAGAGAGAGAGTCTCCGNGCCGAAAGAGAGNGTCTCNGAGCTGAGAGAGAGAGTCTCCAAGCCGAGAAAGAGAATCTCCAGNCTGAGAGAGAGAGTCTCCGAGCCGAGAGGGAGAGTCTCCGGGCTGAGAGAGAGANTCTCCAAGCCGAGAGAGAGGACCTCCAATCTGAGCGAGANAGTCTCCGGNCCGAGCGAGANANCCTCCAATCTGAGNGAGACACCCTCCAATCCGAGAGAGACACCCTCCAATCCGAGCGAGACNNCCTCCAATCCGAGCGAGACGNCCTCCGATCTGAGCGAGACACCCTCCAGTCCGAGCGAGACACCCTCCAATCCGAGCGAGACAGCCTCCAANCCGAGCGAGACGCCCTCCAATCCGAACGAGACAGCCTCCAATCCGAACGAGACANCCTCCAATCCGAACGAGACACCCTCCAATCCGAACGAGACACCCTCCAGTCCGAGNGGGACACCCTCCAGTCCGAACGGGACGTACTCCGAACCGAGCGAGATGCCCTCCAGCACGCAAAATTCAGTCTCCAAACTGAANTAACCAAAATTCAGTCTCATCGAGNCATNCTCNAATCTGAACTAAACACCCTCATAATCGAACAAGACAGACTCCGAGCCGAGCTGGAGAGTGAGAGCATCGGAACTGACCAACCTGATCAACCGCAGGAGGCACCAGAATCGATGTCAGTTGCCCCTGTAAGAGGACGGAAAACGAAACGAATCTCAACTCACTTAGAACAGAAGAAAGAGGAGGAGGAGAAAGTAGAGGAAGCAGACACTGTAAGAGAAGAGGAGGAAAGAGGTCCAGAGGAGCGGCTCCAAGATCCAGGGGAAGCGCCCCTGAGTCCAGGGGAGGGGCCCTCAATAAGATCGCGGTCACCAACGCCCAGGAGGGCAACAAGAAGTCCTGAAAGAGTAGGAGGTGAGCAAGACATCGTNACCATTACTGATCGATCTCTGAAAATGAATGAAATTCGAGGTCTGAGAAAAGACTTTTCACGCCACCCAAATGAGCCTATTGTCACCTGGTTACTTCGATGTTGGGACAATGGGGCCAACAGTGTGTNGCTAGATAGTAGAGAAGCTCGCCAACTGGGTGGCATTGCTAGGGACTCAGCCATTGACAGAGGTATTAGTACATGCCAGAACGAGGCCTTCACCCTCTGGAAGCGGATGCTGTTAGCCGTAAAAGAAAGATACCCCTTCAAAGATGATCTGATGCCTGAGAAAAAGAAATGGACTGATATGGAAAAAGGCATCCGTTATTTGAGAGAATGCGCCGTGGTGGAAATGTTACATGGCCCCACTTTCATTCCTGACGAGCCAGACCAAGAGCATGATCCTGAGAGAGTCAGGTGTACACCAAATATGTGGCGTATATTCACAAAGACTGCACCAGAAAGGTATGCCAGTACATTTGCAGCAATGTATGGCAGAGGGGAAAGAAGACCCCTTATAAATGAACTGATTAATAAACTTCAAGACTTTGAGTTACATTTAACCCCTCTACGAGCTTGTGTTTCAGCCATTACAAAAGTAGCTGAAAAACTGGACAGAATGGAGAGCAANCAAGAAGATATAATAGACGAACTGTCTACCGTGCTTNATGCTGATGGATCCATGGTGGTATCAGATACATCTGACGGGGACCAGGATTCCCAAAACAGCCTACTGGAGGGGCTGATCAAATTGGTTTCCTCCCAACCTGCATCATCCAACGTCTCAGCTATCAAAAGAAGACGTCCTCCTGCTCGAGCAAGTGACAACAGTAAGACTATGTCGCGTNTTGCCTTGTGGCGTTACCTACGTGACCATGGAGAAGATATGAAGAAGTGGCATAAAAAACCCACTCCTGCACTTCAAGCACGGGTAAAAGAATTACAAGACAGATCAACCACCAAGGTGAACTCCTCCAAAAAGGTGATTGCTCCAGTTGCTGCGGGACACGGCAATAGCCGTAAGAACGACAGAGGTAACAAATAGAGGGGCCCTGCCCCCAGCCAGGGGGGGGAAAGGGATAATAGAGTGTATTGGACTGTGTGGATTAGATGGCCTGGCACATCAGAACCACAGAAATATAAGGCACTGGTGGACACTGGTGCACAGTGCACTCTAATGCCCTCGAGTCACCAAGGGACAGAATCAATTTATATTCATGGGGTGACTGGGGGTTCCCAAGAGTTGACTATGTTGGAGGCCGAAATAAGCCTCACTGGTAAAGACTGGCAAAAGCACCCTATTGTGACTGGCCCAGGGGCTCCATGTATACTTGGTATTGATTACCTCAGAAGGGGATATTTTAAGGATCCCAAGGGGTATCGATGGGCCTTTGGAATAGCTGCTGTAGACACAGAAGGTGTTAAGCAGTTGTCTGTNTTGCCTGGCCTATCAGAAGATCCGTCTGTTGTGGGGTTGCTACGAGTGAAAGAGCAACAGGTACCGATTGCTACAAAAACGGTGCACAGACGGCAGTACCGCACCAACAGGGATTCCTTGCTCCCCATTCATAAGTTGATTCGTCAACTAGAGAGTCAGGGAGTGATCAGCAAAACTCACTCACCTTTTAACAGCCCCATATGGCCAGTGCGTAAAGCCAGTGGAGAATGGAGGCTGACGGTAGACTACCGCGGCCTGAATGAAGTCACACCCCCACTGAGTGCTGCTGTGCCGGACATGCTAGAACTCCAGTATGAACTGGAGTCAAAAGCAGCCAAGTGGTATGCCACCACTGACATTGCTAATGCCTTCTTTTCCATTCCTTTGGCCACGGAATGTAGGCCACAGTTTGCTTTCACCTGGAGGGGCGTTCAGTATACCTGGAATCGTTTGCCCCAGGGGTGGAAACACAGCCCAACNATTTGCCATGGGTTGATCCAAGCTGCACTGGAACAGGGNGGTGCTCCTGAGCACTTACAGTACATTGATGACATTATTGTGTGGGGCAACACAGCAAGGGAAGTTTTTGAGAAAGGAGAGCAAATAATCCAGATCCTTCTGCGTGCTGGTTTCGCTATTAAGCGAAGCAAAGTGAAAGGACCTGCNCAGGAGATTCAGTTCCTAGGTATAAAGTGGCAAGATGGACGTCGTCACATCCCAACGGATGTGGTCGACAAAATCACTGCCATGTCTCCGCCCACTAATAAGAAAGAGACACAGTCTTTTCTGGGCGTAGTGGGCTTTTGGAGAATGCATGTTCCAAACTATAGCCTCATTGTAAGCCCCCTTTATCAGGTGACGCGGAAGAAGAATGATTTTGCGTGGGGTCCTGAACAGCAGCAGGCTTTTGAGCAGATTAAACAGGAGATAGCCCGTGCCGTGGCCCTGGGGCCAGTACGGACGGGACAGGATGTAAAGAACATCCTCTACACTGCTGCTGGAGAGAAAGGTCCCACCTGGAGTTTGTGGCAAAGAGCCTCAGGAGAGACCCGAGGCCGACCCCTGGGATTCTGGAGTCGAGCATACAGGGGGTCTGAAGAGCGCTACACTCCAACTGAAAAGGAGATCTTAGCCGCGTATGAGGGGGTTCGGGCTGCTTCCGAAGTAGTCGGTACTGAAACGCAGCTCCTTCTGGCACCTCGACTGCCAGTGCTGAACTGGATGTTCAAGGGAAAGGTTCCCTCCACCCATCATGCTACTGATGCCACTTGGAGCAAGTGGATTGCGCTGATTACGCAACGAGCTCGGATGGGGAACCTCAGTCGTCCAGGAATCTTAGAGGTGATCATGGACTGGCCTGAAGGTAAAAAGTTTGGAACATCACCAGGAGAAGAGGTATCACGTGCTAAAGAGGCCCCACCATACAATGAACTACCAGAAAATGAAAAGAAATATGCCCTGTTCACAGATGGATCGTGTCGTATTGTGGGGAAGCATCGCAGATGGAAAGCTGCTGTGTGGAGCCCCACGCGACAAGTTGCAGAGGCCACTGAAGGNAAAGGAGAATCAAGCCAGTTTGCAGAGGTAAAGGCTGTCCAACTGGCCTTAGATGTTGCTGAACGGGAGAGGTGGCCAGTGCTTTATCTTTATACTGACTCATGGATGGTGGCGAATGCCTTATGGGGGTGGTTACAGCAGTGGGAGCAAAATAACTGGCAACGGAGGGGTAAACCTATTTGGGCTGCTGAACTGTGGAAAGACATTGCTGCCCGAATAAAGAATATGGTTGTAAAGGTGCGTCACGTAGATGCTCATGTGCCCAAGAGTCGGGCTACTGAAGAACAGAAAAATAACCATCAGGTAGATCGGGCTGCCAAAATTGAGGTGGCTCAAATAGACTTGGACTGGCAGAACAAGGGTGAATTATTTCTAGCTCGGTGGGCCCATGAGACCTCGGGCCATCAAGGAAGAGATGCAACATATAAGTGGGCTAGAGACCGAGGGGTGGACTTAACTATGGATGCTATTGCACAAGTTATTCATGACTGTGAAACATGTGCCATAATTAAACAAGCCAAGAGGATGAAACCTCTCTGGGAGGAAGGGCGATGGCAAAAGTATAAATATGGGGAGGCGTGGCAGATTGACTATATCACCTTGCCACGATCTCGCAATGGTAAGCGTTATGTGCTCACCATGGTGGAAGCAACCACTGGGTGGCTTGAAACATATGCAGTACCCCATGCTACCGCCAGAAACACCATATTAGGTCTGGAGAAACAAGTCCTGTGGCGACATGGCACCCCAGAAAGAATTGAATCAGATAATGGGACTCATTTCAAAAATTCTCTTATAAATACTTGGGCCAAAGAACATGGCATTGAATGGATTTATCATATTCCCTATCATGCACCAGCTTCTGGTAAAATTGAACGATACAATGGGTTGTTAAAAACTATGCTGAAAGCAATGGGTGGTGGAACATTTAAGCACTGGGAGAAGCATCTGGCAGAAGCCACCTGGTTGGTCAACACTAGAGGATCTATCAATCGTGATGGTCCTACCCAATCCAGCTCCCTACATACTGTAGAGGGAGATAAGGTCCCTGTAGTACATGTAAAGAGCATGTTGGGAAAAGCAGTTTGGGTCCTTCCAGCCTCTGGAAAGGGCAAACCTCTCCGTGGAACTGTTTTTGCCCAGGGACCTGGGTCCACTTGGTGGGTGATGCAGAAAGATGGGGATGTTCAATGTGTACCACAAGGGAATTTGATGTTGGGGGAGTGCAGTCAGTAGTTCTATGTATATGTATTAAGCATGATATAATGATGTAGAATAAGGGGTGGAA >GGERVL-B#LTR/ERVL Seen with GGLTR3E1-3, and -F2 LTRs. ORF1 533-2110. ORF2 2243-5296. GG000006, GG000175, GG000210, GG000289, GG000413 @erv @gallus GTTTTTGGTGGAGAATGCGGGCAATCTGAAGCTTTTAACGTTAGCAGAGAAAAAAAAGGATTTCTTTAAGCCGGAGACTGCGAGACTGCAAGGCATTGCTAGTGTGACCTTCATAGATTAGATTATAGTCTGGGCAGTCTGCCAAACTCCGGACACTGTACCGAGTGGGTTTTTTTGTTTTGTTTTTGTTTTTCCCCCCTTTTAGCAGCTACCAGCTATGAGTCTGCTCTTTATTGTAGGAGCGCTGTATAAGGGATTAAAAGCCATCATGTTCTTTGGAANTTACTGGCCTATAATTAACATCATGATTTCTTGCTGTGGAATTGTGTTCATATATAACCAAATAAGGGCACTGATGGAGACACCTGCCTGGTACCTTTATGCAATGTGGTATGATTTGAATTTTGACACTACATCCCAGATGGAATAGCTAATTTTACAAACAACACGATGTTTCAAACCGGTTTCCAGGCTTTCTTCTCAGTTTGTCACACGTTTTTCGAATGCCGAGCTAGTGCTCATACTCGTGTGCATGTTATCAATCTCCCTGAATGTATTCCTCTCCATTCGTGCTANGTGGAAGAAGTCTCCTCCAAAACCAGAGAATGCTGACTGGCAGGGAATATGGAGAGGTTTAGGAAAAATCTTAGAAGCGTGGGGACCCGCAATGTCATGGGATTTCACTCTTGAACACCTGTGGGATCCCGAGAAACTAAGCCAGCATTTGAGTCAGGGATGGTGCGGCTTAGATAGATCTAAGGAGGTACGGCTTATCTGGGGCTTGGCTTGTGCCTACCGCGCTCTATATAATACTATTCTGGAGAGAGAGAGTTTCCGAGCTGAGGTTCAAGCCAAAGGGGGAAATCTCCAAGTCAAATCTGATCAGTCACAGGAGACACCAGTAACAGTGTCAGTTGCCCCTGTGGAAGGCAAGAAATGGAAGCGGGTGTCCTCGCGTCTAGAACGGAAAAAAGAAGAAGAAGAAGCGGAGGAGGAGGTAGAGGAAGATCCAGGCGAGGGGNCCTCCTCAGAACCAAGAAAGGCAAAAGCAAAAACCAAGAGACACGGAGAGGAGAGTGATGAAGAGGAAGTCTCTATTACTGTTCGTCGACCTCTGAAGATGACTGAAATCCAAGGCTCAAGAAAGGAGTTTACACGGCGCCCGAACGAAACTCTTGTCACCTGGTTGCTTCGCTGTTGGGACGGCGGGGCCAGTAGCTTGTCTCTAGATGGTAACGAAGCCCGCCAACTAGGAGGCATTGCCAGAGACNNATCTATTGACAGAGGGATTAGTAGATGTTTGGATGGAGCCGCNACCCTCTGGGAACGAATGTTAGTAGCCGTGAGGGAAAGGTATCCCTNCAAAGACAGTCTGAAGCCTGCGATGAAAAAGTGGGATACAATTGAAAAAGGTATCCAGTATTTGAGGGAAATAGCCGTGGTGGAAATGTTGTATGACCCTAATTTTGTTCCTAACGATCCACGCCAAGACCATGATCCNGAGAGAGTGAGGACAACGCCTGATATATGGCAGAAACTCACAAGAGCAGCACCAGANAGATACGCCCCCACACTAGCAGCAACGTTCGACAGATACGAGGACCAACAGAGAAGACCCCTAGTTTTCGAATTGATTCTTACACTTCAAAACTATGAACAACATCTACCCCCAACTCACGCTTCCATTTCAGCCGTCTCAGAANTAGCAAACAGACTGGATGAAGTGCAAGAGCAGGTGTCTCTATTGATTAATCGTGACGAACCCGTAGTAGTATCAGAAACGTTTGATGAAGATCAGGATAAGCAAAGGGGCCTAATGAAGGAACTGATCAAACTAATGAAAATCCAATTAATTAAAGGNGATGGACCCCCCTCCTCACCTGTATCATCAAAAATCTCAGCTATTGAAGGCAAACGCTTTCCTGCTCAAGCGAGNAACAATAGTAAGACTACATCGCGTATTGCCTTGTGGCGTTACCTCCGTGACCATGGAGAAGACATGAGGAAGTGGCATGACCAAGCTACTCCTGTACTGCGAGCACGGGTGAGAGAATTACAGAACAGATCAACCACCAGTGTAGTTGCTCCAGTTACCACAGGTAATGAATAGAGGGGCCCTGCCCTCAGTCAGGGGGGGGAGAGGGATAACAGAGTTTATTGGACTGTGTGGATCCGATGGCCTGGCACATCAGAACCACAGAAATATAAGGCACTGGTGGATACCGGTGCACAGTGCACTCTAATGCCCTCGAGTCATGAAGGGACAGAATCAATCCATATTTCTGGAGTGACTGGGGGCTCTCAAGAATTGACTGTGTTGGAGGCCGAAATAAGCCTCACTGGTAAAGACTGGCAAAAACACCCTATTGTGACTGGCCCAGGGGCTCCATGCATACTTGGTATCGATTACCTCAGAAGGGGGCATTTCAAGGATCCTAAGGGGTATCGATGGGCCTTTGGAATAGCTGCTGTAGATACAGACAACATTAAGCAGCTGTCTGTTTTGCCTGGCCTGTCAGAAGATCCGTCTGCTGTGGGGTTGCTACGAGTAAAAGAGCAGCAGGTACCGATTGCCACAAAAACAGTGCACAGACGGCAGTACCGCACCAACAGGGATTCCTTGCTCCCCATTCATAAGTTGATTCGTCAACTAGAGAGTCAGGGAGTGATCAGCAGAACTCACTCACCTTTTAACAGCCCCATATGGCCAGTGCGTAAAGCCAGTGGAGAATGGAGGCTGACGGTAGACTACCGTGGCCTGAATGAAGTCACACCCCCGCTGAGTGCTGCTGTGCCGGACATGCTAGAACTCCAATATGAACTGGAGTCAAAAGCAGCCAAGTGGTATGCCACCACTGACATTGCTAATGCCTTCTTTTCCATTCCTCTGGCCACAGAATGCAGGCCGCAATTTGCCTTCACCTGGAGGGGCGTTCAGTATACTTGGAACCGTTTGCCCCAGGGGTGGAAACACAGCCCAACCATTTGCCATGGGTTGATCCAAACTGTATTGGAACAGGGCAGTGCTCCTGAGCACCTGCAATACATTGATGATATTGTTGTGTGGGGCGATACAGCAGAGGAAGTTTTTGAGAAAGGAGAGCAAATAATCCAAATTCTTCTGCAAGCTGGTTTTGCTATTAAGCGAAGCAAAGTGAAAGGACCTGCCCAGGAGATTCAGTTCCTAGGTATAAAGTGGCAAGATGGGCGTCGTCACATCCCAGCAGATGTGATCGACAAAATCACTGCCATGTCTCCGCCCACTAATAAGAAAGAGACACAATCTTTTCTGGGTGTAGTGGGCTTTTGGAGAATGCATGTTCCAAACTACAGCCTCATTGTAAGCCCCCTNTATCAGGTGACGCGGAAGAAGAATGATTTTACGTGGGGTCCTGAACAGCAGCAGGCTTTTGAGCAGATTAAACAGGAGATAGCCCGTGCCGTGGCCCTGGGGCCAGTACGGACGGGACAGGATGTAAAGAACATCCTCTACACTGCTGCTGGAGAGAAAGGTCCCACCTGGAGTTTGTGGCAAAGAGCCTCAGGAGAGACCCGAGGCCGACCCCTGGGATTCTGGAGTCGAGCATACAGGGGGTCTGAAGAGTGCTACACTCCAACTGAGAAGGAGATCTTAGCCGCGTATGAGGGGGTTCGGGCTGCTTCCGAAGTAGTCGGTACTGAAACGCAGCTCCTCCTGGCACCTCGACTGCCAGTGCTGAACTGGATGTTCAAAGGAAAGGTTCCCTCCACCCATCATGCTACTGATGCCACTTGGAGCAAGTGGATTGCACTGATTACGCAACGAGCTCGGATGGGGAACCTCAGTCGTCCAGGAATCTTAGAGGTGATCATGGACTGGCCTGAAGGTAAAAAGTTTGGAACATCACCAGGAGAAGAGGTATCACGTGCTAAAGAGGCCCCACCATACAATGAACTACCAGAAAATGAAAAGAAATATGCCCTGTTCACNGATGGATCGTGTCGTATTGTGGGGAAGCATCGCAGATGGAAAGCTGCTGTGTGGAGCCCCACACGACAAGTTGCAGAGGCCACTGAAGGAAAAGGAGAATCAAGCCAATTTGCAGAGGTAAAGGCTGTCCAGCTGGCCTTAGATGTTGCTGAACGGGAGAGGTGGCCAATGCTTTATCTTTATACTGACTCATGGATGGTGGCGAATGCCTTATGGGGGTGGTTACAGCAGTGGGAGCAAAACAACTGGCAACGGAGGGGTAAACCTATTTGGGCTGCTGAACTGTGGAAAGACATTGCTGCCCGAATAAAGAATATGGTTGTAAAGGTGCGCCACGTAGATGCTCATGTGCCCAAGAGTCGGGCTACTGAAGAACAGCAAAATAACCATCAGGTAGATCGAGCTGCCAGAATTGAGGTGGCTCAAATAGACTTGGACTGGCAGAACAAGGGTGAATTATTTCTAGCTCGGTGGGCCCATGAGACCTCGGGCCATCAAGGAAGAGATGCAACATATAAGTGGGCTAGAGACCGAGGGGTGGACTTAACTATGGATGCTATTGCACAGGTTATTCATGACTGTGAAACACGCGCCATAATTAAACAAGCCAAGAGGATGAAACCTCTCTGGGAGGAAGGGCGATGGCAAAAGTATAAATATGGGGAGGCGTGGCAGGTTGACTATATCACCTTGCCACGANCTCGCAATGGTAAGCGTTATGTGCTTACCATGGTGGAGGCGACCACTGGGTGGCTTGAAACATATGCAGTACCCCATGCTACCGCCCGAAACACCATATTAGGTCTGGAGAAACAAGTCCTGTGGCGACATGGCACCCCAGAAAGAATTGAGTCAGATAATGGGACTCATTTCAAAAATTCTCTTGTAAATACTTGGGCCAAAGANCATGGCATTGAGTGGATTTATCATATCCCCTATCATGCACCAGCCTCTGGTAAGATCGAACGATACAATGGGTTGTTAAAAACTATGCTGAAAGCAATGGGTGGTGGAACATTTAAGCACTGGGAGAAGCATTTGGCAGAAGCCACCTGGTTGGTCAACACTAGAGGATCNATCAATCGCGATGGTCCTACCCAATCCAGCTCCCTACATACTGTAGAGGGAGATAAGGTCCCTGTAGTACACGTAAAGAGCATGTTGGGAAAAGCGGTTTGGGTCCTTCCAGCTTNTGGAAAGGGCAAACCTCTCCGTGGAACTGTTTTTGCCCAGGGACCTGGGTCCACTTGGTGGGTGATGCAGAAAAATGGGGATGTTCAGTGTGTACCACAAGGGAATTTGATGCTGGGGGAGTGCAGTCAGTAATTCCATGTATATATATGTGTATATGTGTGCGTGTGTAATGCATGTTAATTATTGTTTGTTTGTATATATATATTAAGCATGATGTAGTGATGTGGAATAAGGGGTGGAA >GGERVL-C#LTR/ERVL Seen with GGLTR3B2/3, -C2 and -G1/2 LTRs. ORF1 15-1841, ORF2 1973-4843. GG000098, GG000319, GG000428 @erv @gallus ATTATTGGTGGAGAATGCGGGCAGCTATGGATCTCTACTTCATTTTAAGAGCATTGTATAGAGGACTAAGGACCATTATGTTCCTTGGAACATATTGGTTCCTTTTTAAGTTCATCATGTTCAGTGTCGGAGTTGCATATACGTATAGCCAATTAAGGGCACTGATGGAGATACCTGCCTGGTTCCTATACATCCCGGCTAATTTAACAGACAATATGATGTTTGGACTGGTTTCCAGGTGCTCTTCTCAGTTCCTTATGCATGTTCGGGATGCCAGCTTAGGTACTGTGCTATCAGTCTCTCTGAATGTATTCTCTGCAATAGTATTTTACATTATGTGGAGGAAGCTTTCCCCAAAACCAGAGAATGTTGAGTGGCAGGGAATATGGAGAGGTTTAGGAAAGAGATTAGAAGCGTGGGGACCCCCGGTGTCATGGGATTTCACTCTTGAACACCTGTGGGATCCTGAGAAACTAAGCGAGTATTTGAGTAAGGGATGGTGCAGCTCAGAAAGATCTGAGGAGGAACGGCTTATTTGGGGCTTGGCTTGTGCTTACCGAGCTCTATATAATACTATTCTGGAGAGAGAGAGTTTCCAAACTGAGATCCGAACCAAAGGGGGAAGCCTCCAAGTCAAACCCGACCAATCACAGGAGGCACCAGTATCAATGTCAGTTGCCCCTGTGGAAGGNCAGAAATGGAAACGGGTGTCCTCGCGTCTAGAACGGAAAGAAGAAGCGGAGGAAGTAGAGGAAGATCCAGGCGAGGGGCCCTCCCCAAAACCACCATCACCGAGAAAGGCAACNGAGAAAANTAAGAGACATGGAGAGGAGAGTGAGGAGGAGGGAGTCACTGTTACCACTATTCGTCGACCCCTGAAAATGACTGAAATCCAAGGCTCAAGAAAGGAGTTTATACGGCACCCGAACGAAACTGTTGTCACCTGGTTGCTTCGGTGTTGGGACAACGGGGCCAGTAGCGTGTCCCTAGATGGTAACGAAGCTCGCCAACTAGGAAACATTGCCNGAGACTCAGCTATTGACAGAGGGATTAGTAGATGTCTGGACGGAGTCGCCACCCTCTGGGAACGAATGTTATTAGCTGTGAAGGAAAGATATCCCTTCAAAGACGATCTGGAGCCTGAGATGAGAAAGTGGAATACTGTTGAGAAAGGCATCCAGTATTTGAGAGAAACAGCCGTGGTGGAAATGCTGTATGATCCCACGTTTGTTCCTAACGATCCACGCCAGGACCATGATCCTGAGAGAGTTAGGAGTACGCCCGATATATGGCGGAAGCTCACAAGAACAGCACCGGAAAGGTACGCCAGTACACTAGTAGTAACGTTCGATAGATACGAGGACCNACANAGAAGACCCCCAGTTTTTGAACTGATTCTTACACTTCAAAACTTTGAACAAAAATTACCNCCATCCCATGCTTCCATCTCAGCCATCTCCCAAGTGACAGAAAGACTAGATAAAGTGGAGAAGAAACAGGACGGCATGCTGGAGGAATTGTCTCTAGTGATTAATCGTGATGAACCCGTGGCAGTATCAGAAACACCCGATGAAGACCAGGATGATCAAAAGAGTCTGCTGAAGGAGCTGATCAAACTGATTAAAGTCTCAGCTATCAAAGGCAAACGCCTCCCTGCTCGAGCAAATGACAGCAGTAAATCTATGTCGCGTGCTGCCCTGTGGAGCTACTTACGTGAGCATGGAGAAGACATGAAGAAGTGGCATAAAAAACCCACTCCTGCACTACGAGCACGGGTGAGAGAATTACAAAACAGATCAACCACCACTGAAATTGCTCCCGTTACTGCAGGTAACNAATAGAGGGGCCCTGCCCTCAGTCGGGGGGGGAAAGGGATAATAGAGTGTATTGGACTGTGTGGATTCGATGGCCTGGCACATCAGAACCACAGGAATATAAGGCACTGGTGGACACCGGTGCCCAGTGCACTCTGATGCCCTCGAGTTATAAAGGGACAGAATCGATTTATATTTCTGGAGTGACTGGGGGCTCTCAGGAATTGTCTGTGTTGGAGGCAGAAATAAGCCTCACCGGTAAAGACTGGCAGAAGCATCCTATAGTGACTGGACAGGGGGCTCCATGCATACTTGGTATNGATTATCTCAGAAGGGGGCATTTCAAGGATCCCAAGGGATACCGATGGGCTTTTGGAATAGCTGCTGTAGATACAGACAACGTTAAGCAGCTGTCTGTCTTGCCTGGCCTGTCAGAAGACCCGTCTGTTGTGGGGTTACTACAGGTAAAAGAGCAGCAGGTACCAATTGCTACAAAAACGGTGCACAGACGGCAGTACCGCACCAACAGGGATTCCTTGCTCCCCATTCATAAGCTGATTCGTCAGCTAGAGAGTCAGGGAGTGATCAGCAAAACCCACTCACCTTTTAACAGCCCCATATGGCCGGTGCGTAAAGCCAGTGGAGAATGGAGGCTGACGGTAGACTACCGTGGCCTGAATGAAGTCACACCCCCACTGAGCGCTGCTGTGCCGGACATGTTAGAACTCCAGTATGAACTGGAGTCGAAAGCAGCCAAATGGTATGCCACCACTGACATTGCCAATGCATTCTTTTCCATTCCTTTGGCCACAGAATGCAGGCCACAGTTTGCTTTCACCTGGAGGGGCGTTCAGTACACCTGGAACCGTTTGCCCCAGGGGTGGAAACACAGCCCAACCATTTGCCATGGGTTGATCCAAACCGCACTGGAACAGGGCGGTGCTCCCGAGCACCTGCAGTACATTGATGACATTGTTGTGTGGGGCGATACAGCAGAGGAAGTTTTTAAGAAAGGAGAGCAAATAATCCAAATTCTTCTGCGTGCTGGTTTCGCTATTAAGCGAAACAAAGTGAAAGGACCTGCCCAGGAAATTCAGTTCCTAGGAGTAAAATGGCAAGATGGGCGTCGTCACATCCCAGNAGATGTGATCAACAAAATCACCGCTATGTCTCCACCCACTAGCAAGAAAGAGACACAGTCTTTTCTGGGTGTAGTGGGCTTTTGGAGAATGCACGTTCCAAACTACAGCCTCATTGTAAGCCCCCTCTATCAGGTGACGCGGAAGAAGAATAATTTTGCGTGGGGTCCTGAGCAGCAGCAGGCTTTTGAGCAGATTAAACAGGAGATAGCCCGTGCCGTGGCCCTGGGGCCAGTACGGACGGGACAGGATGTAAAGAACATCCTCTACACTGCTGCTGGAGAGAAAGGTCCCACTTGGAGTCTGTGGCAAAGAGCCTCAGGAGAGACCCGAGGCCGACCCCTGGGATTCTGGAGTCGAGCGTACAGGGGGTCTGAAGAGTGCTACACTCCAACTGAAAAGGAGATCTTAGCCGCGTATGAGGGGGTTCGGGCTGCTTCTGAAGTAATCGGTACTGAAACGCAGCTCCTTCTAGCACCTCGACTGCCAGTGCTGAACTGGATGTTCAAGGGAAAGGTTCCCTCCACCCATCATGCTACTGATGCCACTTGGAGTAAGTGGATTGCGCTGATTACGCAACGAGCTCGGATGGGGAACCTCAGCCGTCCAGGAATCCTAGAGGTGATCATGGACTGGCCTGAAGGCAAAAAGTTTGGAACATCACCAGCAGAAGAGGTATCGCGTGCTAAAGAGGCCCCACCATACAATGAACTACCAGAAAATGAAAAGAAATATGCCCTGTTCACAGATGGATCGTGTCGTATTGTGGGGAAGCATCGCAGATGGAAAGCTGCTGTGTGGAGCCCCACACGACAAGTTGCAGAGGCCACTGAAGGTAAAGGAGAATCAAGCCAGTTCGCAGAGGTAAAGGCTGTCCAGCTGGCCTTAGATGTTGCTGAACGGGAGAGGTGGCCAATGCTTTATCTTTATACTGACTCATGGATGGTGGCAAATGCCTTATGGGGGTGGTTACAGCAGTGGGAGCAAAACAACTGGCAANGGAGGGGTAAACCTATTTGGGCTGCTGAACTGTGGAAAGACATTGCTGCCCGAATAAAGAATATGGTTGTAAAGGTGCGCCATGTAGATGCTCATGTGCCCAAGAGTCGGGCTACTGAAGAACAACAAAATAACCATCAGGTAGATCGAGCTGCCAGAATTGAGGTGGCTCAAATAGACTTGGACTGGCAGAACAAGGGTGAATTATTTCTAGCTCGGTGGGCCCATGAGACCTCGGGCCATCAAGGAAGAGATGCAACATATAAGTGGGCTAGAGACCGAGGGGTGGACTTAACTATGGACGCTATTGCACAGGTTATTCATGACTGTGANACATGCGCCACAATTAAACAAGCCAAGAGGATGAAACCTCTCTGGGGGGAAGGGCGATGGCAAAAGTATAAATATGGGGAGGCGTGGCAGGTTGATTATATCACCTTGCCACGATCTCGCAATGGTAAGCGTTATGTGCTTACCATGGTGGAGGCAACCACTGGGTGGCTTGAAACATATGCAGTACCCCATGCTACCGCCCGAAACACCATATTAGGTCTCGAGAAACAAGTCCTGTGGCGACATGGCACTCCAGAAAGAACTGAGTCAGATAATGGGACTCATTTCAAAAATTCTCTTGTAAATACTTGGGCCAAAGATCATGGCATTGAGTGGATTTATCATATCCCCTATCATGCACCAGCTTCTGGTAAAATTGAACGATACAATGGGTTGTTAAAAACCATGTTGAAAGCAATGGGTGGCGGAACATTTAAGCACTGGGAGAAGCATTTGGCAGAAGCCACCTGGTTGGTCAACACTCGAGGATCTATCAATCGTGATGGTCCTGCCCATCCAGCTCCCTACATACTGTNAAGGGAGATAAGGTCCCTGTAGTACATGTAAAGAACATGTTGGGAAAAGCGGTTTGGGTCCTTCCAGCTTCTGGGAAGGGCAAACCTCTCCGTGGAACTGTTTTTGCCCAGGGACCTGGGTCCACTTGGTGGGTGATGCAGAAAAATGGGGATGTTCAATGTGTACCACAAGGGAATTTGATGCTGGGGGAGTGCAGTCAGTAATTCCATGTATATATATATGTATATGTGTGTGTGTGTTTAATGCATGTTAATTATNGTTTGTTTGTATATATATATTAAGCATGATGTAGTGATGTAGAATAAGGGGTGGAA >GGLTR3A#LTR/ERVL GG000001 5 bp TDS 3% subst level @cut @general @gallus TGTCATGGTTTTATGATTTTTGGTTATCAGTATTCCACATCACAACATCATGCAGTGTACTGGGAGTTAAAGAGCAAATGCTTTAGTTCCGGGTACCTGTCTGGAAGAGAAGAAGAACTACGTTCCCCAAGAGCCTTTTCGAGTACTGTTATCATTCCTGCTCAAGGGAACAGATATAAGGGCGCAGGTCATCTGACTCGCCCCTCTTCTCGTCTCGCCGTGTTCCCTGTCGGATCGGCTCGCTACTGCTGCGCCCGACTGCACGCAAGGCTTCAGTATTAGCGTAAGGCCTTTGGCTCTCGGACAATCTTTCTCTCAATTATTGTTGATTTATATTGTATTATAGTGTGTTATCTTACATTCCGATACTATATTTAGTAAATTAGTTTGTTTCTCCTCAGATCGTTGCCGCTGTTTTTAATTATTTTGGGGTCCCCTGTTTCCCTTCCTGGAGGCGCGGATTTTGCGAAATCCCTCCGCCCCACTAGTCGCGGAACCGGGCCGGACCAGCCCTTAAACCGTCGACA >GGLTR3B1#LTR/ERVL GG000014 5 bp dups 8% subst @cut @general @gallus TGTCATGGTTTTATGATTTTTGGTTACTGGTATTCCACATCATAACATCATGTAGTGCACTGGGAGTTAAAGTGTTAATGCTCCAGTTCCGGGCACCTGTCCGGAAGAGAAGAAGAACTACATACCCCAGGGGGCTTTGCGGTCAGAGAGGAGATATAACCTCTGGCAAAGTCACCTGATGTCCCTTTCTTCCCTCGGCTCTCCTCCCTGTTGCTCGTCCCGACCGCACGCATCGCCTCAGCACTACTGTAAGGCCTACAGCTTTCAGATACTCTCTCATTATATTTGATTTATTTGCTTCAATTCTAATTATATTGTATTATAGTGTGTTATCTTGCATTCCGATACCGTATTTAGTAAATTAGTTTGTTTCTCCTCAGATCGTTGCCGCTGTTTTTAATTATTTTGGGGTCCCCTGTTTCCCTTTTCCGGAGGCGCGGATTTTGCGAAATCCCTCCGCCCCACTAGTCACGGAACCGGGCCGAACCAGCCCGTAAACCGTTGACA >GGLTR3B2#LTR/ERVL GG000029 5 bp dups 10% subst @cut @general @gallus TGTCATGGTTTTATGATTTTTGGTTATCGGTATTCCACATCATAACATCATGTAGTGCACTGGGAGTTAAAGAGTTAATGCTCCAGTTCCGGGCACCTGTCCCGGAAGAGAAGAAGAACTACATTCCCCAGAAGACTGTTCGCTGTTCTGTTATCATTCCTGCTCAGGGGGAACACATATAAGGCCTCGGTAGGTCACCTGACGTCCCTCTTTTCGATCGTCAGGCTCTCTCGCTGCTGCTCGTCCCGACCGCACGCCATTAGTGTAAGGCCTTCAGCTTTTTCAGACACTCTTTCTCTCATTATATTTGATTTATTAGCTTCAATTCTAATTATATTGTATTATAGTGTGTTATCTTGCATTCCGATACCATATTTAGTAAATTAGTTTGTTTCTCCTCAGATCGTTGCCGCTGTTTTTAATTATTCGGGGTCCCCTGTTTCCCCTTTCCGGAGGCGCGGATCTGCGGATCCCTCCGCCCCGCTAGTCACGGAACCGGGCCGAACCAGCCCGTAAACCGTTGACA >GGLTR3B3#LTR/ERVL GG000017 5 bp dups 10% subst @cut @general @gallus TGTCATGGTTTTATGATTTTTGGTTATCGGTATTCCACATCATAACATCATGTAGTGCACTGGGAGTTAAAGAGTTAATGCTCCAGTTCCGGGCACCTGTCCGGAAGAGAAGAAGAACTACATACCCCAGAGGACTTTGCGTTCAGAGAGGAGATATAACCCCTGGCAAGGTCACGAGACCTTCCCTTTTTCCTTCGGCTCTCCTCCCTGCTGCTCGACCCGACTGCGCGTCTCACCTCAGCGTTATGGTGAGGCCTTTCCACCTTTCGGACACTCTCTCTCATTATATTTGATTTATTAGCTTCAATTCTAATTATATTGTATTATAGTGTGTTATCTTGCATTCCGATACCATATTTAGTAAATTAGTTTGTTTCTCCTCAGATCGTTGCCGCTGTTTTTAATTATTCGGGGTCCCCTGTTTCCCCTTTCCGGAGGCGCGGATCTGCGGATCCCTCCGCCCCGCTAGTCACGGAACCGGGCCGAACCAGCCCGTAAACCGTTGACA >GGLTR3B4#LTR/ERVL GG000017 5 bp dups 11% subst @cut @general @gallus TGTCATGGTTTTATGATTTTTGGTTATCGGTATTCCACATCATAACATCATGTAGTGCACTGGGAGTTAAAGAGTTAATGCTCCAGTTCCGGGTACCTGTCCCAGAAGAGAAGAACTACATACCCCAGAGGACTTTGCGTTCAGAGAGGAGATAAAACCCCTGGCAAGGTCACGAGACCTGGCTCTCCTCCCTTCTGCTCGNCCCGACCGCACGTCTCGCCTCAGCATTAGAGTAAGGCCTTCGGTTTTCGGACACTCTCTCTCATTNTATTTGATTTATTAGCTCCAATTCTAATTATATTGTATTATATTGTATTATAGTGTGTTATCTTGCATTCCGATATCTTATTTAGTAAATTAGTTTGTTTCTCCTCAGATCGTTGCCGCTGTTTTGTTTTGGGCCCATCTCTCTACCCTTTTCCCTTATCCCTTTCCGGGGCGCGGATCCGCGGGTCCCTCCGCCCCGCTAGTCACGGAACCGGGCCAAACCAGCCCATAAACCGTTGACA >GGLTR3C1#LTR/ERVL GG000026 13% subst 5 bp dups @cut @general @gallus TGTCGTGGTTTTATGATTTTTGTTATCGGTATTCCACATCATAACATCATGTAGTGCACTGGGAGTTAAAGAGTTAATGCTGCAGTTCCGTGGATTGTCGATAGTTCCGGGTACCTGGTCTCAGAAGAGAAGAATGAACTACAGCTCCCAGAAGACTTCATTATTCCGTTTCCATTTTCCATTCAGAGGGAAAGATAAAACTGNCTGGGAGTCACGAGACTGTCTCTCTTTCTGCTCGTCTCTGCTGTGTGTGCTCCCTAGCCGTCTCGCCTACAGCATTAGAGTAAGGCCTTCGGTTTTCGGACACTCTCTCTCATTTATTTGATTTATTAGCTTCAATTCCAATTATATTGTATTATATTGTGTTATCTCGCATTCCGCTATCATATTTAGTAAATTAGTTTTCTCCCTTAGCTCGTTGCCGCTGTTTTCCTTCTCTAGGCCCATCTCCCTACCTTTTCCCTTTCCCCCTTTCCCGGGGCGTGGGTCCATGGGTCCCTCCGCCCCATTAGTCACGGAACTAGGCCGAACCGGGCCGGAACCGTGACA >GGLTR3C2#LTR/ERVL GG000026 13% subst 5 bp dups @cut @general @gallus TGTCATGGTTTTATGATTTTTGTTATCGGTATTCCACATCATAACATCATGTAGTGCACTGGGAGTTAAAGAGTTAATGCTCCAGTTCCGTGGATTGTCGATATTTCCGGGTACCTGGTTCTCAGAAGAGAAGAAGAACTACATATCCCAGAGGACTTCACTGTTCCGTTTCCATTTTCCGTTCAGAGGGAAAGATAAAACTGTTCGCAAGTCACGAGACTGCCCCTTCTTTTNCTGCTCGTCTCTGCGGTGTGTGCTCCCTAGCCGTCTCGCCTTCAGCATTAGAGTAAGGCCTTCGGTTTTGGACACTCTCTCTCTCATTTTATTTGATTTATTAGCTTCAATTCCAATTATATTGTATTATATTGTGTTATCTTGCATTCCGATATCNTATTTAGTAAATTAGTTTTCTCCCTCAGNTCGTTGCCGCTGTTTTGTTTTTAGGCCCATCTCCCTACCCTTTCCCCTTTCCCCCTTTCCCCTCTCCCGGGGCGTGGGTCCGTGGGTCCCCCCGCCCCGTTAGTCATGGAACCGGGCCGAACCAGCCCGTAAACCATTGACA >GGLTR3D#LTR/ERVL GG000048 12% subst 5 bp dups @cut @general @gallus TGTCATGGTTTTATGATTTTTGTTATCGGTATTCCACATCATAACATCATGTAAAGCACTGGGAGTTAAAGAGTTAATGCTCCAGTTCCGTGGACTGCCGATTTTCCGAATACCTGGCTCTCAGAAGAGAAGAACTACATACCCCAGAGGACTTTGCGTTCAGAGGGGAAGATAAAGCTCCTGGCAAGTCACGGGACTCGCTCTCTTCTCGCTGCCTGGCAGTGTGTGGGTGTGCTCCCCAGCCATTTCGCCTTCAATTCAGAGTAAGGCCTTCGGTTTCGGACACTCTCTCTCTCATTTTATTTGATTTATTAGCCTCAATTCCAATTATATATTGTATTATATTGTGTTATCTTGCATTCCGATATCATATTTAGTAAATTAACTTTCCTCCTCAGATCGTTGCCGCTGTTCTGTTTTTAGGCCCATCTCCCATCTCCCTACCCTTCCCCCTTTCCCTTTCCCCTTTCCCGGGGCGTGGGTCCGTGGGTCCCCTGCCCCATTAGTCACAGAACCGGGCCGAACCGGCCTGTAAACCGTCGACACCCCCCCCTCCCCTCCCCTTTTCGGGCCGGTGGGCCTGTGGGCCTGCTGTCCCCCTGTCACGGACACAGATAGATCTAGAGATAACTCCGTGACA >GGLTR3E1#LTR/ERVL GG000046 5 bp dups 6-7% subst @cut @general @gallus TGTCATGGTTTTGTAATTTTGCTATTGGTATTCCACATCATAACATCATGTACAGCACGGGTAATTAAAGGGTTAATACTCCAGTTCCGTGGATTGACAACCTTCCAGATACCTGCTTCTCAAAAGAGAAGAAGAACTACATATCCCAGAGGACCTCACGGTCAGAGAAGGAAGATACGTCACGGAAGTCACGGGATCTGAGTCACGTGATCGGGCTCACGCTCTCTCTCTGGCAGCCAGGCAGAGGGGTGGGTGTGCTTCCAAGCCGTGCGCCTTCATTCAAGTAGGCCTTTCGGTTTCGGAAACTTTCTCTCTCTTATTTTATTTGATTTATTACCCTTACTTTCAATTAGATTGTATTATATTGTGTTATCTTGCATTCCGATATCATAGTTAGTAAAATAAGTTTTCCTCCTTAGATCGTTGCCGCTGCTCCGTTCTTTTTCCCTCTCTGAGCCCAGCTCCCGTTCCCCTACCCCTTTCCCTTTTCCCTTCCCATTTTTGGGAGCCAGGGGGCCCACGGGCCTACTGCCCCCCTGTCACGGGCATAGATTTATCTAGATTGATCTAGATAACTCCGTGACA >GGLTR3E2#LTR/ERVL GG000047 5 bp dups 7% subst @cut @general @gallus TGTCATGGTTTTGTAATTTTGCTATTGGTATTCCACATCATAACATCATGTAAAGCACGGGTAATTAAAGAGTTAATACTCCAGTTCCGTGGACTGACAACTTTCCGGATACCTGCTTCTCAAAAGAGAAGAAGAACTACATATCCCAGGGGACCTCACGGTCAGAGAGGAAGATACGTCACGGAAGTCACGGGATCTCGCTCTCGGACGGGAGCTCNCTCTCTCTCGCTGCCTGGCAGAGGGTGTGGGTGTGCTTCCAAGCCGTGCGCCTTCAGTTCAAAGTAGGCCTTTTGGTTTTGGAAACTCTCTCTCTTATTTTATTTGATTTATTAGCCTCAATTTCAATTAGATTGTATTATATTGTGTTATCTTGCATTCCGATATCATAGTTAGTAAAATTTAGTTTTCCTCCTTAGATCGTTGCCGCTGTTCTGTCTTTGAGCCCAGCTCCCATCTCCCTACCCTTTCCCTTTTTCCCTTCCCATTTTTGGGGGCCAGGGGGCCCACGGGCCTACTGCCCCCCTGTCACGGGCATAGATTGATCTAGATAACTCCGTGACA >GGLTR3E3#LTR/ERVL GG000047 5 bp dups 8% subst @cut @general @gallus TGTCATGGTTTTATAATTTTGTTATCGGTATTCCACATCATAACATCATGTAAAGCACGGGTAATTAAAGAGTTAATACTCCAGTTCCGTGGACTGACAACTTTCCGGATACCTGGTTCTCAGAAGAGAAGAACTACATATCCCAGGGGACTTCACGTTCAGAGAGGAAGATAAGCCACGGGAGGAAGTCACGGGATCTCGCTCTCTGGCTCTCTCTCGCTCGCTGCCTGGCAGTGTGTGGGTGTGCTCCCCAGCCGTGCGCCTTCAGTTCAAAGTAGGCCTTTCGGTTTCGGACACTCTCTCTCTTATTTTATTTGATTTATTAGCCTCAATTTCAATTATATTGTATTATATTGTGTTATCTTGCATTCCGATATCATATTTAGTAAAATTAAGTTTTCCTCCTTAGATCGTTGCCGCTGTTCTGTTTTTGGGCCCAGCTCCCATCTCCCTACCCTTCCCCTTTTCCCTTCCCATTTTGGGGCCAGGGGGCCTACGGGCCTGCTGCCCCCTGTCACGGGCACAGATTGATCTAGATAACTCCGTGACA >GGLTR3F1#LTR/ERVL GG000024, GG000025 5 bp dups 3% subst @cut @general @gallus TGTCATGGTTTTGTAACTTCGCTATTGGTATTCCACATCATAACATCATGGACAAAAGAGAAGAACTACGTATCCCAGAGGACCTCACGGTCAGAGAAGGAAGACACATCACGGAAGATACGTCATCTGGTTGCGCGCGGTGCTTCTTCACTTTCGCTTGCTGCCGGGAGAGGAGTGGGTGTGCTTTCCAAGCCGGGCGCCTTCATCAAGTAAGGCTTTCGGTTTCGGAAACTCTCTCACTCTCTCTCTCTCTCCCTCTCTATCGCTCTTTCGCTCTCTCTCCCTCATTCCATTTGGTTTATTATACTTACTCCCAATTAGATTGTATTGTATCGTGTCATCTTGCATCCCAACATCATAGTTAGTAAAATAAGTTCTCCTTCTTAGATTGTTGCCACCGCTTCGTTTTTCTCGGGAAGTGAAGGGGGAGGGGGGCCCGCAAGCCTACCGGCCCCCTGTCACGGGCACAGATCTATCTAGGTAACTCCGTGACA >GGLTR3F2#LTR/ERVL GG000024, GG000025 6% subst @cut @general @gallus TGTCATGGTTTTGTAATTTTGCTATTGGTATTCCACATCATAACATCATGGACAAAAGAGAAGAAGAACTACGTATCCCAGAGGACCTCACGGTCAGAGAAGGAAGATACATCACGGAAGATACGTCATCTGGTTGCGCGCGGTCTTTTTCACTTTCGCTTGCTGCCAGGGAGAGGAGTGGGTGTGCTTCCAAGCCGTGCGCCTTCATCAAGTAGGGCTTTCGGTTTCGGAAACTCTCTCACTCTCTCTCTCTATCGCTCTTTCGCTCTCTCTCATTTCATTTGATTTATTATCCTTACTTCCAATTAGATTGTATTATATCGTGTCATCTTGCATTCCAACATCGTAGTTAGTAAAATAAGTTCTCCTTCTTAGATCGTTGCCGCTGCTCCGTTTTTTTTCGGGAAGCCAGGGGGGCCCGCGAGCCTACTGCCCCCCTGTCACGGGCACAGATCTATCTAGATAACTCCGTGACA >GGLTR3G1#LTR/ERVL 10% subst @cut @general @gallus TGTTGTGGTTTGGTGATTTTTTGTTGTCAGTATTCCACATCAGAACATCATGTGAACCAGTGGAAGTTAAAGAGTTAATGTTCTGGTTCCGTTTACTGCCTCTTATGGGCATTTTGAGTATTCTGATGGGAGGGGAGGGGCGGCATCCCCGGAGGACTTGGCGCGAAGAGGAAGTGAGGTGGAGCTCCGGACAGGACCCCGGGCGTCTCTCCCTCCCTCGGGGCCGGCTCAGCTCGCTGCGGAGAAGGGCACGTGCTTCCCTCGCACTTTGGGTACTCTTCTCTCTCTCATTTTGTTTGATTTTGTTGGATTTAGTAAATTACCGTTCCTCCTCAGATCGTTGCCGGTGTGTTCCTTTTGTTAAACCCATCTACTAGCTCTCTGCCCTTCCCCCCACCCCTCCCGGAGCGCGCGGCCCGCGGCGCGCCCTGCTGTGAGGCCGGGGCCGGCCGGATCGCGCGGCAAATTGCTGGTACCCTTCCTTTTTTTTCCTTCGCCCTTTTGTCTCTCTTTTTTTTTTTTTTCCGGGCCTGTGCCCCCCTTGTCACGGACTCAGATAACTCCATGACA >GGLTR3G2#LTR/ERVL GG000401 11% subst @cut @general @gallus TGTTGTGGTTTTGTGATTTTTGTTGTCGGTATTCCACATCAGAACATCATGCAGAACAGTGGGAGTTAAAGAGTTAATGTTCTGGTTCCGTGTTACCGCCTTTTTGGGCATTTTGGGCTCCCGGAGGGGAGGGGAGGGGCGGCATCCCCGGAGGACTTGGCGCGAAGAGGAAGTGAGGTGGAGCTCCGGACCGGACCCCAGCCGGCGCTCGCTCTGCCTCTGGCCGTCTCAGCTCGCCGCGGAGGAAAAGCACGTGCTTCCCTCGCACTATCGTGGTTTGACTCGTACTTTGGGTACTCTTGTCTCTCTCATTTTGTTTGATTTGGTTAAATTTAGTAAAATACCGTTCCTCCTCAGATCGCTGCCATTGTGTTTTCTCTTKGTTAAAACTATCTGCTAGCTCTCTGCCCTTCCCCCTCTCCCGGAGCGCGCGGCCCGGGGCCGGCCGGGTCACGCGGCAAGCCGTTAGTACCCCTTCCTTCCTTTTCCTTCGCTCCTTTGTCTCTCCTTTTTTTTTTTTTCCTTTTTTCCTTTTTTTTTTTCTTTCTCCCGGGGCCTGTGCCCCCCTGTCACGGACTTATATCTAGGGATAACCCCGTGACA >GGLTR4A#LTR/ERVL GG000002, GG000050, GG000843 5 bp TSD 12% subst (oriented with GGERVL1) @cut @general @gallus TGTAGCGGAAATGCTAAGTCACGGCTTGAAGCAGTGATTGAGCACCTGGTGGGAAGGCAGGGCCAACCCAGGGGAGCTCAGGTGCATGCAATGCACCTGAGTGACCGGAAGGGGTGGAGCCAGGATCCACCCCTTCCCAGACCTCATTTAAGGGTTGGCAGTGGAGGCAGAGGGATCTTGCTGGAGATCCCTGCCTACCTGAGGCCTTCCAAGGGTAAGCAGCTTTTTTCCTTTGTTTCTGTGTCCACAGCTGCTGCATTTGGGCNTATCCTCACTTGCTGCAGCCTAGGACTTTGCTACCCTGCTGTTATTGCTGTGCTTTCCATCGCATTATAGCGTTACA >GGLTR4B#LTR/ERVL GG000050, GG000843 5 bp TSD 9% subst (oriented with GGERVL1) @cut @general @gallus TGTAGTGGAAATGCTAAGTCACGGCCTGAAGCAGTGATTGAGCACCTGGTGGGAAGGCAGGGCCAACCCAGGGGAGCTCAGGTGCATGCAATGCACCTGAGTGACCGGAAGGGGTGGAGCCAGGATCCACCCCTTCCCAGACCTCATTTAAGGGTTGGCAGTGGAGGTGAGGGCATCTCTTGCTGGAGATCCCTGCCTACCTGAGGCCTTCCAAAGGTAAGCAGCTCTTTTCCTTCATTTCTGTATCTGTGGCTGCTGCATTTGGGCTCGTTCTCATTTGCTGTAGCCAAAGACTTTGCCACCCTGCTATTATCATCCCATTATAGCATTACA >GGLTR5A#LTR/ERVL GG000075 5 bp FSD; 20 % subst level (though subs possible) @cut @general @gallus TGCCATGGTTTTGGCTGGGATAGAGTTAATTTTCTTCGTAGAGGCTCGTATGATGCTGTGTTTTGGATTTTTGATGAAAACAGTGGTGATAACACACCGATGTTTTAGTTGTTGCNGAGCAGTGCTTGCACAGAGCCAAGGACTTTTCTGCTTCTCACGCTGCCCTGCCAGCGAGGAGGCTGGGGGTGCACAAGGAGCTGGGAGGGGACACAGCCAGGACAGCTGACCCAAACTGACCAAAGGGATATCCCATACCATATGGCGTCATGCTCAGCAATAAAAGCTGGGGTAAAGAAGGAGGAAGGGGGGGACGTTTGGAGTGATGGCATTTGTCTTCCCAAGAAACCGTTATGCATGATGAGCCCTGCTTTCCTGGAAGTGGCTGAACATCTGCCTGCCGATGGGAAGTAGTGAATGAATTCCTTGTTTTGCTTTGCTTGCACGCGCAGCTTTTGCTTTACCTAGTAAACTGTCTTTATCTCAACCCATGAGTTCTCNCACTTTTACCTTTCTGATTCTCTCCCCCATCCCACCTGGGGAGAGTGAGCGAGCGGCTGTGTGGTGCTGAGCTGCCTGCCGGGGTTAAACCACAACA >GGLTR5B#LTR/ERVL GG000076, 5' and 3' 150 bp 80-85% similar to GGLTR5 Part of it known as GGREP1 5 bp FSD; 11% subst @cut @general @gallus (similar sequence occurs in goose) TGTCTTAGTTTCAGCTGGGATGGAATTGTTTTCTTCAGAGTGTCTGGTATGATGCTATGTTTTGGTTCTAGGAGAAAAACAATGTTGATAACACACCGATGTTTATAGTTGCTGCTAAGCAGTGTTGTACAGAGCCAAGGCCATTCTCAGTGAAGGGCCCAAGGAGCTGGGAGGGAACAGAATTAGGACAGCTGACTTAAACTGGCCAAAGGGATATTCCATACCATATGACATCANGCGGAAGGAGTTTTGAAGGGGGTGGGAGTTCATCTCGCTCTCTTCCGCTGCTCGGGGGGCTAGCTGGGCATCGGTCGGGGGGTGGTGAGCAATTGCTTGTGCATCACTTGTTATATACATTCATATATATATATATAGTCATAACTATTATCCTTTTCCTTTTCTCTATCTTAGTAAATAGTTTTATCTCAACCCACGAGTTCTACTTTTGTTTTTTCCCGATTCTCTCCCCCATCCCACTGGGAAGGGGGGGAGTGAGCGAACGACTGTGTGGTGCTCAGCCACCTGCCGGGTTAAACCACAACA >GGLTR6#LTR/ERVL GG000262, GG000263 5 bp TSD; 14% subst 3' 115 bases distantly related to GGLTR9 @cut @general @gallus TGTGTGGAAAAATACAGATCACGGCCTGAACAGGCGACTAGCCCATGAGAAAGGGCTCGTGTTAGCTTGGGAACACAAGTAAACTGCCTCTAGCTTCTGCATGTAGCTAGAAGAAACTTGTTTGTGAGAAACTGCTCTGTAGCTGTAACTAAGTMTCCTTGCTTTCTGTGAATGACCTTGCTTATCCTGATACGCGATGCTTTATTGTCTCCCGCTGTTATATATATGGCCACGGTACTAAGGGGTTGTGCGGACATCTTGCCGGCCGGCCGCCACCGGTATCTGCTGGGGGWAACCCCAGGGCGGACACTCTACCGGCCGGCCGCCCCCAGTAATGTGAGTACCTCTCTATTAAACTGATGAATGTTAACTTGCCTCCGCGTACTTTCTTCGGGATCGGTAAACCTTACGCAGAAGCGCTGGCGCTTTTGCATTACA >GGLTR8A#LTR/ERVL GG000081, GG000168 3' 120 bp 75% similar to that of GGLTR5A/B Many obscure subfamilies (other recon consensi 'included' are GG000062, GG000063, GG000070, GG000079, GG000265, GG000317, and GG000348; GG0000311 is part of a recent segmental duplication) 8% subst 5bp dups @cut @general @gallus TGTATTGGGTTTACGTGGCAAGGTTTTGGTAGCGGGGGGGCTGCAGGGGTGGCCTCTGTGAGCAGAGCCCAGCAGCTGCCCCATGTCAGATCAGAGCCAGCTCCAGCTGCTCCAAAAGGGACCCGCTGCTGCCAGAGCTGAGCCGTGAGCGACGCTGGGTGTGCCTCTGGGAGAGCAGATTTAAGGAAGGGAAAAACTGCTGCGCAACAGCAGCTGGGAGAGAGGAGTGAGAAATGNGAGAGAAGCAGCCCTGCAGCCACCAAGGTCAGTGCAGGAGGAGGGCAGGAGGTGCTCCAGGCACGGAGCAGAAGCTCCCTGCAGCCCAGGAGAGGCCCACGGAGGAGCAGGCTGTCCCCCTGCAGCCCACGGGCACCACGCGGAGCAGATCTCCACGTGCAGCCATGGAGGAGCCCACGGTGCAGCAGTGGATGNGGCCTGAAGGAGGCACAGCCCATGGAGAGCCCCCGCAGGAGCAGCCCCGGGCCGGAGCTGCAGCCCGTGGAGAGGAGCCCGCGGTGGGGCAGGAGGGCTGGGGGAGCTGCCGCCCGTGGGGACCCGTGCTGGAGCAGTGCCTGAAGGGTGGGCCCCGTGGTACGGAGCCGTGTTGGAGCAGTGCTGGGAGAGCTGCAGCCTGTGGGAAGCCCACGTGGGATCAGTTCGGGAAGGACGGCATCCCGTGGGAGGGACCCACGTGGAGCAGGGGCAGAGAGTGACCATGGAGGAGCGGCAGAGACGAAGCGTTATGGACTGACCGCAGCCCCCATTCCCTGTTCCCCTGTGCTGCTCGGGGGGAGGAGGTAGAAGAGGGTGGATGGGGGGAAGGTGTTTTTAGTTTGCTTTTAGTTCTCACTGCTCTAGTCTGTTAGTAATAGGCAATAAATTACATTAATCTCCCTACGCTGAGTCTGTTTTGCCCGTGACGGTAATTGGTGAGCGATCTCCCTGTCCTTATCTCAACCCTTGAGCCCTTTTTCATTGTATTTTCTCCCCCTCTTCCTTTGAGGAGGGGGAGTGAGAGAGCAGTGTGGTGGAGTTTAGCTGCCCATCAGGGTGAAACCACCACA >GGLTR8B#LTR/ERVL GG000081, GG000168 20% subst 5bp dups @cut @general @gallus TGTATTGGGCTTACGTGGCAAGGTTTTGGTAGCGGAGGGGCTGCAGGGGTGGCCTCTGTGAGCAGAGCCCAGCAGCTGCCCCATGTCAGATCAGAGCCAGCTCCAGCTGCTCCAAAAGGGACCCGCCGCTGGCCAGAGCTGAGCCATGAGCGACGCTGGNTGTGCCTCTGGGAGAGCAGATTTAAGAAAGGGAAAAACTGCTGCGCAACAGCAGCTGGGAGAGAGGAGTGAGAAATGTGGAGAGAAACAGCCCTGCAGNCACCAAGGTCAGTGCAGAAGGAGGGCAGGAGGTGCTCCAGGCGCGGAGCAGAAGTTCCCTGCAGCCCAGGAGAGGCCCATGGNGGAGCAGGCTGTCCCCCTGCAGCCCACGGGCACCACGCGGAGCAGATCTCCACGTGCAGCCATGGAGGAGCCCACGGTGCAGCAGTGGATGTGGCCTGGAGGAGGTGCAGCCCATGGAGAGCCCCTGCAGGAGCAGCCCCGGGCCGGAGCTGCAGCCCATGGAGAGGAGCCCGCGGTGGGGCAGGAGGGCTGGGGGAGCTGCTGCCCGTGGGGACCCGTGCTGGAGCAGTGCGCTCCTGAAGGATGGGCCCCGTGGTACGGAGCCATGTTGGAGCAGTGCTTGGAGAGCTGCAGCCTGTGGGAAGCCCACGCAGGATCAGTTCGGGAAGGACGGCATCCCGTGGGAGGGACCCCACGTGGAGCAGGGGCAGAGAGTGACCATGAAGGAGCGGCAGAGACGAAGCGTTATGGACTGACCGCAGCCCCCATTCCCCGTTCCCCTGCACCGCTCGGGGGGAGGAGGTAGAAGAGGGTGGATGGGGGGAAGGTGTTTTTAGTTTGCTTTTAGTTCTCACTGCTCTAGTCTGTTAGTAATAGGCAATAAATTACATTAATCTCCCTACGCTGAGTCTGTTTTGCCCGTGACGGTAATTGGTGAGTGATCTCCCTGTCCTTATCTCAACCCNTGAGCCTTTTTTCATCGTATTTTCTCCCCCTGTTCCTTTGAGGAGGGGGAGTGAGAGAGCAGCGTGGTGGAGCTTAGCTGCCCATCAGTGTGAAACCACCACA >GGLTR9#LTR/ERVL GG000007 5 bp dups; bp 1-205 75-80% similar to GGLTR4; 13% subst @cut @general @gallus TGTAGGGGAACTGTTAGGTCACGGCTTGAACTGGTGATTGAGCACCTGGTGAAGGGGTGTGGCTGGCCCAGGGAGCACAGGCAAATTGTTTGCACCTGTGCTCCCCACGTGACCAGAAGGGGTGGACCCAGGGTGGAGCCACCCTGGGCTCATATAAGGGCCAGCCACTGAAGGGAGAGCATCTCTTGGACCTAGGCTGCTTCCTGAGAAGGAGTGCTGTATAGCCAGAGAGCCCCTTCACCAGTTGGGTGAGTTCAACTCTTCTTTCTGTATATGACTATTGGCCTACCTGTGAATACTTTGCCTGGTATCGCCAAGAACCTGTCAGAAGCAATTTTGCTTCTTCGTGAGCAGAACA >GGLTR12A#LTR/ERVL GG000043 5 bp dups; 3' 220 bp 70% similar to those of ENS1-LTR; 5% div @cut @general @gallus TGTGAGAACCCTTCTTTGTCTTCTGTCTCAAAGCTTGCTTCCTGAGGTATTTCTTGTGATAAGACTCTTAACTGATTTATGGAGGTGGCAAATGATGGGTGCTACCGTGTGACAATCAACATCACTTTGACATTTGAAAGCACCTTCCTCCAGAGCTGCTTGCCTCCGGAAGAGAGTGCTCAGGAGTGGTTACTGGCGGAAGATCTGGCCTAATAGCCCCAGCTTGGTGTGGGAAAACTGGGGAACGACACCATCGTGCCCTGTGAAAAACAGGATGCAGATGGGCATCCCTGCTCCCTCTTATCTGCTGGCAAGGCCCGGAAGATGATAACAAAGGAATTTCTGCTGAGATCCCAGAGCCAGTAGCTGCCACTCCAAGGAGAGCTGACTCAACCACTTCGGATTCGAGCTGTCACTCAAAAGAGAGCTGACTCGACCACTTTGGACTTATAAATAAGTTTGTACTGCCATCGTCGTCGTCGTCGTCGCCGTGGWCACCGTCGTCAACAGAACAACACCCGACGACCCACCACTACTGAAGATCAATGACTGAACTACGAACCACGTTGGACCATGGTGGTGACTATCTCCCTCTTGCTTCCTATANGGACTCCTTGCTTCTATTTCCTATCTTTTCTGTCGCCCTTCTCCCCTTCCCCATCTCCCTGAACGACTAGGATTTGTAATAAACTGGTCGGACCAACATTTGAACCGTTGTTTCTTAATCTCATGCCGGGTATACACACATCAAAGAACCTCCTCTCCCTCCGATAAATTGGAGCGAGACA >GGLTR12B#LTR/ERVL GG000043 5 bp dups; 3' 220 bp 70% similar to those of ENS1-LTR; 7% div @cut @general @gallus TGTATGAATCCTTCTTTGTTTTTTGGCTCAAAGCTTGCTTTCTGAGGCATTTCTTGCGATAAGACTCTGACTTAGATGAGAGGTGGGTGTTGCCGTGTGGCAATCAACATCACTGTGTGGACAATTTTACATTTGAAAGCATTTCTCCGGAGCTGTTTGCCTCCGGAAGAGAGTGCTCAGGAGTGGTTACTGGCGGAAGATCTGGCCTGTGACTAAATAGCCCCAGCTTGGTGTGGGAAAACTGGGGAATGATACCATCGTGTCCTGTGAAAAACAGGATGCAGATGGGCATCCCTGCTCCCTCTTATCTGCTGGCAAGGCCCGGAAGATGGTAACAAAGCAGTTTCTGCTGAGATCCCAGAGCCAGTAGCTGCCACTCCAAGGAGAGCTGACTCAACCACTTTGGATTCGAGCTGTCACTCAAAAGAGAGCTGACTCGACCACTTTGGACTTATAAATAAGTTTGTACTGCCATTGCAAATCGTCGCCGTCGTCACCGTGGNCATCGTCAACAGAACAACAACGCCCGACGACCCACCACTACTGAAGATCAATGACTGAACTACGAACCACGTTGGACCCATGGTGGTGACTATCTCCCTCTTGCTTCCTATAAAGACTCCTTGCTTCTATTTCCTATCTTTTCTATCGCCCTTCTCCCCTTCCCCATCTCCCTGAACGACTAGGATTTGTAATAAACTGGTCGGACCAACATTTGAACCGTTGTTTCTTAATCTCACGCCGGGTATACATATATCAAAGAACCTCCTCTCCCTCCGATAAATTGGAGCGAGACA >GGLTR12C#LTR/ERVL GG000043 5 bp dups; 3' 220 bp 70% similar to those of ENS1-LTR; 9% div @cut @general @gallus TGTATGAATCCTTCTTTGTTTTTTGGCTCAAAGCTTGCTTTCTGAGGCATTTCTTGCGATAAGACTCTGACTTATCTAGGAGATGAGAGGTGGGTGTTGCCGTGTGGCAATCAACATCACTGTGTGGACAATTTTACATTTGAAAGCATTTCTTTGGAGCTGTTTGCCTCCGGAAGAGAGTGCTCAGGAGTGTTTACTGGCGGAAGATCTGGCCTGTGACCAAATAGCCCCAGCTTGGTATGGGAAAACTGGGGAATGATACCATCGTGTCCTGTGAAAAACAGGATGCAGGTGGGCATCCCTGCTCCCTCTTATCTGCTGGCAAGGCCCGGAAGATGGGAACAAAGGAGTTTCTGCTGAGATCCCAGAGCCAGAAGCTGCCACTCCAAGGAGAGCTGACTCAACCACTTTGGATTTGAGCTGTCACTCCAAAGAGAGCTGACTCGACCACTTTGGACTTATAAATAAGTTTGTACTGCCATTGAAAAGTCGTCGTCGTCAACGGAACAACAACGCCCGACGACCCACCACTACTGAAGATCAATGACTGAACTACGAACCACGCTGGACCCATGGTGGTGACTATCTCCCTCTTGCTTCCTACAAAGACTCCTTGCTTCTATTTCCTATCTTTTCTATCGCCCTTCTTCCCTTCCCCATCTCCCTGAATGACTAGGATTTGTAATAAACTGGTCGGACCAACATTTGAACCGTTGTTTCTTAATCTCACGTCGGGTATACATATATCAAAGAACCTCCTCTCCCTCCTATAAATTGGAGCGAGACA >(AAAATAACG)n#Satellite GG000011 @general @gallus AAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACGAAAATAACG >(ACCCATAGAG)n#Satellite @general @gallus ACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAGACCCATAGAG >(ACCCATAGGG)n#Satellite @general @gallus ACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGGACCCATAGGG >(ACCCATTGGG)n#Satellite @general @gallus ACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGGACCCATTGGG >(ACCCCATAGGG)n#Satellite @general @gallus ACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGGACCCCATAGGG >(CCCCATTGGG)n#Satellite @general @gallus CCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGGCCCCATTGGG >(CTCTATGGGG)n#Satellite @general @gallus CTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGGCTCTATGGGG >(GCCCCACAGCT)n#Satellite @general @gallus GCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCTGCCCCACAGCT >GGXHOI#Satellite/W-chromosome @general @gallus AAATACCACTTTTCGCCCGAAAATCACGCATTTTCTCCCCGAAAATACCACTTTTCGCCCGAAAATCACGCATTTTCTCCCCGAAAATACCACTTTTCGCCCGAAAATCACGCATTTTCTCCCCGAAAATACCACTTTTCGCCCGAAAATCACGCATTTTCTCCCCGA >Z-REP#Satellite/macro Consensus for part (10.5 kb) of a 24 kb macrosatellite. The 24-kb unit, 4% diverged on average from the consensus, is repeated about 830 times in the diploid genome of a female chicken, suggesting that nearly the entire terminal heterochromatin on the Z chromosome consists of this macrosatellite family. Ref: Hori T et al Characterization of DNA sequences constituting the terminal heterochromatin of the chicken Z chromosome. Chromosome Res. 1996 Sep;4(6):411-26. The current consensus contains fragments of interspersed repeats: GGLTR7-int (pos 1-2222), GGLTR5B (4271-4777) and CR1-F3 (5753-5812). Includes recons consensi GG000023, GG000132, GG000131, GG000041, GG000142, GG000205, GG000204, GG000563, GG000562, and GG000397 @erv @gallus TTCATCGGCAAGATTGGACTATTGTATTTGGATTCACATTCAATTAGTAATCCGAAATCCACAAGTTATCTATGGTTTCTTTTCTCCTTCTCCAGTTGCATATCCTCAAAGGGACACGAAGCTTTACCCTGAGTGGGCTAGCCGTAGCTCTTGCTTTGAACTTAGGGCTGCATTTTGGCTCTACCAGGCATCCCTGATAGCCACACGGCTAAGCATACCTTAGTGAAGATTTCTGTAACTTCTGGGGGTACACCACTGTTTGTCCCAGTTTGTATGAAAGCCAGACTTACCATTTTCAGTCAGTTCATCTTGTTTGACCCTTAGCTCCAGTGTTATTGAATTGACTCTCTGCATCCATTTGTTCTGATGAGTCTTGCCAGAGGAACGGTTTTGGAGAACCTGGCATCTACAGGCATGTATGTATTCCTCCTTATTTTCTCAGCCTCTCTTGAACTGATCCCAAAAGGGAAGCCTTTTCTTGTTGGGCAGTAGCTCCGACTTGTGTTGCAAAATCATCTNCGGGTGGTAAGAGGCACCCGTGCCCACCGGAAACGAAACCTCTTTCTCCTGCTCTCCTAGCTGCAATTTCACCGGTGGATTTGCTAGGAATAACTTCCCAGGTTGCCATTCTTCAGCTTTTGCAATCAGAGACGGTTGGATTTGTGCACCGCTGTCTCATTTCCCTGCAGTTGGCACAGTGCTTTCGGTCCAGCAGGGCTGGAAGCCTCCCCCTCCACGGGCTCTTCCAGGCCCCCCCCCTACCTCTTTCTGAGGGGACCTCTGNGTCCTACGGCTCTACTCTAGCACCGCAACAGGAACAGCTGTTGCTCTTCCCAATGGCCTTACTATCTCTGTTCCTCAATCCGTTTTTTTCCTTTCTCTTGCTCAGCTCTCTTTGGATCTACCACCCTGTTCCACCTTGCTCATCTTGGCCTTCCTCAGCCTGCGTCCTTCTGCAACTTTTCCCTTCCCAAACTCTCATCACTACATAAACAACTAGCATGACATTTCAGTTTCACCTCCTCCTCTCCTCCCGGAGATTTCCAGTGCTAACACTGGAATTTTGGGTTTCCGAGATCTCTGCACATGAAGGCTATTCTCACTGCCAGTGCCCCATCCTCTCCACCTCCCCCCCTTTGCAAGTAACGCTGTTTACAACAGCACTCTCTGTGTGGGGCCGGGGCGGGGGGGGGGTGTGGGGGGTTGCTCTCCTGCCAGTGCAGATACACTCACTTTCTCTTTAACCCTTTTTCCTTTGTCCCCTCTTCATACCCTCAGTTACACTTCCACATACCCTCAGTCATGCTTCTGTTTCCCATTAGCAATTACACTTACTTCTGCCATCAAAACCGTTTGTCCCATTCCCTTCAGAACCCACCAATCAAACAGCACAGTTCTTCAGTGTCCATAAACACCCAGTACTTAGTCTCGTGATGAGAGCACTCCATTCTAACAACTGGTCATGTTACTTCATGGACCTTCCCTCCTTAAGAAGAACAGGAACTGTAAGAAGGTATGATAGTTACGGGTCCCCTTCCGATGCCGCTTCTCATCATCTTCTAACTTCCACATTAAGCACCACTGATTGCAATACTTGATGAGAGTTTCCTTCCTCAGGGTGCCTCCAGGTTCCCCTGCAGTATCCCACCAGTGTGCCAGTGCACATCCCAACGGGGTTTCTTTGGGAATTTCCTTCCCCTGGGAGCCTCCCACGATGTTGACCAAATTCTTCTTGATTCCTCATTTCCTCAGAGTTTCCACAGGCAACCCTGGACACCGCCTACTGATCTTGTTCAGATGTGAACACTTGGATCTCACAGATCTCACAGAAGCCTGTCCACCTTCCTTGACACGCTTCCCCGCAATCAGAAGACAGTACTACGCAAACAGGCTGACACTCATTCCCTGCAAGGAACGCATCTCACTCACACCACACTCACTCTGATCTTTAGAACAAAAGCCATGGTTTCGACGTAATCCACAATGCTGACGACGTCTTTTAGCTGGCATCTTCATAAGGCTAGTACATTAGTCAGTAAGCTTTCAGGTTTCTCTGAAAGTCAGCTGGACCTGCAATGATTAGATACACGGTACGGAACACTCAGCAGATGGTGATAACAATCACACAACCTAGAACTCCCACTACTATCTCCAGGAGAATGCCCGTTATCATTTGACAAAATCCCCACTGTTACCAATCACCGAAGGCAGCTGTGGTCTTTGCAGACAGCCACATCCACGGGGATTGGAGGCTTCTGAACCGGAACCTTGTCTTTCCCGTCTCGTGCCCGCTAAGTCACGTTGTTTGAAAGCAGCACCTTCGCGGCAACCTTGATTTCTGCAGCCTTCTCCGAGCTTTGTGCCACGAGAGCTGTGCCGCTTCTACCTGTGACGTGAGAGCATATGGAAGGCCCTGCAAGAAGTCTGGGTAGGTGATGNCAGTGTCTCTTCCTTTCCCCCCTGGTGCTGGACATAGCCGGGAACGGGAGTGGGGGACATCCCAGCAGTGGGTTCCTACCTCAGCAGAACGGAAGGGCTGTTCCGATGGGTGTATTTGAAGTGGAGTGAATCTGACGCTGATGAGAGAAACGAGGGGCCTGTGAAAAAAAGGAGCGTGCTGCATTTGGTGGTGCAAGATGTTCTGGGAACTGCTGCCAGCAATGCCCAGAAGGCTTCCTTTTTGCTGGGGAGAGCTTTAGCAAGGATTTTTTATATGAAAAGAGTTCATCCTATGTTTCCTTTCCATTGACATTTCATACGACTGCTTGAGAAATTGCTATTTCTTGCTGTAGAGAATGCACATACACCCTGCACTTGTATCTGCACAAAGAATCTTCTAAACATCACTGTCCGTGTTTCTTTTTGGCACTGGGATGGAGCTGTGTGGAACACAGACTTGGATGAACCTTCAGTCAGGTGCAGGGATGCGTAATGCTCATCTAAGATGTCACGCTGACAGCAGCAGTAGAGAGGCAAATTTCATAGGGTGGCATGCTTTTTTTTTTCTTTTGTTTCAGTGATAACCGTGGAAGCATAGAAGCGTTACCCAGACAAAATGGGCGTTTGTCACCTGGGCTTTCTACCAATGCCATAGGCAGTGGAAGTCAGCATCGGAAGCATCCGTGAGAGCCCTGCAAAAGACTGGTGAGAGTTACCCTGGCGGCCTCCTTTGGCAACCTCAGGTCTCTGTAAGCTCTCAAGCTGTGTCGTAAGTCCCCCCGTGGTGCTGACTCAGCTCTCCCTGTCTTTGGTGTAGGAGAGCTGGTCTTGAACTCCTTCCTGTTTCCTGCCTATCATCTGCTCCCTGCTTTGCCCATGGCCCAGCGAGCCTTTTATTCCTCGCCCCCAGATTTGCACGTGTGGATGAGAGCATCTGCTTATGTACGTTTCTTTTCTGCTTGTGGTGTCAGGCTGAGCGACAGCTCCCAGCCGAGCTTGTGGTTAGCGAGACACGGAGTAGCTGGAGATGGAGTTCTCTGTGTCACTAAAGCATGAGCTTGATGGCTGCCGTGAGCCAAAGCGAGAGAGTTTGTGTGTTTGATTTCTGTGTTGGGCTGAGCGGGTAGAGCAGGGCAAGGGGGCTGATTTGGACGTGCTGCTTTCCNAATACGGTGCTGTTTGCGTGGCAGTGCTTCTGGCGTTGCAAATTGTGTCAGATGTCAATGAATTCCTTGGAATCTGTTGAGTTGACTTGTGCAGGTTTCATTNTGGAGCTGAACCCTTCCTGGCCGCTTCTGTGCATAGCCATGGCCTTTGCTTCTTTCTTGCCTTTTTTTCTTGGTTGCGTTTGGCACTGTGCAAGCCGTGAATTGCCAGGGAAGAGCTGGAAGTGCTCTGGAGTTGTGGGGGACAAACTCCTAAGAAACAATGTGCAGCTTCAAAGCCCCAAAGTTTGGAGAGATGAGAGATGCGCTGCCTGGTGCAGGACATGATGCGCTCTGCAAGGCGCTTTCCATGAAGACCTCAGATCTGCGCTCAAACTGCATCCAAAGCAACCCAATGCCCCGTGCTTGTTGTACCCGGAGGTATCGGTGCCAGGAGTTGCTGCTGTGTTTGCCGTGCCATTGTGTCGGCAGGGTGACGTTCATGGGGTCCAATGCCCTCAGTCATTCAAAGCATCCTTGCAGATGTTCCTAGTGAGGGGCATGTTTCATTGACACCATAGGTTGTTTTCTGGAAAATGAAAGAGTGGGCTTGCGTACCTCCAGATGGTTTTCATTTCCTGCTGACCACAGTGCACGTCACGTCTGCTGCCATTGCCCCGCGGCCCTGTTGTGGTTTAAGCCGGTGGGTGGCTCAGCACCACACAGTCCTTTGCTTACTCCCCCCTTCCCGGTGGGATGGGGGAGAGAATTATGGGGGAAAAAAAAAGAAGGTGGAACTCATGTGTTGAGAGAAATCTCTTTCCAAAGGTAGAGAAAAGGACAGAAGTAATGGATGCACGCACACACACACACACACATATATATATATGAATGTATGTAANAAGTGATGTAGAAGCAGTGGCTCAGCACCTCCCAAGCAATGGGCAAGCAGAGGAAGAGAGTGAGATGAGCTCCCACCCCGTCCATAACCCCTTCCACTTGATGTCATATGGTATGGAATATCCCTTTGGCCCGTTGACATCAGCTGTCCTCATTTGGTTTCCTCCCAGCTCCTTCTTGAGAGCTTTGCTGAGAACGGCCTTGGCTCTGTCCAGGTCTGCTTCTCAGAAACTATAAACACGAGAGTGTTCTCACTGTTGTAGCATCATAGCAGACACTGAAGAAAAATGGATCCCACCTGAGACTAAGACAGCCCCCCAGTGTCCGTGCAGCGAGCCGTGTGGGGCTGCAGGTCGTGCATTTCCCTGGCAGCATTGGCCAGGGGTGCTGGGGAGGTTTGCGTGCTCAGCTTGGGCATCGCGCTGCTGTGCCTGTCAACACAGCATGCTTCGTGCTCTCCGAGCAGCAGAACAGCGTTTCATCAACAAGGTGCCGTAATATTTACTGGAACCAGATGCATTTGTGTCTCTGAGGCTGGGTTTACCCNACGAGCTCTTCTCGAAGGAGCTGTTTTGATTCCCTTTGTCCGTGTGCGAGCGGAAGCGCTTACCCCNCTTGTGTTCTGTCCCTCGGTATTACTCTTGGTGGGCAGAAGGAGCTGGTGGATTCAGCAGCAGTAGATTCTGTTGGTTTCCTCTNTGCTGCTTCATCCCTGGAGCTCGCTGCTGCACGGAAGAGTACAGGCGTGTTTATCCCAGGGCTGCTGTAAAGGGGAGCCCGGTTGGCGTAGCAGTGAGCAGCAGCTAACGGGCTGTGCAGAGGAGGGCTTTGCAGAAGGAGCAGGAGTGCCTGCGTCCATCTGTATCCTCGGATACGTTCTGGCAGTGAGGCAGCAGCTGTGGCCACAGTGACTGAATGCAGACTTGGCCTGGGGCTGCCACGTGGCGCTTCCTAGCCCGCTAGTATACCTGGCAAAGCACAGCCACCCTGCACCCAGGGCAAGCGTTTGTCTTAGTGTCATGTTTCATGCTGTCTTGTGAAGCTCAGGCACTGGGGGCAGCTTCCCCCCAAAGAAAAGGAGGAGGAAATGAGGTCGTCATGGAAGCCAAAAGGCAAAAATGCGCTCGGGAAAGAAATTGGCAAAGCAGTCTGGTAGTAGTGCTGTGTTTCTCTTCCTTTATTTCCATCCAGGTGAAAGAGATGGCTGCTCTAAGCCGCCCTTGGGTGCAAAGAAGGACCCTAGTGTGGATTTGCCATAGGCCCAGCAAGAGGCTCAACAGCACCAAGCGCCGGGTCCTGCACTTTGGTCCCGCCAACCCCATGCCAGCTTCTCCAGGATTTGGCTGGGATGGAATTCCAACCACGCACTGATTTCTCGAACGCTGGGGTGCCCTTTTGGAATCCTGTGGTCTTGTGACGTGGTCTTGCCTCCCCACCTTGTCCGTCCATGGTGGAGCAGCCGGGTGGCCCTTAGTGATGTCATAAGCGGCTAGAATGAGGGGAGGAGCAGCGCGTGCTGCTTCCCTTCATTGGAGCGCTTGAGCTCGGCGTGAGTACGTGGCTTGTTGCACTTGTGCATCGACTGAGTCCGTTCGTCTTCATCCCGTCTTGCGCAGCGCCTTGTAGGTAAGCTGAGACGGTGCGGGATAGACGGGTGGGCAGCGAGGGCTTGAGAAGTGCTGGCTGGCGGAGCTCCTAGGATCATATTGCTTAGTCTGGACCGTCAGANGCCATTTTCCCCCAGGCCATCCATTCCAAAGCCATCCATCAAGGTGGCATTTGTCCCACGGTTCTTCCCTCGTTCTTCCCTTTGCTNAATTGTGCAGGCTCACTGACCTGCTCTTTCTCCCTCCCCTGCCCACCCTCCGCCTGCTCCCTTGGTGCAGCTTTTGCTCGCGGAAGATCAGAGCAAAGTGACAAGGAACGGCTGCGGGTTCGAGGATCTTCTTCTCCCTTGTTCTGATCTCTTGCCAGGTACGTGCCACGTTTTGTNCCGCCACATGGTTCAGCAGCCCGTGTTTAGTCGCACCGTGTGTAGTAACACAGCCTCGTCCAGCTGGGATGCGGCNCTGGTCACGTGTGGGTTTTTTCCACTTCCCCTCCAGCTCAGCCCTCGGCAGGATGCTGCCTGTAGTGCTGGGAGCAGCTAGTGTGAAGGAAGGCAATCCCTTAGGCAAAGAGCCCTAGCCCCAGTCTGTGCAGAGCTGCACAACATGAGCCAGGGGCACAAGCGTGCATGCTTTGGCTGTGTGAGTGTGCCCGACAGCTGTAGGGAGCACAGCGGGCATGCAGGCAGAGGAAATGCGTGGGCAAGGCTGCGGCCGGCGCTGGTGGTGAGGCTGCTGCTGGGAGCCGGGGGCTGGGGAGCAGCTCCAGCCCCAGCAGTGACACCTCTCCCTGGCCTGCTACTGCGCTCTCAGCGTGCTGCGGGCAAATGCATCTGCTGCTTTGTGCCAGAGTCCCCATCTGCTAGCAGAGGGACAGCGACTTGGTCCAATGCTGCGTATTGCAACGGCTGTCCCGTTTGAATAGACTGCACANAGTGGTTGTTTCTAGAACACTGCCTCCGCCAGTGGGCAACTGAGAGTAGTTCTGAAGAAGNCTCTCGATCCAGTGCTGTGTGAGCACAGGAAATGTGTTTCTTTTCTGTTGCAGCTTGTCGCGCCTGCTGTGATGGGCATCGCGAGCAGCGAGATCAGCCGTGGGCCTGACCGGGCGTTGACGGAGGTACAGTGTGAAGCTCTGCTTGGTCTCTGTTCCCTGACTTGAGCCAGCAGAATGAGCCACCGGTGTGCTCTCCTGCTTTTCAAGAGAGAGAGCATCCTTCCGGCTCTCTCGGTGTCCCTGAAGAGCTGCCTTAAAAGCTTCATTTCCTTGCTAGTGGCATCGAGATGGCACCCTGAAATCCTCCTTGTTTGTCCTCAGCTCCTCACCATGGCCTGTGCTCTCTGTTTCAGCCTGAGAACCAGGGGAAGCCCTTGCTGGTCCGTGAGGAGCCATCTCTTAATATTCCGGCTATTGCTGCTGGCCATGTTATTAAGAGATACGTTGCCCAGGCAGCGGATGAGCTCTCCTTGGAGGTAAGCAGATAAAGAAGGCGTTCCTTGTTGTCACGGCCAGAAGAGTATACCGTGTGAATGCATCAGGAATATTCTCAGACACCTTCAGAATGCCTTGTGAGGCGAAGCCCAGAAGATGCAGGTCCAGATAGGACTTGCACTGGGTTGGATGCAGGGAGGAGTTCAGCCATGTCTAAAAGACGGTTTCATTTGGCATGCTTGCACTGTATTCTGTCTGGTGTGTAAGGCAGTGACTCTTGTACCTCCAAGCCCAGCTTTCCGACGGGAAATGCCTGAAGAGCTGCCCCGGTGCAATTGCTCTCAAGCTGTGCGCTCTTTGGCAGTGCAGAAGAAGGGTGCCATTTCAGCTGTGCTTTCCTCCCAGCTGTGCTGACGCTGGGATTGATGTTGCAATGTCTTGCAGGTGGGAGACCTGGTGTGCATTACTGCTATGCCAGCAAAGGAGCAGAGCCCCTGGTGGAGAGGCAAGCGTGGCTTTCAGGTAGGCACAAGCTTCAGACTCCTGGGCGCAACTGCAGTCAAGTCAGGAACGTCAGCTTCGAGCTGCTCGGCCTGCACAGGGTGGCTTCTGGACGTCAACAGTTTCCCTGTGTCGCTGTCAGAGGCCTTTCCCTTTGGCTCTGGGCTTGGGTGGGAAACCGTCTCCTCATGTGACTTAGAAGCAAGAGCCTCTCGTGCTCAATACGCAGTCAGGAGTTGACCATCTCTGTCCTTTGTACAAGCACGGAGGACAGAGCCATCTTNTGCGGAACCGAGTATTGCTTTTGTAGGTCTTCTGGCTGCAAATGTTGAATGAGGGTTACTTTTCTGCAGGCCATTCTTTCTTGGTTGAACAGTTGAGGCCTGAGAAACGCTGCATTCAGTATTCCATCCCTCTTTTTGTTCTTGTTCCAGGTTGGGTTTTTCCCTGGTGAGTGCGTGGAGCTCATTAACGGAAAACTTCCTGAGGCCCTCATCAATTCAGCGCCAAAGCCAGGTACGGATGTTACATGTGATGGCGCGGGGAAGTCAAATGGAGTCTTTTTCTGGGTGTGTTCTGTGTTGAATACCTCCTTTATCCATCCCACGTTCTCCTCTGTGTTGATGATCCTTCCTGCATCCCACGGGGCGTAGGGCTGCTGTTTTGTAGGCAGTGAGAATGAGGGCTTGGGCAAATGCTCGAATCCTTGTAGAATGCAGTGTTGGCAATGTTCTTGCCGCTTTNACGTGCTCTGTAGAATGTGTTTACGCTCAGCCTGGTCCCACTGAGCCCAACCTGAAATGAACTGGTTTCTTCCTTTTGTTGTGCAGTGCCAAAGAAGCGTGGCAAGCTCCTCAGCTTCCTTCGTTCCTTCGCGAAGGCCCGCCCAAAGGAACCGAAGCAGCGGGAGATGGAGCTGGAGAAGGAGAAGGAAGGGGTGTTTGGCTGTGACCTGGGAGAGCATCTTCTCCACTCTGGCCGTGACGGTAAGGAACAGCCCGTTCCTGAGAGCTTCCTCTGTTGGGCATGTAAAGATGAAAGGGAGATCATCTCTGGCAAGGGGCAGGTTGATAGCGGTGGAGAAAGGTGAGGTGGGAGTTGATGGCTGAAAGGTAAGCTGAGGCTAATGCCCATAGGAGAGCAGCCCACTTGTATTTGCTTAAAGCAAAAGGTGTAAGCCAATGCCACGCTAGCCTGAAAACAAAGGCAGCCTTTTGGCCCAAGAGAGTGTACTGCGTCAGTTTCCTAGCTCTTCTGGACGTGAGGTCTCACGCCTCCATTGCGGTGGGAGCTGTGATGGGACTTGCAGTGTCTCTGGCTTCCCCAGAATTACTTTCTGCAGGCTGGTTGGCAGGTCCTGGCATTTCTGGAAAGCCAAGAACACGTCTGTGTCCAGTTTCCTCCCCGGCTCCTGCCTGTCAGAGACGTCTGTGCCGGCTTTCTTTCTCCTCTAAGGAGGAGGCATGCAGTAGCGCGGCTGGGCTTAGTGGATGGGATGTGACAGGAGCAGCGGCTGAAGCAGGACTTGAATCAGGAGCTCAGCTAACCGCTGGCACTTGTTCCGTAGTCCCCCAGGTCCTGCAGAGCTGCGCTGAGTTCATTGAGCAGCACGGCGTGGTGCAGGGGATCTACCGCCTGTCCGGCGTGGCGTCCAAGATCCAGAAGCTACGGTAAGAGTGCTGCGACTGACACAGCTGTCAGTAGGGGCACGTGCCATGCTGCGGGCGTTCCGAGGCCTGCGCTGTGGGGCAGCTGTGTGCAGGCAGCGTGCGCTCAGCGGTGGTGCGCCAGGCTTGTGTCTGTTTGATAGGAACACGGGGCGTTGAGTAGACTTGCTGGGGCAGGAAGTTCTCCTTCAGTCCTTGAGAGCATTGGAAGGCTGTGGGGGACTGCGGTGTCAGCTCTCATTCCCGTTTCCTCTTGTTGGCAGAGCCCTTTGGAGCAGCCCGCACTCCTCCTTGCTGCTCTGGGCTCCTGGCATGTGATTGTGGAGTAGGCAGCCAGTTGTCAGAGCGTTTCTTTTCTCCTGTGAATCAGGAACCCCTTCCTTTTCTNGACTGTATCGTGTATTGCTTTGGACTTGTCTTCCTCTTTCTCAAAGCCCNNTGTTTTTGTGTCCTTCTCTCCAGCCATGANTTTGAGTCNGAGCAGATTCCGGAGCTNANCGTCCGGGACGTTCACAGCGTGAGCTCCCTGTGCAAGATGTACTTCAGGGAGCTCCCGACCCCTCTGCTGACCGAGCAGCTGCATGGCAAGTTCTCGGTAAGCACAAGGCAATGGCCTTCATGTCCCTCTTCCCTGGGCCTCTTGGCATGGCCTGTCNCATA >5S#rRNA @general @gallus GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGGGTCGGGCCTGGTTAGTACTTGGATGGGAGACCGCCTGGGAATACCGGGTGCTGTAGGCTTT >HY1#scRNA @general @gallus GGCTGGTCCGAAGGTAGTGAGTTATCTCAATTGATTGTTCACAGTCAGTTACAGATCGAACTCCTTGTTCTACTCTTTCCCCCCTTCTCACTACTGCACTTGACTAGTCTTT >HY3#scRNA @general @gallus GGCTGGTCCGAGTGCAGTGGTGTTTACAACTAATTGATCACAACCAGTTACAGATTTCTTTGTTCCTTCTCCACTCCCACTGCTTCACTTGACTAGCCTTT >HY4#scRNA @general @gallus GGCTGGTCCGATGGTAGTGGGTCATCAGAACTTATTAACATTAGTGTCACTAAAGTTGGTATACAACCCCCCATTGCTAAATTTCACTGGATT >HY5#scRNA @general @gallus AGTTGGTCCGAGTGTTGTGGGTTATTGTTAAGTTGATTTAACATTGTCTCCCCCCACAACCGCGCTTGACTAGCTTGCTGTTTT >U1#snRNA @general @gallus ATACTTACCTGGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCATTGCACTCCGGATGTGCTGACCCCTGCGATTTCCCCAAATGTGGGAAACTCGACTGCATAATTTGTGGTAGTGGGGGACTGCGTTCGCGCTTTCCCCTGG >U2#snRNA @general @gallus ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCCGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCCAGGAACGGTGCACCA >U3#snRNA @general @gallus AAGACTATACTTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGGCTTTCTGGCGTTGCTTGGCTGCAACTGCCGTCAGCCATTGATGATCGTTCTTCTCTCCGTATTGGGGAGTGAGAGGGAGAGAACGCGGTCTGAGTGGT >U4#snRNA @general @gallus AGCTTTGCGCAGTGGCAGTATCGTAGCCAATGAGGTTTATCCGAGGCGCGATTATTGCTAATTGAAAACTTTTCCCAATACCCCGCCGTGACGACTTGCAATATAGTCGGCATTGGCAATTTTTGACAGTCTCTACGGAGACTGG >U5#snRNA @general @gallus ATACTCTGGTTTCTCTTCAGATCGCATAAATCTTTCGCCTTTTACTAAAGATTTCCGTGGAGAGGAACAACTCTGAGTCTTAACCCAATTTTTTGAGCCTTGCCTTGGCAAGGCTA >U6#snRNA @general @gallus GTGCTCGCTTCGGCAGCACATATACTAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTGAAGCGTTCCATATTTTT >U7#snRNA @general @gallus AAGTGTTACAGCTCTTTTAGAATTTGTCTAGCAGGCTTTCTGGCTTTTCACCGGAAAGCCCCT >U8#snRNA @general @gallus ATCGTCAGGTGGGATAATCCTTACCTGTTCCTCCTCCGGAGGGCAGATTAGAACATGATGATTGGAGATGCATGAAACGTGATTAACGTCTCTGCGTAATCAGGTCTTGCAACATCCTGATTGCTCCTATCTGATT >U13#snRNA @general @gallus GATCCTTTTGTAGTTCATAAGCGTGATGATTGGGTGTTCACGCGCATGTGTGAGATGTGCCACCCTCAAACCTTGTTACGACGTCGGCACATTACCCGTCTGACGTGA >U13_#snRNA @general @gallus GATCCTTTTGTAGTTCATAAGCGTGATGATTGGGTTTTCACGCTCATGTGTGAGATGTGCCTCCCTCAAACCTTGTTACGACGTCGGCACATTACCCGTCTGACGTGA >U14#snRNA @general @gallus TCGCTGTGATGATGGATTCCAAAACCATTCGTAGTTTCCACCAGAAGTGCTGTGTTGGCTAGTTCCTTCCTTGGATGTCTGAGCGAA >U17#snRNA @general @gallus TCCAACGTGGATACACCCGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGAGCATAGGGCTCTGCCCCATGATGTACAAGTCCCTTTCCACAACGTTGGAAATAAAGCTGGGCCTCGTGTCTGCGCCTGCATATTCCTACAGCTTCCCAGAGTCCTGTCGACAATTACTGGGGAGACAAACCATGCAGGAAACAGCC >tRNA-Ala-GCA#tRNA @general @gallus GGGGGTGTAGCTCAGTGGTAGAGCACATGCTTTGCATGTGTGAGGCCCCGGGTTCGATCCCCGGCACCTCCACCA >tRNA-Ala-GCG#tRNA @general @gallus GGGGATGTAGCTCAGTGGTAGAGCGCGCGCTTCGCATGTGTGAGGCCCCGGGTTCGATCCCCGGCATCTCCACCA >tRNA-Ala-GCY#tRNA @general @gallus GGGGAATTAGCTCAAGCGGTAGAGCGCTCGCTTAGCATGCGAGAGGTAGCGGGATCGACGCCCGCATTCTCCACCA >tRNA-Ala-GCY_#tRNA @general @gallus GGGGGTGTAGCTCAGTGGTAGAGCGCGTGCTTAGCATGCACGAGGCCCCGGGTTCAATCCCCAGCACCTCCACCA >tRNA-Arg-AGA#tRNA @general @gallus GGCTCTGTGGCGCAATGGATAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTCCCGCCAGAGTCGCCA >tRNA-Arg-AGG#tRNA @general @gallus GCCCCAGTGGCCTAATGGATAAGGCACTGGCCTCCTAAGCCAGGGATTGTGGGTTCGAGTCCCACCTGGGGTACCA >tRNA-Arg-CGA#tRNA @general @gallus GACCACGTGGCCTAATGGATAAGGCGTCTGACTTCGGATCAGAAGATTGAGGGTTCGAATCCCTTCGTGGTTACCA >tRNA-Arg-CGA_#tRNA @general @gallus GGCCGCGTGGCCTAATGGATAAGGCGTCTGACTTCGGATCAGAAGATTGCAGGTTCGAGTCCTGCCGCGGTCGCCA >tRNA-Arg-CGG#tRNA @general @gallus GGCCGCGTGGCCTAATGGATAAGGCGTCTGATTCCGGATCAGAAGATTGAGGGTTCGAGTCCCTTCGTGGTCGCCA >tRNA-Arg-CGY#tRNA @general @gallus GCAGAATTAGTTCAAACGGATAGAGCAGCAACCTACGAAGTTGTTTGTTAGGGGTTCGAATCCCTTATTCTGCACCA >tRNA-Arg-CGY_#tRNA @general @gallus GGGCCAGTGGCGCAATGGATAACGCGTCTGACTACGGATCAGAAGATTCTAGGTTCGACTCCTGGCTGGCTCGCCA >tRNA-Asn-AAC#tRNA @general @gallus GTCTCTGTGGCGCAATCGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTGGTTCGAGCCCACCCAGGGACGCCA >tRNA-Asn-AAT#tRNA @general @gallus GTCTCTGTGGCGCAATCGGTCAGAGCGTTCGGCTATTAACCGAACGGTGAGTAGTTCAAGACCACCCAGGGACGCCA >tRNA-Asp-GAY#tRNA @general @gallus TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCCA >tRNA-Cys-TGY#tRNA @general @gallus GGGGGTATAGCTCAGGGGTAGAGCATTTGACTGCAGATCAAGAGGTCCCCGGTTCAAATCCAGGTGCCCCCTCCA >tRNA-Gln-CAA#tRNA @general @gallus GGTCCCATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCAATCCGAGTTCGAATCTCGGTGGGACCTCCA >tRNA-Gln-CAA_#tRNA @general @gallus TAGGACATGGTGTAATAGGTAGCACGGAGAATTTTGAATTCTCAGGGGTAGGTTCAATTCCTATAGTTCTAGCCA >tRNA-Gln-CAG#tRNA @general @gallus GGTTCCATGGTGTAATGGTAAGCACTCTGGACTCTGAATCCAGCGATCCGAGTTCAAGTCTCGGTGGAACCTCCA >tRNA-Glu-GAA#tRNA @general @gallus TCCCTGGTGGTCTAGTGGCTAGGATTCGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAACCA >tRNA-Glu-GAG#tRNA @general @gallus CCCCTGGTGGTCTAGTGGTTAGGATTCGGTGCTCTCACCGCTGCTGCCCGCGTTCGATTCCCGGTCAGGGAACCA >tRNA-Glu-GAG_#tRNA @general @gallus TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAACCA >tRNA-Gly-GGA#tRNA @general @gallus GCGTTGGTGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAACGCACCA >tRNA-Gly-GGG#tRNA @general @gallus GCGTTGGTGGTTCAGTGGTAGAATTCTCGCCTCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCAATGCACCA >tRNA-Gly-GGY#tRNA @general @gallus GCATKGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCAATGCACCA >tRNA-His-CAY#tRNA @general @gallus GCAGTGACTGTATAGTGGTTAGCACTCTGTGTTGTGGCCACAGCAACCATGGTTCAAATCTGAGTCATGACACCA >tRNA-His-CAY_#tRNA @general @gallus GCCATGATCGTATAGTGGTTAGTACTCTGCGCTGTGGCCGCAGCAACCTCGGTTCGAATCCGAGTCACGGCACCA >tRNA-Ile-ATA#tRNA @general @gallus GCTCCAGTGGCGCAATCGGTTAGCGCGCGGTACTTATAATGCCGAGGTTGTGAGTTCGAGCCTCACCTGGAGCACCA >tRNA-Ile-ATC#tRNA @general @gallus GGCCGGTTAGCTCAGTTGGTAAGAGCGTGGTGCTGATAACACCAAGGTCGCGGGCTCGACTCCCGCACCGGCCACCA >tRNA-Ile-ATT#tRNA @general @gallus GGCCGGTTAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGGCCACCA >tRNA-Leu-CTA#tRNA @general @gallus GGTAGCGTGGCCGAGTGGTCTAAGGCGCTGGATTTAGGCTCCAGTCATTTCGATGGCGTGGGTTCGAATCCCACCGCTGCCACCA >tRNA-Leu-CTA_#tRNA @general @gallus GGTAGTGTGGCCGAGCGGTCTAAGGCGCTGGATTTAGGCTCCAGTCTCTTCGGGGGCGTGGGTTCGAATCCCACCACTGCCACCA >tRNA-Leu-CTG#tRNA @general @gallus GTCAGGATGGCCGAGCAGTCTAAGGCGCTGCGTTCAAATCGCACCCTCCGCTGGAGGCGTGGGTTCGAATCCCACTTTTGACACCA >tRNA-Leu-CTY#tRNA @general @gallus GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGGCGTGGGTTCGAATCCCACCGCTGCCACCA >tRNA-Leu-TTA#tRNA @general @gallus ACCGGGATGGCCGAGTGGTTAAGGCGTTGGACTTAAGATCCAATGGACTGGTGTCCGCGTGGGTTCGAACCCCACTCCTGGTACCA >tRNA-Leu-TTA(m)#tRNA (mitochondrial) @general @gallus GTTAAGATGGCAGAGCCTGGTAATCGCATAAAACTTAAAATTTTACAGTCAGAGGTTCAACTCCTCTTCTTAACACCA >tRNA-Leu-TTG#tRNA @general @gallus GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTCCGATGGAGGCGTGGGTTCGAATCCCACTTCTGACACCA >tRNA-Lys-AAA#tRNA @general @gallus GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCCAGGGTTCAAGTCCCTGTTCAGGCGCCA >tRNA-Lys-AAG#tRNA @general @gallus GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCCA >tRNA-Met#tRNA @general @gallus GCCCTCTTAGCGCAGCTGGCAGCGCGTCAGTCTCATAATCTGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCACCA >tRNA-Met-i#tRNA @general @gallus AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTACCA >tRNA-Met_#tRNA @general @gallus GCCTCGTTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACACGGGGCACCA >tRNA-Phe-TTY#tRNA @general @gallus GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGGGTTTCGGCACCA >tRNA-Pro-CCA#tRNA @general @gallus GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCCA >tRNA-Pro-CCG#tRNA @general @gallus GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCCA >tRNA-Pro-CCY#tRNA @general @gallus GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCCA >tRNA-SeC(e)-TGA#tRNA @general @gallus GCCCGGATGATCCTCAGTGGTCTGGGGTGCAGGCTTCAAACCTGTAGCTGTCTAGCGACAGAGTGGTTCAATTCCACCTTTCGGGCCCA >tRNA-Ser-AGY#tRNA @general @gallus GACGAGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACACGTGGGTTCGAATCCCATCCTCGTCGCCA >tRNA-Ser-TCA#tRNA @general @gallus GCAGCGATGGCCGAGTGGTTAAGGCGTTGGACTTGAAATCCAATGGGGTCTCCCCGCGCAGGTTCGAACCCTGCTCGCTGCGCCA >tRNA-Ser-TCA(m)#tRNA (mitochondrial) @general @gallus GAGAAGGTCACAGAGGTTATGGGATTGGCTTGAAACCAGTCTGTGGGGGGTTCGATTCCCTCCTTTTTCACCA >tRNA-Ser-TCA_#tRNA @general @gallus GTAGTCGTGGCCGAGTGGTTAAGGCGATGGACTTGAAATCCATTGGGGTTTCCCCGCGCAGGTTCGAATCCTGCCGACTACGCCA >tRNA-Ser-TCG#tRNA @general @gallus GCTGTGATGGCCGAGTGGTTAAGGCGTTGGACTCGAAATCCAATGGGGTCTCCCCGCGCAGGTTCGAATCCTGCTCACAGCGCCA >tRNA-Ser-TCY#tRNA @general @gallus GTAGTCGTGGCCGAGTGGTTAAGGCGATGGACTAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACGCCA >tRNA-Thr-ACA#tRNA @general @gallus GGCTCCATAGCTCAGGGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGCGAGTTCAAATCTCGCTGGGGCCTCCA >tRNA-Thr-ACG#tRNA @general @gallus GGCGCGGTGGCCAAGTGGTAAGGCGTCGGTCTCGTAAACCGAAGATCGCGGGTTCGAACCCCGTCCGTGCCTCCA >tRNA-Thr-ACG_#tRNA @general @gallus GGCTCTGTGGCTTAGTTGGTTAAAGCGCCTGTCTCGTAAAC AGGAGATCCTGGGTTCGAATCCCAGCGGGGCCTCCA >tRNA-Thr-ACY#tRNA @general @gallus GGCGCCGTGGCTTAGCTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCCTGGGTTCGAATCCCAGCGGTGCCTCCA >tRNA-Thr-ACY_#tRNA @general @gallus GGCTCCGTGGCTTAGCTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCCTGGGTTCGAATCCCAGCGGGGCCTCCA >tRNA-Trp-TGG#tRNA @general @gallus GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCGGGGTCACCA >tRNA-Tyr-TAC#tRNA @general @gallus CCTTCGATAGCTCAGCTGGTAGAGCGGAGGACTGTAGATCCTTAGGTCGCTGGTTCGATTCCGGCTCGAAGGACCA >tRNA-Tyr-TAT#tRNA @general @gallus CCTTCAATAGTTCAGCTGGTAGAGCAGAGGACTATAGCTCCTTAGGTTGCTGGTTCGATTCCAGCTTGAAGGACCA >tRNA-Val-GTA#tRNA @general @gallus GGTTCCATAGTGTAGTGGTTATCACGTCTGCTTTACACGCAGAAGGTCCTGGGTTCGAGCCCCAGTGGAACCACCA >tRNA-Val-GTG#tRNA @general @gallus GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAACACCA >tRNA-Val-GTY#tRNA @general @gallus GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAACACCA